Chryseobacterium indologenes (DSM 16777, ATCC 29897, CCUG 14483)

Name: Chryseobacterium indologenes (DSM 16777, ATCC 29897, CCUG 14483)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5671

Type strain

Culture col. no. DSM 16777 ATCC 29897 CCUG 14483 CDC 3716 CIP 101026 3 more

NCBI tax ID(s) 253

Special Collections DSMZ CCUG CIP

Links

Chryseobacterium indologenes DSM 16777 is a mesophilic, Gram-negative, rod-shaped human pathogen that was isolated from human, trachea at autopsy.

Gram-negative rod-shaped mesophilic human pathogen genome sequence 16S sequence

Name and taxonomic classification

SI-ID 7821

LMG 12453,ATCC 29897,CCUG 14483,CCUG 14556,CIP 101026,IFO 14944,LMG 12454,LMG 8337,NCTC 10796,CCM 4451,CIP 101826,KCTC 2905,NBRC 14944,BCRC 17271,CCRC 17271,DSM 16777,VTT E-93496

@ref 20215

Last LPSN update 2025-12-16 09:48:07

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Weeksellaceae

Genus Chryseobacterium

Species Chryseobacterium indologenes

Full scientific name Chryseobacterium indologenes (Yabuuchi et al. 1983) Vandamme et al. 1994

Synonyms (1)

Flavobacterium indologenes

BacDive ID	Other strains from **Chryseobacterium indologenes** (58)	Type strain
134710	C. indologenes Carton, CIP 109969
134973	C. indologenes CIP 109967
135113	C. indologenes 590.83, CIP 100344
135152	C. indologenes 682.78, CIP 103065
135153	C. indologenes 279.75, CIP 103069
135157	C. indologenes R 852, CIP 103094
135158	C. indologenes R 851, CIP 103095
135159	C. indologenes R 627, CIP 103096
135188	C. indologenes 189.79, CIP 103055
135788	C. indologenes 33.78, B53981, CIP 78.48
135833	C. indologenes 522.84, CIP 100992
135857	C. indologenes 162-86, CIP 102215
136164	C. indologenes 729, 648.75, CIP 103074
136172	C. indologenes R 705, CIP 103102
136234	C. indologenes CIP 103626, ATCC 49471
137230	C. indologenes 2398, R 858, CIP 103092
137346	C. indologenes 469.83, CIP 100269
137815	C. indologenes 215.84, CIP 100761
137991	C. indologenes 419-86, CIP 102419
138406	C. indologenes R 760, CIP 103101
138609	C. indologenes 241.75, CIP 103068
138769	C. indologenes 638.75, CIP 103072
139084	C. indologenes 792.84, CIP 101166
139440	C. indologenes 177-77, CIP 111041
139448	C. indologenes Millo, CIP 111085, CIP 200792
139449	C. indologenes Rouault 2401, CIP 111087, CIP 200799
139450	C. indologenes Big, CIP 111080, CIP 200737
139451	C. indologenes Kac, CIP 111083, CIP 200783
139452	C. indologenes Gallet, CIP 111084, CIP 200791
139478	C. indologenes CIP 111070, CIP 200648
139479	C. indologenes Lair, CIP 111074, CIP 200703
139512	C. indologenes Tchang, CIP 111068, CIP 200630
139513	C. indologenes Delvoix, CIP 111069, CIP 200634
139514	C. indologenes Ben, CIP 111073, CIP 200683
139553	C. indologenes Bordin, CIP 111079, CIP 200726
139599	C. indologenes Gouélian, CIP 109982
142408	C. indologenes CCUG 12408
143842	C. indologenes CCUG 21463
144077	C. indologenes CCUG 22795
144636	C. indologenes CCUG 25993
144828	C. indologenes CCUG 26680
147966	C. indologenes CCUG 34592
149934	C. indologenes CCUG 38711
150974	C. indologenes CCUG 42919
150985	C. indologenes CCUG 42938
151781	C. indologenes CCUG 44868
152178	C. indologenes CCUG 45982
152707	C. indologenes CCUG 47431
153574	C. indologenes CCUG 50232
154777	C. indologenes CCUG 55149
156350	C. indologenes CCUG 61253
156754	C. indologenes CCUG 64871
172960	C. indologenes CIP 109978, Van Dick
172961	C. indologenes R647, Peslerbe, CIP 109988
172962	C. indologenes Rouault 2398, CIP 111086, CIP 200798
175138	C. indologenes Dres_ChryseobactSp_12, DSM 107724
175139	C. indologenes Dres_ChryseobactSp_14, DSM 107732
176846	C. indologenes NiuAA5, DSM 114485

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
120095	negative	rod-shaped
125438			91
125438	negative		98.455
125439	negative		99.6

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6580	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
34489	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
120095	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
6580	positive	growth	30	mesophilic
34489	positive	growth	30	mesophilic
120095	positive	growth	30	mesophilic
120095	negative	growth	41

Physiology and metabolism

Spore formation

@ref	Spore formation	Confidence
125439		96.3

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	18305 ChEBI	arbutin	-	builds acid from	from API 50CH acid
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	-	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	-	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	-	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	-	builds acid from	from API 50CH acid
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	-	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	-	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	-	builds acid from	from API 50CH acid
68371	17113 ChEBI	erythritol	-	builds acid from	from API 50CH acid
120095	4853 ChEBI	esculin	+	hydrolysis
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68371	17754 ChEBI	glycerol	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	-	builds acid from	from API 50CH acid
68371	18403 ChEBI	L-arabitol	-	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	-	builds acid from	from API 50CH acid
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68371	17716 ChEBI	lactose	-	builds acid from	from API 50CH acid
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	-	builds acid from	from API 50CH acid
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	-	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	-	builds acid from	from API 50CH acid
68371	59640 ChEBI	N-acetylglucosamine	-	builds acid from	from API 50CH acid
120095	17632 ChEBI	nitrate	-	reduction
120095	16301 ChEBI	nitrite	-	reduction
68371		Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	-	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	-	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	-	builds acid from	from API 50CH acid
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68371	32528 ChEBI	turanose	-	builds acid from	from API 50CH acid
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is antibiotic	Is sensitive	Is resistant
120095	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite	Production
120095	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
120095	alcohol dehydrogenase	-	1.1.1.1
120095	beta-galactosidase	+	3.2.1.23
120095	catalase	+	1.11.1.6
120095	lysine decarboxylase	-	4.1.1.18
120095	ornithine decarboxylase	-	4.1.1.17
120095	oxidase	+
120095	tween esterase	+
120095	urease	-	3.5.1.5

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
120095	not determinedn.d.	-	-	-	-	-	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	+/-	-	+	-	-	+	-	-	-	+	-	-	-	+/-	+/-	-	+	-	-	-	-	-	-	-	-	-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
120095	not determinedn.d.	+	+	-	+	+	-	-	-	-	+	+	-	-	-	-	-	+	-	+	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	+	-	-	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Human	-
#Host Body-Site	#Oral cavity and airways	#Trachea

Isolation

@ref	Sample type	Isolation date
6580	human, trachea at autopsy
120095	Human, Trachea at autopsy	1958

Taxonmaps

69479

Global distribution of 16S sequence LN681561 (>99% sequence identity) for Chryseobacterium indologenes from Microbeatlas

Aquatic Samples	70
Soil Samples	8
Animal Samples	270
Plant Samples	12
Total Samples	360

Interaction and safety

Risk assessment

@ref	Pathogenicity human	Pathogenicity animal	Biosafety level	Biosafety level comment
6580			2	Risk group (German classification) According to TRBA 466
120095			1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	42552_F01 assembly for Chryseobacterium indologenes NCTC10796	contig	GCA_900460995	253.52	2816332551	253	78.98
66792	IMG-taxon 2687453795 annotated assembly for Chryseobacterium indologenes DSM 16777	contig	GCA_900113975	253.88	2687453795	253	76.52
66792	ASM1602505v1 assembly for Chryseobacterium indologenes DSM 16777	complete	GCA_016025055	253.154	8003924288	253	64.54

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Chryseobacterium indologenes partial 16S rRNA gene, strain LMG 8337	AM232813	1422	253
20218	Chryseobacterium indologenes strain ATCC 29897 16S-23S ribosomal RNA intergenic spacer, complete sequence	EU014570	691	253
20218	Chryseobacterium indologenes 16S ribosomal RNA gene, partial sequence	M58773	1466	253
6580	Chryseobacterium indologenes partial 16S rRNA gene, type strain DSM 16777T	LN681561	1469	1218103
124043	Chryseobacterium indologenes strain DSM 16777 16S ribosomal RNA gene, partial sequence.	MT823302	721	253
124043	Chryseobacterium indologenes strain LMG 8337 16S ribosomal RNA gene, partial sequence.	AY468450	1162	253

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Chryseobacterium indologenes strain DSM 16777
PATRIC: 253.154

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.30	no
125439	motility	BacteriaNetⓘ	no	72.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.60	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	81.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Chryseobacterium indologenes DSM 16777
NCBI: GCA_016025055.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.46	no
125438	anaerobic	anaerobicⓘ	no	97.35	no
125438	aerobic	aerobicⓘ	yes	86.79	no
125438	spore-forming	spore-formingⓘ	no	87.89	no
125438	thermophilic	thermophileⓘ	no	97.50	yes
125438	flagellated	motile2+ⓘ	no	91.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Genomic Insights into Emerging Multidrug-Resistant Chryseobacterium indologenes Strains: First Report from Thailand.	Yinsai O, Yuantrakul S, Srisithan P, Zhou W, Chittaprapan S, Intajak N, Kruayoo T, Khamnoi P, Tongjai S, Duangsonk K.	Antibiotics (Basel)	10.3390/antibiotics14080746	2025
Genetics	Isolation, characterization, and genomic analysis of a novel bacteriophage MA9V-1 infecting Chryseobacterium indologenes: a pathogen of Panax notoginseng root rot.	Zou H, Ding Y, Shang J, Ma C, Li J, Yang Y, Cui X, Zhang J, Ji G, Wei Y.	Front Microbiol	10.3389/fmicb.2023.1251211	2023
Phylogeny	Comparison of four automated microbiology systems with 16S rRNA gene sequencing for identification of Chryseobacterium and Elizabethkingia species.	Lin JN, Lai CH, Yang CH, Huang YH, Lin HF, Lin HH.	Sci Rep	10.1038/s41598-017-14244-9	2017
Enzymology	Comprehensive Laboratory Evaluation of a Specific Lateral Flow Assay for the Presumptive Identification of Francisella tularensis in Suspicious White Powders and Aerosol Samples.	Pillai SP, DePalma L, Prentice KW, Ramage JG, Chapman C, Sarwar J, Parameswaran N, Petersen J, Yockey B, Young J, Singh A, Pillai CA, Manickam G, Thirunavkkarasu N, Avila JR, Sharma S, Morse SA, Venkateswaran K, Anderson K, Hodge DR.	Health Secur	10.1089/hs.2019.0151	2020
Enzymology	Comprehensive Laboratory Evaluation of a Lateral Flow Assay for the Detection of Yersinia pestis.	Prentice KW, DePalma L, Ramage JG, Sarwar J, Parameswaran N, Petersen J, Yockey B, Young J, Joshi M, Thirunavvukarasu N, Singh A, Chapman C, Avila JR, Pillai CA, Manickam G, Sharma SK, Morse SA, Venkateswaran KV, Anderson K, Hodge DR, Pillai SP.	Health Secur	10.1089/hs.2019.0094	2019
Enzymology	Comprehensive Laboratory Evaluation of a Highly Specific Lateral Flow Assay for the Presumptive Identification of Bacillus anthracis Spores in Suspicious White Powders and Environmental Samples.	Ramage JG, Prentice KW, DePalma L, Venkateswaran KS, Chivukula S, Chapman C, Bell M, Datta S, Singh A, Hoffmaster A, Sarwar J, Parameswaran N, Joshi M, Thirunavkkarasu N, Krishnan V, Morse S, Avila JR, Sharma S, Estacio PL, Stanker L, Hodge DR, Pillai SP.	Health Secur	10.1089/hs.2016.0041	2016
Enzymology	EBR-1, a novel Ambler subclass B1 beta-lactamase from Empedobacter brevis.	Bellais S, Girlich D, Karim A, Nordmann P.	Antimicrob Agents Chemother	10.1128/aac.46.10.3223-3227.2002	2002
Pathogenicity	Genetic-biochemical analysis and distribution of the Ambler class A beta-lactamase CME-2, responsible for extended-spectrum cephalosporin resistance in Chryseobacterium (Flavobacterium) meningosepticum.	Bellais S, Poirel L, Naas T, Girlich D, Nordmann P.	Antimicrob Agents Chemother	10.1128/aac.44.1.1-9.2000	2000
Genetics	Non-Rhizobial Endophytes (NREs) of the Nodule Microbiome Have Synergistic Roles in Beneficial Tripartite Plant-Microbe Interactions.	Hassen AI, Muema EK, Diale MO, Mpai T, Bopape FL.	Microorganisms	10.3390/microorganisms13030518	2025
	Pathogenic shifts in endogenous microbiota impede tissue regeneration via distinct activation of TAK1/MKK/p38.	Arnold CP, Merryman MS, Harris-Arnold A, McKinney SA, Seidel CW, Loethen S, Proctor KN, Guo L, Sanchez Alvarado A.	Elife	10.7554/elife.16793	2016
	Rapid focused sequencing: a multiplexed assay for simultaneous detection and strain typing of Bacillus anthracis, Francisella tularensis, and Yersinia pestis.	Turingan RS, Thomann HU, Zolotova A, Tan E, Selden RF.	PLoS One	10.1371/journal.pone.0056093	2013
Enzymology	Characterization of CIA-1, an Ambler class A extended-spectrum beta-lactamase from Chryseobacterium indologenes.	Matsumoto T, Nagata M, Ishimine N, Kawasaki K, Yamauchi K, Hidaka E, Kasuga E, Horiuchi K, Oana K, Kawakami Y, Honda T	Antimicrob Agents Chemother	10.1128/AAC.05165-11	2011
Pathogenicity	Genetic diversity of carbapenem-hydrolyzing metallo-beta-lactamases from Chryseobacterium (Flavobacterium) indologenes.	Bellais S, Poirel L, Leotard S, Naas T, Nordmann P	Antimicrob Agents Chemother	10.1128/AAC.44.11.3028-3034.2000	2000
Phylogeny	Polar lipid characterization and description of Chryseobacterium capnotolerans sp. nov., isolated from high CO2-containing atmosphere and emended descriptions of the genus Chryseobacterium, and the species C. balustinum, C. daecheongense, C. formosense, C. gleum, C. indologenes, C. joostei, C. scophthalmum and C. ureilyticum.	Heidler von Heilborn D, Nover LL, Weber M, Holzl G, Gisch N, Waldhans C, Mittler M, Kreyenschmidt J, Woehle C, Huttel B, Lipski A	Int J Syst Evol Microbiol	10.1099/ijsem.0.005372	2022
Phylogeny	Chryseobacterium cucumeris sp. nov., an endophyte isolated from cucumber (Cucumis sativus L.) root, and emended description of Chryseobacterium arthrosphaerae.	Jeong JJ, Lee DW, Park B, Sang MK, Choi IG, Kim KD	Int J Syst Evol Microbiol	10.1099/ijsem.0.001670	2017
Phylogeny	Chryseobacterium viscerum sp. nov., isolated from diseased fish.	Zamora L, Vela AI, Palacios MA, Sanchez-Porro C, Svensson-Stadler LA, Dominguez L, Moore ERB, Ventosa A, Fernandez-Garayzabal JF	Int J Syst Evol Microbiol	10.1099/ijs.0.036699-0	2012
Phylogeny	Chryseobacterium vietnamense sp. nov., isolated from forest soil.	Li Z, Zhu H	Int J Syst Evol Microbiol	10.1099/ijs.0.027201-0	2011
Phylogeny	Chryseobacterium aquifrigidense sp. nov., isolated from a water-cooling system.	Park SC, Kim MS, Baik KS, Kim EM, Rhee MS, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.65475-0	2008

References

#6580	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16777
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#34489	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#68371	Automatically annotated from API 50CH acid .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#120095	Collection of Institut Pasteur ; Curators of the CIP; CIP 101026
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Chryseobacterium indologenes (DSM 16777, ATCC 29897, CCUG 14483)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Spore formation

Metabolite utilization

Antibiotic resistance

Metabolite production

Enzymes

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900460995

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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