Name: Chryseobacterium indoltheticum F37
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5672

Type strain:

Species: Chryseobacterium indoltheticum

Strain Designation: F37

Culture col. no.: DSM 16778, ATCC 27950, CCUG 33445, CIP 103168, LMG 4025, NCIMB 2220

Strain history: <- CIP <- NCIMB <- ATCC <- O. B. Weeks; F37 <- O. B. Williams

NCBI tax ID(s): 254 (species)

Other strains from Chryseobacterium indoltheticum

C. indoltheticum CIP 109965

Section

Chryseobacterium indoltheticum F37 is a mesophilic bacterium that was isolated from marine mud.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium indoltheticum**
	Full Scientific Name (PNU)	Chryseobacterium indoltheticum (Campbell and Williams 1951) Vandamme et al. 1994

Synonym

Flavobacterium indoltheticum

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6581]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #6581]

Culture medium growth

[Ref.: #6581]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #6581]

Culture medium composition

expand / minimize

[Ref.: #35499]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #35499]

Culture medium growth

[Ref.: #35499]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #6581]			growth	30 °C
[Ref.: #35499]			growth	30 °C

[Ref.: #6581]	Temperature range	mesophilic
[Ref.: #35499]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	L-arabinose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	maltose ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	N-acetylglucosamine ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68369]		indole ChEBI	* from API 20NE

	Physiological tests	Metabolite	Indole test
[Ref.: #68369]		indole ChEBI	-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #68369]	beta-glucosidase	+	3.2.1.21	* from API 20NE
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE

Fatty acid profile

Metadata FA analysis

Reference

[Ref.: #51524]

Fatty acid	Percentage	ECL
C15:0 ISO	35.5	14.621
C17:1 ω9c ISO	24.1	16.416
C16:1 ω7c/C15:0 ISO 2OH	13.1	15.85
C17:0 iso 3OH	8.2	18.161
unknown 13.566	7.5	13.566
C15:0 ANTEISO	5	14.711
C15:0 ISO 3OH	3	16.135
C17:0 2OH	1	18.249
C18:2 ω6,9c/C18:0 ANTE	0.8	17.724

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #51524]	7696	-	-	-	-	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6581]	Sample type/isolated from	marine mud

[Ref.: #51524]	Sample type/isolated from	Marine mud
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Aquatic	#Sediment

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY468448 (>99% sequence identity) for Chryseobacterium indoltheticum from Microbeatlas

Aquatic Samples	177
Soil Samples	309
Animal Samples	552
Plant Samples	760
Total Samples	1798

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6581]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Chryseobacterium indoltheticum 16S ribosomal RNA gene, partial sequence	M58774	1461	ENA	254 tax ID	*
[Ref.: #6581]	Chryseobacterium indoltheticum strain LMG 4025 16S ribosomal RNA gene, partial sequence	AY468448	1442	ENA	254 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium indoltheticum ATCC 27950	GCA_003815915	complete	GenBank	254 tax ID	*
[Ref.: #66792]	Chryseobacterium indoltheticum ATCC 27950	GCA_900156145	scaffold	GenBank	254 tax ID	*
[Ref.: #66792]	Chryseobacterium indoltheticum strain ATCC 27950	254.4	wgs	PATRIC	254 tax ID	*
[Ref.: #66792]	Chryseobacterium indoltheticum DSM 16778	2681813551	draft	JGI IMG/M	254 tax ID	*
[Ref.: #66792]	candidate division WWE3 bacterium HKST-UBA79	GCA_020427865	scaffold	PATRIC	2053526 tax ID	*

Availability in culture collections External links

[Ref.: #6581]

Culture collection no.

DSM 16778, ATCC 27950, CCUG 33445, CIP 103168, LMG 4025, NCIMB 2220

[Ref.: #20218]

Associated Passport(s) in StrainInfo

718917, 11532, 131583, 149796, 11531, 11533

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Pathogenicity	Influence of lipopolysaccharides and lipids A from some marine bacteria on spontaneous and Escherichia coli LPS-induced TNF-alpha release from peripheral human blood cells.	Vorobeva EV, Krasikova IN, Solov'eva TF	Biochemistry (Mosc)	10.1134/s000629790607008x	2006	*
Phylogeny	Chryseobacterium aquaticum sp. nov., isolated from a water reservoir.	Kim KK, Lee KC, Oh HM, Lee JS	Int J Syst Evol Microbiol	10.1099/ijs.0.65491-0	2008	*
Phylogeny	Chryseobacterium ginsenosidimutans sp. nov., a bacterium with ginsenoside-converting activity isolated from soil of a Rhus vernicifera-cultivated field.	Im WT, Yang JE, Kim SY, Yi TH	Int J Syst Evol Microbiol	10.1099/ijs.0.023614-0	2010	*
Phylogeny	Chryseobacterium ginsengisoli sp. nov., isolated from the rhizosphere of ginseng and emended description of Chryseobacterium gleum.	Nguyen NL, Kim YJ, Hoang VA, Yang DC	Int J Syst Evol Microbiol	10.1099/ijs.0.045427-0	2013	*
Phylogeny	Chryseobacterium solani sp. nov., isolated from field-grown eggplant rhizosphere soil.	Du J, Ngo HTT, Won K, Kim KY, Jin FX, Yi TH	Int J Syst Evol Microbiol	10.1099/ijs.0.000266	2015	*
Phylogeny	Chryseobacterium formosus sp. nov., a bacterium isolated from an ancient tree trunk.	Akter S, NGO HT, Du J, Won K, Singh H, Yin CS, Kook M, Yi TH	Arch Microbiol	10.1007/s00203-015-1137-9	2015	*
Phylogeny	Chryseobacterium mulctrae sp. nov., isolated from raw cow's milk.	Yoon SH, Lee JE, Han RH, Kwon M, Kim GB	Int J Syst Evol Microbiol	10.1099/ijsem.0.003647	2019	*

References

#6581

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16778

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#35499 ; Curators of the CIP;
#51524 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 33445

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68369

Automatically annotated from API 20NE .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

* These data were automatically processed and therefore are not curated

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