Chryseobacterium piperi (DSM 22249, ATCC BAA-1782, CCUG 57707)

Name: Chryseobacterium piperi (DSM 22249, ATCC BAA-1782, CCUG 57707)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5712

Type strain

Strain Designation CTM

Culture col. no. DSM 22249 ATCC BAA-1782 CCUG 57707 JCM 15960 KCTC 23267 1 more

NCBI tax ID(s) 558152

Special Collections DSMZ CCUG JCM KCTC

History DSMZ <- J. D. Newman, Lycoming College, Williamsport, USA; CTM JCM <-- J. D. Newman strain CTM. KCTC <- Jeffrey D Newman, ycoming College, USA

Links

Chryseobacterium piperi CTM is an aerobe, Gram-negative bacterium that was isolated from sediment and water from a freshwater creek.

Gram-negative aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 397194

LMG 27881,KCTC 23267,ATCC BAA-1782,JCM 15960,DSM 22249,CCUG 57707

@ref 20215

Last LPSN update 2026-05-29 08:26:14

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Chryseobacterium

Species Chryseobacterium piperi

Full scientific name Chryseobacterium piperi Strahan et al. 2011

Morphology

Cell morphology

@ref	Gram stain	Confidence
67771	negative
125439	negative	97.941

Colony morphology

61426

Incubation period1 day

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16231	TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545)		Medium recipe at MediaDive	Name: TRYPTONE SOYA BROTH (TSB) (DSMZ Medium 545) Composition: Casein peptone 17.0 g/l NaCl 5.0 g/l Soy peptone 3.0 g/l D(+)-Glucose 2.5 g/l K2HPO4 2.5 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
16231	positive	growth	28
61426	positive	growth	30
67770	positive	growth	30
67771	positive	growth	30

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
61426	aerobe
67771	aerobe
125439	obligate aerobe	92.4

Spore formation

@ref	Spore formation	Confidence
125439		97.851

Observation

67770

Observationquinones: MK-6

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	suberin monomers biosynthesis	100	2 of 2
66794	palmitate biosynthesis	100	22 of 22
66794	gluconeogenesis	100	8 of 8
66794	acetate fermentation	100	4 of 4
66794	vitamin B1 metabolism	100	13 of 13
66794	coenzyme A metabolism	100	4 of 4
66794	vitamin K metabolism	100	5 of 5
66794	glycogen metabolism	100	5 of 5
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	adipate degradation	100	2 of 2
66794	teichoic acid biosynthesis	100	1 of 1
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	biotin biosynthesis	100	4 of 4
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	starch degradation	100	10 of 10
66794	aerobactin biosynthesis	100	1 of 1
66794	folate polyglutamylation	100	1 of 1
66794	Entner Doudoroff pathway	90	9 of 10
66794	propionate fermentation	90	9 of 10
66794	lipid A biosynthesis	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	heme metabolism	85.71	12 of 14
66794	pentose phosphate pathway	81.82	9 of 11
66794	cellulose degradation	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	photosynthesis	78.57	11 of 14
66794	NAD metabolism	77.78	14 of 18
66794	molybdenum cofactor biosynthesis	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	leucine metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	CMP-KDO biosynthesis	75	3 of 4
66794	ppGpp biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	isoleucine metabolism	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	flavin biosynthesis	73.33	11 of 15
66794	vitamin B6 metabolism	72.73	8 of 11
66794	tyrosine metabolism	71.43	10 of 14
66794	tetrahydrofolate metabolism	71.43	10 of 14
66794	glutamate and glutamine metabolism	71.43	20 of 28
66794	citric acid cycle	71.43	10 of 14
66794	purine metabolism	70.21	66 of 94
66794	pyrimidine metabolism	68.89	31 of 45
66794	tryptophan metabolism	68.42	26 of 38
66794	acetoin degradation	66.67	2 of 3
66794	enterobactin biosynthesis	66.67	2 of 3
66794	d-mannose degradation	66.67	6 of 9
66794	cysteine metabolism	66.67	12 of 18
66794	cyanate degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	glutathione metabolism	64.29	9 of 14
66794	dTDPLrhamnose biosynthesis	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	histidine metabolism	62.07	18 of 29
66794	alanine metabolism	62.07	18 of 29
66794	urea cycle	61.54	8 of 13
66794	non-pathway related	60.53	23 of 38
66794	glycine betaine biosynthesis	60	3 of 5
66794	arachidonate biosynthesis	60	3 of 5
66794	methylglyoxal degradation	60	3 of 5
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	lipid metabolism	58.06	18 of 31
66794	methionine metabolism	57.69	15 of 26
66794	lysine metabolism	57.14	24 of 42
66794	propanol degradation	57.14	4 of 7
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	d-xylose degradation	54.55	6 of 11
66794	proline metabolism	54.55	6 of 11
66794	arginine metabolism	54.17	13 of 24
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	pantothenate biosynthesis	50	3 of 6
66794	kanosamine biosynthesis II	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	ascorbate metabolism	50	11 of 22
66794	cyclohexanol degradation	50	2 of 4
66794	degradation of sugar acids	48	12 of 25
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	coenzyme M biosynthesis	40	4 of 10
66794	lipoate biosynthesis	40	2 of 5
66794	D-cycloserine biosynthesis	40	2 of 5
66794	metabolism of amino sugars and derivatives	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	degradation of hexoses	38.89	7 of 18
66794	isoprenoid biosynthesis	38.46	10 of 26
66794	sulfate reduction	38.46	5 of 13
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	ketogluconate metabolism	37.5	3 of 8
66794	metabolism of disaccharids	36.36	4 of 11
66794	oxidative phosphorylation	36.26	33 of 91
66794	degradation of pentoses	35.71	10 of 28
66794	phenol degradation	35	7 of 20
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	selenocysteine biosynthesis	33.33	2 of 6
66794	IAA biosynthesis	33.33	1 of 3
66794	3-phenylpropionate degradation	33.33	5 of 15
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	octane oxidation	33.33	1 of 3
66794	degradation of sugar alcohols	31.25	5 of 16
66794	polyamine pathway	30.43	7 of 23
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	myo-inositol biosynthesis	30	3 of 10
66794	mevalonate metabolism	28.57	2 of 7
66794	arachidonic acid metabolism	27.78	5 of 18
66794	carotenoid biosynthesis	27.27	6 of 22
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	lactate fermentation	25	1 of 4
66794	butanoate fermentation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Freshwater
#Environmental	#Aquatic	#River (Creek)
#Environmental	#Terrestrial	#Sediment

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Latitude	Longitude	Sampling date
16231	sediment and water from a freshwater creek	Pennsylvania, Forksville, Loyalsock Creek (41.488° N 76.600°W)	USA	USA	North America	41.488	-76.6 41.488/-76.6
61426	Freshwater creek	Pennsylania,Loyalsock Creek	USA	USA	North America			2006-01-01
67770	Freshwater creek in North-central Pennsylvania		USA	USA	North America
67771	From sediment and water from a freshwater creek	Loyalsock Creek (41.488Â° N 76.600Â°W), Montoursville, Pennsylvania	USA	USA	North America	41.488	-76.6 41.488/-76.6

Taxonmaps

69479

Global distribution of 16S sequence EU999735 (>99% sequence identity) for Chryseobacterium piperi from Microbeatlas

Aquatic Samples	33
Soil Samples	7
Animal Samples	27
Plant Samples	4
Total Samples	71

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16231	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM228563v2 assembly for Chryseobacterium piperi ATCC BAA-1782	complete	GCA_002285635	558152.14	2802429322	558152	99.1
67771	ASM73777v1 assembly for Chryseobacterium piperi CTM	contig	GCA_000737775	558152.5	2619619246	558152	61.64

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16231	Chryseobacterium piperi strain CTM 16S ribosomal RNA gene, partial sequence	EU999735	1444		558152

GC content

@ref	GC-content (mol%)	Method
16231	38.6	high performance liquid chromatography (HPLC)
16231	35.2	sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM228563v2 assembly for Chryseobacterium piperi ATCC BAA-1782
NCBI: GCA_002285635

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	92.40	no
125439	gram_stain	BacteriaNetⓘ	negative	97.94	no
125439	motility	BacteriaNetⓘ	no	81.07	no
125439	spore_formation	BacteriaNetⓘ	no	97.85	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Closed Genome Sequence of Chryseobacterium piperi Strain CTM^T/ATCC BAA-1782, a Gram-Negative Bacterium with Clostridial Neurotoxin-Like Coding Sequences.	Wentz TG, Muruvanda T, Lomonaco S, Thirunavukkarasu N, Hoffmann M, Allard MW, Hodge DR, Pillai SP, Hammack TS, Brown EW, Sharma SK.	Genome Announc	10.1128/genomea.01296-17	2017
Phylogeny	Chryseobacterium piperi sp. nov., isolated from a freshwater creek.	Strahan BL, Failor KC, Batties AM, Hayes PS, Cicconi KM, Mason CT, Newman JD	Int J Syst Evol Microbiol	10.1099/ijs.0.027805-0	2010

References

#16231	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22249
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#61426	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 57707
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Chryseobacterium piperi (DSM 22249, ATCC BAA-1782, CCUG 57707)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Observation

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_002285635

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media