Name: Chryseobacterium chaponense Sa 1147-06
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5711

Type strain:

Species: Chryseobacterium chaponense

Strain Designation: Sa 1147-06

Culture col. no.: DSM 23145, CCM 7737, CIP 110405, CCUG 58959

Strain history: CIP <- 2012, DSMZ <- P. Kämpfer, Univ. Giessen, Giessen, Germany: strain Sa 1147-06

NCBI tax ID(s): 713588 (species)

SI-ID 376080

CCM 7737, DSM 23145, CCUG 58959, CIP 110405

Other strains from Chryseobacterium chaponense

C. chaponense Sa 1143-06, DSM 23144
C. chaponense CCUG 58958

Section

Chryseobacterium chaponense Sa 1147-06 is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from salmon Salmo salar.

Gram-negative
rod-shaped
aerobe
animal pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium chaponense**
	Full Scientific Name (LPSN)	Chryseobacterium chaponense Kämpfer et al. 2011

Synonym

Kaistella chaponensis

Information on morphological and physiological properties Morphology

[Ref.: #29830]	Gram stain	negative
[Ref.: #118225]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.978

[Ref.: #29830]	Cell length	2 µm

[Ref.: #29830]	Cell width	1 µm

[Ref.: #29830]	Cell shape	rod-shaped
[Ref.: #118225]	Cell shape	rod-shaped

[Ref.: #29830]	Motility	no
[Ref.: #118225]	Motility	no
[Ref.: #69480]	Motility	no Confidence in %95.108

[Ref.: #29830]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16730]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #16730]

Culture medium growth

[Ref.: #16730]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16730]

Culture medium composition

expand / minimize

[Ref.: #37302]

Culture medium

MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati

[Ref.: #37302]

Culture medium growth

[Ref.: #37302]

Culture medium composition

expand / minimize

[Ref.: #118225]

Culture medium

CIP Medium 566

[Ref.: #118225]

Culture medium growth

[Ref.: #118225]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16730]	growth	28 °C
[Ref.: #29830]	growth	04-37 °C
[Ref.: #37302]	growth	25 °C

[Ref.: #16730]	Temperature range	mesophilic
[Ref.: #37302]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29830]

Oxygen tolerance

aerobe

[Ref.: #29830]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29830]		NaCl		growth	0-1	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29830]	acetate ChEBI	+	carbon source
[Ref.: #29830]	glucose ChEBI	+	carbon source
[Ref.: #29830]	maltose ChEBI	+	carbon source
[Ref.: #29830]	proline ChEBI	+	carbon source
[Ref.: #29830]	propionate ChEBI	+	carbon source

	Enzyme	Enzyme activity	EC number
[Ref.: #29830]	catalase	+	1.11.1.6
[Ref.: #29830]	cytochrome oxidase	+	1.9.3.1
[Ref.: #29830]	urease	+	3.5.1.5

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16730]	Sample type/isolated from	salmon Salmo salar
[Ref.: #16730]	Host species	Salmo salar
[Ref.: #16730]	Geographic location (country and/or sea, region)	Lake Chapo, 43 km north-west of Puerto Montt
[Ref.: #16730]	Country	Chile
[Ref.: #16730]	Country ISO 3 Code	CHL
[Ref.: #16730]	Continent	Middle and South America

[Ref.: #61787]	Sample type/isolated from	Salmon
[Ref.: #61787]	Sampling date	2009
[Ref.: #61787]	Geographic location (country and/or sea, region)	Santiago
[Ref.: #61787]	Country	Chile
[Ref.: #61787]	Country ISO 3 Code	CHL
[Ref.: #61787]	Continent	Middle and South America

[Ref.: #118225]	Sample type/isolated from	Animal, Salmon, Salmo salar
[Ref.: #118225]	Geographic location (country and/or sea, region)	Chapo lake
[Ref.: #118225]	Country	Chile
[Ref.: #118225]	Country ISO 3 Code	CHL
[Ref.: #118225]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Host

#Fishes

#Salmonidae

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16730]	Pathogenicity (animal)	yes, in single cases
[Ref.: #16730]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #118225]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16730]	Chryseobacterium chaponense strain Sa 1147-06 16S ribosomal RNA gene, partial sequence	GU345045	1398	ENA	713588 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Kaistella chaponensis DSM 23145	GCA_900156725	contig	GenBank	713588 tax ID	*
[Ref.: #66792]	Chryseobacterium chaponense strain DSM 23145	713588.4	wgs	PATRIC	713588 tax ID	*
[Ref.: #66792]	Kaistella chaponensis DSM 23145	2681813521	draft	JGI IMG/M	713588 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chryseobacterium chaponense strain DSM 23145 PATRIC: 713588.4
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium chaponense strain DSM 23145 PATRIC: 713588.4
[Ref.: #69480]	gram-positive	no	97.794	yes
[Ref.: #69480]	anaerobic	no	99.142	yes
[Ref.: #69480]	halophile	no	92.114	no
[Ref.: #69480]	spore-forming	no	95.155	no
[Ref.: #69480]	glucose-util	yes	82.69	yes
[Ref.: #69480]	thermophile	no	99.59	no
[Ref.: #69480]	flagellated	no	96.922	yes
[Ref.: #69480]	aerobic	yes	92.084	no
[Ref.: #69480]	motile	no	92.867	no
[Ref.: #69480]	glucose-ferment	no	92.364	no

Availability in culture collections External links

[Ref.: #16730]

Culture collection no.

DSM 23145, CCM 7737, CIP 110405, CCUG 58959

[Ref.: #75193]

SI-ID 376080

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Frigoriflavimonas asaccharolytica gen. nov., sp. nov., a novel psychrophilic esterase and protease producing bacterium isolated from Antarctica.	Menes RJ, Machin EV, Roldan DM, Kyrpides N, Woyke T, Whitman WB, Busse HJ	Antonie Van Leeuwenhoek	10.1007/s10482-021-01656-x	2021	*
Phylogeny	Kaistella flava sp. nov., isolated from Antarctic tundra soil, and emended descriptions of Kaistella yonginensis, Kaistella jeonii, Kaistella antarctica and Kaistella chaponensis.	Peng X, Zhang Y, Lu Y, Zhou X, Wei Z, Sun Y, Kuang C, Lu L, Geng Y, Qin K, Liu J, Peng F	Int J Syst Evol Microbiol	10.1099/ijsem.0.004740	2021	*
Phylogeny	Kaistella gelatinilytica sp. nov., a flavobacterium isolated from Antarctic soil.	Ren X, Jiang P, Liu Z, Liang Y, Li J	Int J Syst Evol Microbiol	10.1099/ijsem.0.004753	2021	*
Phylogeny	Chryseobacterium chaponense sp. nov., isolated from farmed Atlantic salmon (Salmo salar).	Kampfer P, Fallschissel K, Avendano-Herrera R	Int J Syst Evol Microbiol	10.1099/ijs.0.022004-0	2010	*

References

#16730

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23145

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29830

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26206 (see below)

#37302 ; Curators of the CIP;
#61787 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58959

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75193

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID376080.1 )

#118225 Collection of Institut Pasteur ; Curators of the CIP; CIP 110405

#26206

IJSEM 497 2011 ( DOI 10.1099/ijs.0.022004-0 , PubMed 20363929 )

* These data were automatically processed and therefore are not curated

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Chryseobacterium chaponense strain DSM 23145

Chryseobacterium chaponense strain DSM 23145

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