Strain identifier

BacDive ID: 5672

Type strain: Yes

Species: Chryseobacterium indoltheticum

Strain Designation: F37

Strain history: <- CIP <- NCIMB <- ATCC <- O. B. Weeks; F37 <- O. B. Williams

NCBI tax ID(s): 254 (species)

For citation purpose refer to the digital object identifier (doi) of the current version.
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General

@ref: 6581

BacDive-ID: 5672

DSM-Number: 16778

keywords: mesophilic, Bacteria, 16S sequence, genome sequence

description: Chryseobacterium indoltheticum F37 is a mesophilic bacterium that was isolated from marine mud.

NCBI tax id

  • NCBI tax id: 254
  • Matching level: species

strain history: <- CIP <- NCIMB <- ATCC <- O. B. Weeks; F37 <- O. B. Williams

doi: 10.13145/bacdive5672.20220920.7

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Weeksellaceae
  • genus: Chryseobacterium
  • species: Chryseobacterium indoltheticum
  • full scientific name: Chryseobacterium indoltheticum (Campbell and Williams 1951) Vandamme et al. 1994
  • synonyms

    • @ref: 20215
    • synonym: Flavobacterium indoltheticum

@ref: 6581

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Weeksellaceae

genus: Chryseobacterium

species: Chryseobacterium indoltheticum

full scientific name: Chryseobacterium indoltheticum (Campbell and Williams 1951) Vandamme et al. 1994 emend. Wu et al. 2013

strain designation: F37

type strain: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6581TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://bacmedia.dsmz.de/medium/92Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
35499MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)

culture temp

@refgrowthtypetemperaturerange
6581positivegrowth30mesophilic
35499positivegrowth30mesophilic

Physiology and metabolism

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
6836925115malate-assimilation
6836917128adipate-assimilation
6836927689decanoate-assimilation
6836924265gluconate-assimilation
6836917306maltose-assimilation
6836959640N-acetylglucosamine-assimilation
6836916899D-mannitol-assimilation
6836916024D-mannose-assimilation
6836930849L-arabinose-assimilation
6836917634D-glucose-assimilation
683695291gelatin+hydrolysis
683694853esculin+hydrolysis
6836916199urea-hydrolysis
6836929016arginine-hydrolysis
6836917634D-glucose-fermentation
6836927897tryptophan-energy source
6836917632nitrate-reduction

metabolite production

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

metabolite tests

  • @ref: 68369
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: -

enzymes

@refvalueactivityec
68369cytochrome oxidase+1.9.3.1
68369gelatinase+
68369beta-glucosidase+3.2.1.21
68369urease-3.5.1.5
68369arginine dihydrolase-3.5.3.6

fatty acid profile

  • fatty acids

    @reffatty acidpercentageECL
    51524C15:0 ANTEISO514.711
    51524C15:0 ISO35.514.621
    51524C15:0 ISO 3OH316.135
    51524C16:1 ω7c/C15:0 ISO 2OH13.115.85
    51524C17:0 2OH118.249
    51524C17:0 iso 3OH8.218.161
    51524C17:1 ω9c ISO24.116.416
    51524C18:2 ω6,9c/C18:0 ANTE0.817.724
    51524unknown 13.5667.513.566
  • type of FA analysis: whole cell analysis
  • method/protocol: CCUG

API 20NE

@refNO3TRPGLU_ FermADH ArgUREESCGELPNPGGLU_ AssimARAMNEMANNAGMALGNTCAPADIMLTCITPACOX
51524-----++-------------+

Isolation, sampling and environmental information

isolation

@refsample type
6581marine mud
51524Marine mud

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Mud (Sludge)
#Environmental#Aquatic#Sediment

Safety information

risk assessment

  • @ref: 6581
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Chryseobacterium indoltheticum 16S ribosomal RNA gene, partial sequenceM587741461ena254
6581Chryseobacterium indoltheticum strain LMG 4025 16S ribosomal RNA gene, partial sequenceAY4684481442ena254

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Chryseobacterium indoltheticum ATCC 27950GCA_003815915completencbi254
66792Chryseobacterium indoltheticum ATCC 27950GCA_900156145scaffoldncbi254
66792Chryseobacterium indoltheticum strain ATCC 27950254.4wgspatric254
66792Chryseobacterium indoltheticum DSM 167782681813551draftimg254

External links

@ref: 6581

culture collection no.: DSM 16778, ATCC 27950, CCUG 33445, CIP 103168, LMG 4025, NCIMB 2220

straininfo link

@refpassport
20218http://www.straininfo.net/strains/718917
20218http://www.straininfo.net/strains/11532
20218http://www.straininfo.net/strains/131583
20218http://www.straininfo.net/strains/149796
20218http://www.straininfo.net/strains/11531
20218http://www.straininfo.net/strains/11533

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Pathogenicity16903830Influence of lipopolysaccharides and lipids A from some marine bacteria on spontaneous and Escherichia coli LPS-induced TNF-alpha release from peripheral human blood cells.Vorobeva EV, Krasikova IN, Solov'eva TFBiochemistry (Mosc)10.1134/s000629790607008x2006Animals, Dose-Response Relationship, Drug, Endotoxins/antagonists & inhibitors, Enzyme-Linked Immunosorbent Assay, Escherichia coli/cytology/metabolism, Gram-Negative Bacteria/cytology/*metabolism, Humans, Leukocytes, Mononuclear/drug effects/*immunology, Lipid A/chemistry/*pharmacology/toxicity, Lipopolysaccharides/antagonists & inhibitors/*pharmacology/toxicity, Mice, Tumor Necrosis Factor-alpha/*metabolismMetabolism
Phylogeny18319450Chryseobacterium aquaticum sp. nov., isolated from a water reservoir.Kim KK, Lee KC, Oh HM, Lee JSInt J Syst Evol Microbiol10.1099/ijs.0.65491-02008Bacterial Typing Techniques, Chryseobacterium/*classification/genetics/isolation & purification/physiology, DNA, Bacterial/analysis, DNA, Ribosomal/analysis, Fatty Acids/analysis, Fresh Water/*microbiology, Genes, rRNA, Genotype, Korea, Molecular Sequence Data, Phenotype, RNA, Ribosomal, 16S/genetics, Sequence Analysis, DNA, Species SpecificityGenetics
Phylogeny20656821Chryseobacterium ginsenosidimutans sp. nov., a bacterium with ginsenoside-converting activity isolated from soil of a Rhus vernicifera-cultivated field.Im WT, Yang JE, Kim SY, Yi THInt J Syst Evol Microbiol10.1099/ijs.0.023614-02010Aerobiosis, Base Composition, Chryseobacterium/*classification/genetics/*isolation & purification/physiology, Cluster Analysis, DNA, Bacterial/chemistry/genetics, DNA, Ribosomal/chemistry/genetics, Fatty Acids/analysis, Ginsenosides/*metabolism, Hydrogen-Ion Concentration, Korea, Molecular Sequence Data, Nucleic Acid Hybridization, Phylogeny, Quinones/analysis, RNA, Ribosomal, 16S/genetics, Rhus/growth & development, Sequence Analysis, DNA, Sodium Chloride/metabolism, *Soil Microbiology, Temperature, beta-Glucosidase/metabolismMetabolism
Phylogeny23378110Chryseobacterium ginsengisoli sp. nov., isolated from the rhizosphere of ginseng and emended description of Chryseobacterium gleum.Nguyen NL, Kim YJ, Hoang VA, Yang DCInt J Syst Evol Microbiol10.1099/ijs.0.045427-02013Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Molecular Sequence Data, Nucleic Acid Hybridization, Panax/*microbiology, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, Soil Microbiology, Vitamin K 2/analogs & derivatives/analysisGenetics
Phylogeny25878202Chryseobacterium solani sp. nov., isolated from field-grown eggplant rhizosphere soil.Du J, Ngo HTT, Won K, Kim KY, Jin FX, Yi THInt J Syst Evol Microbiol10.1099/ijs.0.0002662015Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Molecular Sequence Data, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, *Rhizosphere, Sequence Analysis, DNA, *Soil Microbiology, Solanum melongena/*microbiology, Vitamin K 2/analogs & derivatives/chemistryGenetics
Phylogeny26210236Chryseobacterium formosus sp. nov., a bacterium isolated from an ancient tree trunk.Akter S, NGO HT, Du J, Won K, Singh H, Yin CS, Kook M, Yi THArch Microbiol10.1007/s00203-015-1137-92015Bacterial Typing Techniques, Base Composition, Chryseobacterium/*classification/genetics/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/analysis, Molecular Sequence Data, Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Species Specificity, Trees/*microbiologyGenetics
Phylogeny31424383Chryseobacterium mulctrae sp. nov., isolated from raw cow's milk.Yoon SH, Lee JE, Han RH, Kwon M, Kim GBInt J Syst Evol Microbiol10.1099/ijsem.0.0036472019Animals, Bacterial Typing Techniques, Base Composition, Cattle, Chryseobacterium/*classification/isolation & purification, DNA, Bacterial/genetics, Fatty Acids/chemistry, Female, Milk/*microbiology, Nucleic Acid Hybridization, Phosphatidylethanolamines/chemistry, *Phylogeny, RNA, Ribosomal, 16S/genetics, Republic of Korea, Sequence Analysis, DNA, Vitamin K 2/analogs & derivatives/chemistryTranscriptome

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6581Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16778)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16778
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
35499Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/14936
51524Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 33445)https://www.ccug.se/strain?id=33445
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
68369Automatically annotated from API 20NE