Strain identifier

BacDive ID: 5814

Type strain: Yes

Species: Blastococcus jejuensis

Strain Designation: KST3-10

Strain history: KCCM 42251 <-- S. D. Lee KST3-10.

NCBI tax ID(s): 351224 (species)

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General

@ref: 8201

BacDive-ID: 5814

DSM-Number: 19597

keywords: 16S sequence, Bacteria, aerobe, mesophilic

description: Blastococcus jejuensis KST3-10 is an aerobe, mesophilic bacterium that was isolated from sand sediment.

NCBI tax id

  • NCBI tax id: 351224
  • Matching level: species

strain history

@refhistory
8201<- NRRL (ARS) <- Soon Dong Lee <- S.H. Seo, KST3-10
67770KCCM 42251 <-- S. D. Lee KST3-10.

doi: 10.13145/bacdive5814.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/actinomycetota
  • domain: Bacteria
  • phylum: Actinomycetota
  • class: Actinomycetes
  • order: Geodermatophilales
  • family: Geodermatophilaceae
  • genus: Blastococcus
  • species: Blastococcus jejuensis
  • full scientific name: Blastococcus jejuensis Lee 2006

@ref: 8201

domain: Bacteria

phylum: Actinobacteria

class: Actinobacteria

order: Actinomycetales

family: Geodermatophilaceae

genus: Blastococcus

species: Blastococcus jejuensis

full scientific name: Blastococcus jejuensis Lee 2006 emend. Hezbri et al. 2016

strain designation: KST3-10

type strain: yes

Morphology

colony morphology

  • @ref: 24981
  • colony color: apricot

pigmentation

  • @ref: 24981
  • production: yes
  • color: apricot

Culture and growth conditions

culture medium

  • @ref: 8201
  • name: R2A MEDIUM (DSMZ Medium 830)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/830
  • composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
8201positivegrowth30mesophilic
67770positivegrowth28mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 62731
  • oxygen tolerance: aerobe

observation

  • @ref: 67770
  • observation: quinones: MK-9(H4)

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
2498123652dextrin-oxidation
2498116467L-arginine-oxidation
2498137657methyl D-glucoside-oxidation
24981506227N-acetylglucosamine-oxidation
2498135418n-acetylneuraminate-oxidation
2498117309pectin-oxidation
2498117814salicin-oxidation
2498175229sodium bromate-oxidation
24981167632-oxobutanoate+oxidation
24981370543-hydroxybutyrate+oxidation
2498117968butyrate+oxidation
2498118024D-galacturonic acid+oxidation
2498116899D-mannitol+oxidation
2498117924D-sorbitol+oxidation
2498116537galactarate+oxidation
249815291gelatin+oxidation
2498128066gentiobiose+oxidation
2498116977L-alanine+oxidation
2498129990D-aspartate+/-oxidation
2498130612D-glucarate+/-oxidation
249818391D-gluconate+/-oxidation
2498129991L-aspartate+/-oxidation

enzymes

@refvalueactivityec
24981catalase+1.11.1.6
24981cytochrome oxidase-1.9.3.1

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
8201sand sedimentGwakji beach, Jeju IslandRepublic of KoreaKORAsia
62731Sand sedimentJeju Island,Gwakji BeachRepublic of KoreaKORAsia
67770Sand sediment from Gwakji beachJeju IslandRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Terrestrial#Sandy
#Environmental#Terrestrial#Sediment

Safety information

risk assessment

  • @ref: 8201
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 8201
  • description: Blastococcus jejuensis strain KST3-10 16S ribosomal RNA gene, partial sequence
  • accession: DQ200983
  • length: 1404
  • database: ena
  • NCBI tax ID: 351224

GC content

  • @ref: 8201
  • GC-content: 72.3

External links

@ref: 8201

culture collection no.: DSM 19597, JCM 15614, KCCM 42251, NRRL B-24440, CCUG 61910

straininfo link

@refstraininfo
75295396601
75296409165

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny17012568Blastococcus jejuensis sp. nov., an actinomycete from beach sediment, and emended description of the genus Blastococcus Ahrens and Moll 1970.Lee SDInt J Syst Evol Microbiol10.1099/ijs.0.64268-02006Actinomycetales/*classification/genetics/isolation & purification/physiology, Bacterial Typing Techniques, DNA, Bacterial/analysis, Genotype, Geologic Sediments/*microbiology, Korea, Molecular Sequence Data, Phenotype, Phylogeny, RNA, Ribosomal, 16S/genetics, *Silicon DioxideGenetics
Phylogeny23475341Blastococcus endophyticus sp. nov., an actinobacterium isolated from Camptotheca acuminata.Zhu WY, Zhang JL, Qin YL, Xiong ZJ, Zhang DF, Klenk HP, Zhao LX, Xu LH, Li WJInt J Syst Evol Microbiol10.1099/ijs.0.049239-02013Actinomycetales/*classification/genetics/isolation & purification, Base Composition, Camptotheca/*microbiology, DNA, Bacterial/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, Plant Leaves/microbiology, Plants, Medicinal/microbiology, RNA, Ribosomal, 16S/geneticsGenetics
Phylogeny30523376Blastococcus deserti sp. nov., isolated from a desert sample.Yang ZW, Asem MD, Li X, Li LY, Salam N, Alkhalifah DHM, Hozzein WN, Nie GX, Li WJArch Microbiol10.1007/s00203-018-1604-12018Actinomycetales/*classification/genetics/growth & development/isolation & purification, Desert Climate, Fatty Acids/analysis, Phenotype, Phylogeny, Sugars/analysisPhenotype

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
8201Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 19597)https://www.dsmz.de/collection/catalogue/details/culture/DSM-19597
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
24981K. L. Hezbri, Moussa,Nouioui, Imen,Gtari, Maher,Rohde, Manfred,Spröer, Cathrin,Schumann, Peter,Klenk, Hans-Peter,Ghodhbane-Gtari, Faten,Montero-Calasanz, Maria del Carmen10.1099/ijsem.0.001443Blastococcus capsensis sp. nov., isolated from an archaeological Roman pool and emended description of the genus Blastococcus, B. aggregatus, B. saxobsidens, B. jejuensis and B. endophyticusIJSEM 66: 4864-4872 201627553620
62731Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 61910)https://www.ccug.se/strain?id=61910
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
75295Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID396601.1StrainInfo: A central database for resolving microbial strain identifiers
75296Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID409165.1StrainInfo: A central database for resolving microbial strain identifiers