Name: Chryseobacterium gleum F93
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5667

Type strain:

Species: Chryseobacterium gleum

Strain Designation: F93

Culture col. no.: DSM 16776, ATCC 35910, CCUG 14555, CIP 103039, JCM 2410, LMG 8334, NCTC 11432, IFO 15054, LMG 12447, NBRC 15054

Strain history: B. Holmes F93.

NCBI tax ID(s): 525257 (strain), 250 (species)

Other strains from Chryseobacterium gleum

C. gleum CIP 103079
C. gleum CIP 103063
C. gleum CIP 102903
C. gleum CIP 103086
C. gleum CIP 102964
C. gleum CIP 103088
C. gleum CIP 100531
C. gleum CIP 100844
C. gleum CCUG 1190
C. gleum CCUG 1203
C. gleum CCUG 18269
C. gleum CCUG 18270
C. gleum CCUG 18271, NCTC 11433, JCM 2411
C. gleum CCUG 22176, NCTC 10795, JCM 2409, ...
C. gleum CCUG 28182

Section

Chryseobacterium gleum F93 is an aerobe, mesophilic bacterium that was isolated from human, high vaginal swab.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Weeksellaceae*
	Genus	*Chryseobacterium*
	Species	**Chryseobacterium gleum**
	Full Scientific Name (PNU)	Chryseobacterium gleum (Holmes et al. 1984) Vandamme et al. 1994

Synonym

Flavobacterium gleum

Information on morphological and physiological properties Morphology

[Ref.: #69480]

Gram stain

negative Confidence in %99.978

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6579]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #6579]

Culture medium growth

[Ref.: #6579]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #6579]

Culture medium composition

expand / minimize

[Ref.: #40516]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #40516]

Culture medium growth

[Ref.: #40516]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6579]	growth	30 °C
[Ref.: #40516]	growth	30 °C
[Ref.: #46133]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #6579]	Temperature range	mesophilic
[Ref.: #40516]	Temperature range	mesophilic
[Ref.: #46133]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #46133]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.996

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6579]	Sample type/isolated from	human, high vaginal swab
[Ref.: #6579]	Geographic location (country and/or sea, region)	London
[Ref.: #6579]	Country	United Kingdom
[Ref.: #6579]	Country ISO 3 Code	GBR
[Ref.: #6579]	Continent	Europe

[Ref.: #46133]	Sample type/isolated from	Human vagina,high vaginal swab
[Ref.: #46133]	Country	United Kingdom
[Ref.: #46133]	Country ISO 3 Code	GBR
[Ref.: #46133]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	High vaginal swab
* marker position based on {}

Isolation sources categories

#Infection	#Patient	#Swab
#Host	#Human	-
#Host Body-Site	#Urogenital tract	#Vagina

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6579]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6579]	Chryseobacterium gleum strain LMG 8334 16S ribosomal RNA gene, partial sequence	AY468449	1294	ENA	525257 tax ID
[Ref.: #20218]	F.gleum (NCTC 11432T) gene for 16S rRNA	X67852	665	ENA	250 tax ID	*
[Ref.: #20218]	Chryseobacterium gleum partial 16S rRNA gene, strain CCUG 14555	AM232812	1438	ENA	250 tax ID	*
[Ref.: #20218]	Chryseobacterium gleum 16S ribosomal RNA gene, partial sequence	M58772	1464	ENA	250 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Chryseobacterium gleum strain NCTC11432 genome assembly, chromosome: 1	LR134289		ENA	250 tax ID
[Ref.: #66792]	Chryseobacterium gleum NCTC11432	GCA_900636535	complete	GenBank	250 tax ID	*
[Ref.: #66792]	Chryseobacterium gleum ATCC 35910	525257.3	wgs	PATRIC	525257 tax ID	*
[Ref.: #66792]	Chryseobacterium gleum strain FDAARGOS_1103 strain Not applicable	250.40	complete	PATRIC	250 tax ID	*
[Ref.: #66792]	Chryseobacterium gleum strain NCTC11432	250.7	complete	PATRIC	250 tax ID	*
[Ref.: #66792]	Chryseobacterium gleum F93, ATCC 35910	2562617092	draft	JGI IMG/M	525257 tax ID	*

[Ref.: #6579]	GC-content	36.8 mol%	sequence analysis
[Ref.: #67770]	GC-content	36.6-38.6 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Chryseobacterium gleum NCTC11432 NCBI: GCA_900636535.1
[Ref.: #69480]	spore-forming	no	99.996	no
[Ref.: #69480]	anaerobic	no	99.569	no
[Ref.: #69480]	gram-positive	no	99.978	yes
[Ref.: #69480]	thermophile	no	99.983	yes
[Ref.: #69480]	motile	no	87.12	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Chryseobacterium gleum NCTC11432 NCBI: GCA_900636535.1
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #6579]

Culture collection no.

DSM 16776, ATCC 35910, CCUG 14555, CIP 103039, JCM 2410, LMG 8334, NCTC 11432, IFO 15054, LMG 12447, NBRC 15054

[Ref.: #20218]

Associated Passport(s) in StrainInfo

718915, 31842, 31843, 31844, 31847, 31848, 31849

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Polar lipid characterization and description of Chryseobacterium capnotolerans sp. nov., isolated from high CO2-containing atmosphere and emended descriptions of the genus Chryseobacterium, and the species C. balustinum, C. daecheongense, C. formosense, C. gleum, C. indologenes, C. joostei, C. scophthalmum and C. ureilyticum.	Heidler von Heilborn D, Nover LL, Weber M, Holzl G, Gisch N, Waldhans C, Mittler M, Kreyenschmidt J, Woehle C, Huttel B, Lipski A	Int J Syst Evol Microbiol	10.1099/ijsem.0.005372	2022	*
Pathogenicity	Identification and Biosynthesis of Pro-Inflammatory Sulfonolipids from an Opportunistic Pathogen Chryseobacterium gleum.	Hou L, Tian HY, Wang L, Ferris ZE, Wang J, Cai M, Older EA, Raja MRK, Xue D, Sun W, Nagarkatti P, Nagarkatti M, Chen H, Fan D, Tang X, Li J	ACS Chem Biol	10.1021/acschembio.2c00141	2022	*
Phylogeny	Chryseobacterium candidae sp. nov., isolated from a yeast (Candida tropicalis).	B I, G K, N S, A S, Ch S, Ch V R	Int J Syst Evol Microbiol	10.1099/ijsem.0.003716	2020	*
Phylogeny	Chryseobacterium pennipullorum sp. nov., isolated from poultry feather waste.	Oosthuizen L, Charimba G, Hitzeroth A, Nde AL, Steyn L, Newman J, Hugo C	Int J Syst Evol Microbiol	10.1099/ijsem.0.003491	2019	*
Phylogeny	Chryseobacterium cucumeris sp. nov., an endophyte isolated from cucumber (Cucumis sativus L.) root, and emended description of Chryseobacterium arthrosphaerae.	Jeong JJ, Lee DW, Park B, Sang MK, Choi IG, Kim KD	Int J Syst Evol Microbiol	10.1099/ijsem.0.001670	2017	*
Phylogeny	Chryseobacterium artocarpi sp. nov., isolated from the rhizosphere soil of Artocarpus integer.	Venil CK, Nordin N, Zakaria ZA, Ahmad WA	Int J Syst Evol Microbiol	10.1099/ijs.0.063594-0	2014	*
Enzymology	Cloning, expression and biochemical characterization of the cholesterol oxidase CgChoA from Chryseobacterium gleum.	Reiss R, Faccio G, Thony-Meyer L, Richter M	BMC Biotechnol	10.1186/1472-6750-14-46	2014	*
Phylogeny	Chryseobacterium viscerum sp. nov., isolated from diseased fish.	Zamora L, Vela AI, Palacios MA, Sanchez-Porro C, Svensson-Stadler LA, Dominguez L, Moore ERB, Ventosa A, Fernandez-Garayzabal JF	Int J Syst Evol Microbiol	10.1099/ijs.0.036699-0	2012	*
Phylogeny	Chryseobacterium arthrosphaerae sp. nov., isolated from the faeces of the pill millipede Arthrosphaera magna Attems.	Kampfer P, Arun AB, Young CC, Chen WM, Sridhar KR, Rekha PD	Int J Syst Evol Microbiol	10.1099/ijs.0.016840-0	2009	*
Phylogeny	Chryseobacterium aquifrigidense sp. nov., isolated from a water-cooling system.	Park SC, Kim MS, Baik KS, Kim EM, Rhee MS, Seong CN	Int J Syst Evol Microbiol	10.1099/ijs.0.65475-0	2008	*
Enzymology	Genetic and biochemical characterization of CGB-1, an Ambler class B carbapenem-hydrolyzing beta-lactamase from Chryseobacterium gleum.	Bellais S, Naas T, Nordmann P	Antimicrob Agents Chemother	10.1128/AAC.46.9.2791-2796.2002	2002	*
Genetics	Molecular and biochemical characterization of Ambler class A extended-spectrum beta-lactamase CGA-1 from Chryseobacterium gleum.	Bellais S, Naas T, Nordmann P	Antimicrob Agents Chemother	10.1128/AAC.46.4.966-970.2002	2002	*

References

#6579

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16776

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#40516 ; Curators of the CIP;
#46133 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 14555

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Chryseobacterium gleum in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Chryseobacterium gleum NCTC11432

Chryseobacterium gleum NCTC11432

Change proposal

Change proposal