Blastococcus jejuensis (DSM 19597, JCM 15614, KCCM 42251)

Name: Blastococcus jejuensis (DSM 19597, JCM 15614, KCCM 42251)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5814

Type strain

Strain Designation KST3-10

Culture col. no. DSM 19597 JCM 15614 KCCM 42251 NRRL B-24440 CCUG 61910 1 more

NCBI tax ID(s) 351224

Special Collections DSMZ CCUG JCM Literature strains

History DSMZ <- NRRL (ARS) <- Soon Dong Lee <- S.H. Seo, KST3-10 JCM <-- KCCM 42251 <-- S. D. Lee KST3-10.

Links

Blastococcus jejuensis KST3-10 is an aerobe bacterium that was isolated from sand sediment.

aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 396601

JCM 15614,DSM 19597

@ref 20215

Last LPSN update 2026-05-29 08:26:15

Domain Bacteria

Phylum Actinomycetota

Class Actinomycetes

Order Geodermatophilales

Family Geodermatophilaceae

Genus Blastococcus

Species Blastococcus jejuensis

Full scientific name Blastococcus jejuensis Lee 2006

Morphology

Colony morphology

24981

Colony colorapricot

Pigmentation

@ref	Production	Color
24981		apricot

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
8201	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
8201	positive	growth	30
67770	positive	growth	28

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
62731	aerobe
125439	obligate aerobe	99.83

Spore formation

@ref	Spore formation	Confidence
125439		92.168

Observation

67770

Observationquinones: MK-9(H₄)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
24981	16763 ChEBI	2-oxobutanoate	+	oxidation
24981	37054 ChEBI	3-hydroxybutyrate	+	oxidation
24981	17968 ChEBI	butyrate	+	oxidation
24981	29990 ChEBI	D-aspartate	+/-	oxidation
24981	18024 ChEBI	D-galacturonic acid	+	oxidation
24981	30612 ChEBI	D-glucarate	+/-	oxidation
24981	8391 ChEBI	D-gluconate	+/-	oxidation
24981	16899 ChEBI	D-mannitol	+	oxidation
24981	17924 ChEBI	D-sorbitol	+	oxidation
24981	23652 ChEBI	dextrin	-	oxidation
24981	16537 ChEBI	galactarate	+	oxidation
24981	5291 ChEBI	gelatin	+	oxidation
24981	28066 ChEBI	gentiobiose	+	oxidation
24981	16977 ChEBI	L-alanine	+	oxidation
24981	16467 ChEBI	L-arginine	-	oxidation
24981	29991 ChEBI	L-aspartate	+/-	oxidation
24981	37657 ChEBI	methyl D-glucoside	-	oxidation
24981	506227 ChEBI	N-acetylglucosamine	-	oxidation
24981	35418 ChEBI	n-acetylneuraminate	-	oxidation
24981	17309 ChEBI	pectin	-	oxidation
24981	17814 ChEBI	salicin	-	oxidation
24981	75229 ChEBI	sodium bromate	-	oxidation

Enzymes

@ref	Value	Activity	Ec
24981	catalase	+	1.11.1.6
24981	cytochrome oxidase	-	1.9.3.1

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Terrestrial	#Sandy
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
8201	sand sediment	Gwakji beach, Jeju Island	Republic of Korea	KOR	Asia
62731	Sand sediment	Jeju Island,Gwakji Beach	Republic of Korea	KOR	Asia
67770	Sand sediment from Gwakji beach	Jeju Island	Republic of Korea	KOR	Asia

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
8201	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	NCBI tax ID	Score
124043	ASM3953470v1 assembly for Blastococcus jejuensis JCM 15614	scaffold	GCA_039534705	351224	51.34

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
8201	Blastococcus jejuensis strain KST3-10 16S ribosomal RNA gene, partial sequence	DQ200983	1404		351224

GC content

8201

GC-content (mol%)72.3

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM3953470v1 assembly for Blastococcus jejuensis JCM 15614
NCBI: GCA_039534705

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	99.83	no
125439	gram_stain	BacteriaNetⓘ	positive	75.67	no
125439	motility	BacteriaNetⓘ	no	61.14	no
125439	spore_formation	BacteriaNetⓘ	no	92.17	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Blastococcus deserti sp. nov., isolated from a desert sample.	Yang ZW, Asem MD, Li X, Li LY, Salam N, Alkhalifah DHM, Hozzein WN, Nie GX, Li WJ	Arch Microbiol	10.1007/s00203-018-1604-1	2018
Phylogeny	Blastococcus endophyticus sp. nov., an actinobacterium isolated from Camptotheca acuminata.	Zhu WY, Zhang JL, Qin YL, Xiong ZJ, Zhang DF, Klenk HP, Zhao LX, Xu LH, Li WJ	Int J Syst Evol Microbiol	10.1099/ijs.0.049239-0	2013
Phylogeny	Blastococcus jejuensis sp. nov., an actinomycete from beach sediment, and emended description of the genus Blastococcus Ahrens and Moll 1970.	Lee SD	Int J Syst Evol Microbiol	10.1099/ijs.0.64268-0	2006

References

#8201	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19597
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#24981	K. L. Hezbri, Moussa,Nouioui, Imen,Gtari, Maher,Rohde, Manfred,Spröer, Cathrin,Schumann, Peter,Klenk, Hans-Peter,Ghodhbane-Gtari, Faten,Montero-Calasanz, Maria del Carmen: Blastococcus capsensis sp. nov., isolated from an archaeological Roman pool and emended description of the genus Blastococcus, B. aggregatus, B. saxobsidens, B. jejuensis and B. endophyticus. IJSEM 66: 4864 - 4872 2016 ( DOI 10.1099/ijsem.0.001443 , PubMed 27553620 )
#62731	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 61910
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Blastococcus jejuensis (DSM 19597, JCM 15614, KCCM 42251)

Name and taxonomic classification

Morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_039534705

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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