Strain identifier
BacDive ID: 5711
Type strain: 
Species: Chryseobacterium chaponense
Strain Designation: Sa 1147-06
Strain history: CIP <- 2012, DSMZ <- P. Kämpfer, Univ. Giessen, Giessen, Germany: strain Sa 1147-06
NCBI tax ID(s): 713588 (species)
version 8.1 (current version)
General
@ref: 16730
BacDive-ID: 5711
DSM-Number: 23145
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, rod-shaped, animal pathogen
description: Chryseobacterium chaponense Sa 1147-06 is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from salmon Salmo salar.
NCBI tax id
- NCBI tax id: 713588
- Matching level: species
strain history
| @ref | history |
|---|---|
| 16730 | <- P. Kämpfer, Univ. Giessen, Germany; Sa 1147-06 |
| 118225 | CIP <- 2012, DSMZ <- P. Kämpfer, Univ. Giessen, Giessen, Germany: strain Sa 1147-06 |
doi: 10.13145/bacdive5711.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Weeksellaceae
- genus: Chryseobacterium
- species: Chryseobacterium chaponense
- full scientific name: Chryseobacterium chaponense Kämpfer et al. 2011
synonyms
- @ref: 20215
- synonym: Kaistella chaponensis
@ref: 16730
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Weeksellaceae
genus: Chryseobacterium
species: Chryseobacterium chaponense
full scientific name: Chryseobacterium chaponense Kämpfer et al. 2011
strain designation: Sa 1147-06
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | confidence |
|---|---|---|---|---|---|---|
| 29830 | negative | 2 µm | 1 µm | rod-shaped | no | |
| 69480 | no | 95.108 | ||||
| 69480 | negative | 99.978 | ||||
| 118225 | negative | rod-shaped | no |
pigmentation
- @ref: 29830
- production: yes
Culture and growth conditions
culture medium
| @ref | name | growth | link | composition |
|---|---|---|---|---|
| 16730 | R2A MEDIUM (DSMZ Medium 830) | yes | https://mediadive.dsmz.de/medium/830 | Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water |
| 37302 | MEDIUM 566- Reasoner's 2A agar for Flavobacterium micromati | yes | Distilled water make up to (1000.000 ml);R2A agar (18.200 g) | |
| 118225 | CIP Medium 566 | yes | https://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=566 |
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 16730 | positive | growth | 28 | mesophilic |
| 29830 | positive | growth | 04-37 | |
| 37302 | positive | growth | 25 | mesophilic |
Physiology and metabolism
oxygen tolerance
- @ref: 29830
- oxygen tolerance: aerobe
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 29830 | no | |
| 69481 | no | 100 |
| 69480 | no | 99.995 |
halophily
- @ref: 29830
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-1 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 29830 | 30089 | acetate | + | carbon source |
| 29830 | 17234 | glucose | + | carbon source |
| 29830 | 17306 | maltose | + | carbon source |
| 29830 | 26271 | proline | + | carbon source |
| 29830 | 17272 | propionate | + | carbon source |
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 29830 | catalase | + | 1.11.1.6 |
| 29830 | cytochrome oxidase | + | 1.9.3.1 |
| 29830 | urease | + | 3.5.1.5 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|---|---|
| 16730 | salmon Salmo salar | Salmo salar | Lake Chapo, 43 km north-west of Puerto Montt | Chile | CHL | Middle and South America | |
| 61787 | Salmon | Santiago | Chile | CHL | Middle and South America | 2009 | |
| 118225 | Animal, Salmon, Salmo salar | Chapo lake | Chile | CHL | Middle and South America |
isolation source categories
- Cat1: #Host
- Cat2: #Fishes
- Cat3: #Salmonidae
Safety information
risk assessment
| @ref | pathogenicity animal | biosafety level | biosafety level comment |
|---|---|---|---|
| 16730 | yes, in single cases | 1 | Risk group (German classification) |
| 118225 | 1 | Risk group (French classification) |
Sequence information
16S sequences
- @ref: 16730
- description: Chryseobacterium chaponense strain Sa 1147-06 16S ribosomal RNA gene, partial sequence
- accession: GU345045
- length: 1398
- database: ena
- NCBI tax ID: 713588
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Kaistella chaponensis DSM 23145 | GCA_900156725 | contig | ncbi | 713588 |
| 66792 | Chryseobacterium chaponense strain DSM 23145 | 713588.4 | wgs | patric | 713588 |
| 66792 | Kaistella chaponensis DSM 23145 | 2681813521 | draft | img | 713588 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| gram-positive | no | 97.794 | yes |
| anaerobic | no | 99.142 | yes |
| halophile | no | 92.114 | no |
| spore-forming | no | 95.155 | no |
| glucose-util | yes | 82.69 | yes |
| thermophile | no | 99.59 | no |
| flagellated | no | 96.922 | yes |
| aerobic | yes | 92.084 | no |
| motile | no | 92.867 | no |
| glucose-ferment | no | 92.364 | no |
External links
@ref: 16730
culture collection no.: DSM 23145, CCM 7737, CIP 110405, CCUG 58959
straininfo link
- @ref: 75193
- straininfo: 376080
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 20363929 | Chryseobacterium chaponense sp. nov., isolated from farmed Atlantic salmon (Salmo salar). | Kampfer P, Fallschissel K, Avendano-Herrera R | Int J Syst Evol Microbiol | 10.1099/ijs.0.022004-0 | 2010 | Animals, Aquaculture, Chile, Chryseobacterium/*classification/genetics/*isolation & purification/physiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S/genetics, Salmo salar/*microbiology, Sequence Analysis, DNA | Genetics |
| Phylogeny | 33724914 | Kaistella gelatinilytica sp. nov., a flavobacterium isolated from Antarctic soil. | Ren X, Jiang P, Liu Z, Liang Y, Li J | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004753 | 2021 | ||
| Phylogeny | 33724915 | Kaistella flava sp. nov., isolated from Antarctic tundra soil, and emended descriptions of Kaistella yonginensis, Kaistella jeonii, Kaistella antarctica and Kaistella chaponensis. | Peng X, Zhang Y, Lu Y, Zhou X, Wei Z, Sun Y, Kuang C, Lu L, Geng Y, Qin K, Liu J, Peng F | Int J Syst Evol Microbiol | 10.1099/ijsem.0.004740 | 2021 | ||
| Phylogeny | 34541621 | Frigoriflavimonas asaccharolytica gen. nov., sp. nov., a novel psychrophilic esterase and protease producing bacterium isolated from Antarctica. | Menes RJ, Machin EV, Roldan DM, Kyrpides N, Woyke T, Whitman WB, Busse HJ | Antonie Van Leeuwenhoek | 10.1007/s10482-021-01656-x | 2021 | Antarctic Regions, Bacterial Typing Techniques, *Bacteroidetes/enzymology/isolation & purification, DNA, Bacterial/genetics, *Esterases, Fatty Acids, *Peptide Hydrolases, Phylogeny, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Vitamin K 2 | Enzymology |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 16730 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 23145) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-23145 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 29830 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26206 | 28776041 | |
| 37302 | Curators of the CIP | https://brclims.pasteur.fr/brcWeb/souche/detail/1/8261 | ||||
| 61787 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 58959) | https://www.ccug.se/strain?id=58959 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 75193 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID376080.1 | StrainInfo: A central database for resolving microbial strain identifiers | |||
| 118225 | Curators of the CIP | Collection of Institut Pasteur (CIP 110405) | https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20110405 |