Name: Chryseobacterium sp. DSM 5567
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5666

Type strain:

Species: Chryseobacterium sp.

Culture col. no.: DSM 5567, ATCC 29898, NCTC 10797

Strain history: <- ATCC (Flavobacterium sp.) <- CDC <- F. Fargo. Deposited as a strain of Chryseobacterium gleum

NCBI tax ID(s): 1871047 (species)

SI-ID 7840

LMG 12430, ATCC 29898, CCUG 11879, LMG 8336, NCTC 10797, DSM 5567, CCM 2721

Special Collections

DSMZ

Other strains from Chryseobacterium sp.

Section

Chryseobacterium sp. DSM 5567 is a Gram-negative bacterium that was isolated from drinking fountain.

Gram-negative
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Full Scientific Name (LPSN)	Chryseobacterium Vandamme et al. 1994

	Synonym	Halpernia
	Synonym	Sejongia
	Synonym	Soonwooa
	Synonym	Kaistella
	Synonym	Planobacterium
	Synonym	Epilithonimonas

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99

Information on culture and growth conditions Culture and growth conditions

[Ref.: #2223]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #2223]

Culture medium growth

[Ref.: #2223]

Culture medium link

Medium recipe at MediaDive

[Ref.: #2223]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #2223]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

Note that the displayed test results represent raw data and therefore may deviate!

Antibiotic susceptibility testing

Test 1

Reference

[Ref.: #2223]
Mueller-Hinton Agar



yes
Inhibition zone diameter in mm
20
10-12
18
34
40-42
22
14
32-34
resistant0
40
32
34-36
10
10
24
26
34
40
32-34
10
24-26
28
10-12
14
24
16-18
34
28-30
42-44
resistant0
48
26-28
resistant0
20
20
42

Only first 15 entries are displayed. Click here to see all.

[Ref.: #69480]	Ability of spore formation	no Confidence in %91.245
[Ref.: #69481]	Ability of spore formation	no Confidence in %100

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #2223]	Sample type/isolated from	drinking fountain
* marker position based on {}

Isolation sources categories

#Engineered	#Built environment	-
#Environmental	#Aquatic	-

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Chryseobacterium gleum strain 3012STDY6944375	250.34	complete	PATRIC	250 tax ID	*
[Ref.: #66792]	Chryseobacterium sp. FDAARGOS 1104 strain FDAARGOS_1104	2778077.3	complete	PATRIC	2778077 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chryseobacterium sp. FDAARGOS 1104 strain FDAARGOS_1104 strain Not applicable PATRIC: 2778077.3
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium gleum strain 3012STDY6944375 PATRIC: 250.34
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	97.8	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	91.245	no
[Ref.: #69480]	aerobic	aerobicⓘ	yes	84.217	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	96.143	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	89.5	no

Availability in culture collections External links

[Ref.: #2223]

Culture collection no.

DSM 5567, ATCC 29898, NCTC 10797

[Ref.: #75148]

SI-ID 7840

References

#2223

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5567

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75148

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID7840.1 )

* These data were automatically processed and therefore are not curated

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Search for species Chryseobacterium sp. in external resources:
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BRENDA
PANGAEA
GBIF

Chryseobacterium sp. FDAARGOS 1104 strain FDAARGOS_1104 strain Not applicable

Chryseobacterium gleum strain 3012STDY6944375

Change proposal

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