Flavobacterium araucananum (DSM 24704, CCM 7939, CCUG 61031)

Name: Flavobacterium araucananum (DSM 24704, CCM 7939, CCUG 61031)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5585

Type strain

Strain Designation LM-19-Fp

Culture col. no. DSM 24704 CCM 7939 CCUG 61031 LMG 26359 LM-19-Fp

NCBI tax ID(s) 946678

Special Collections DSMZ CCUG Literature strains

History <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; LM19-Fp <- R. Avendano-Herrera

Links

Flavobacterium araucananum LM-19-Fp is an aerobe, Gram-negative, motile bacterium that was isolated from kidney of a diseased Atlantic salmon from a fish farm.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 376917

LMG 26359,CCM 7939,CCUG 61031,DSM 24704

@ref 20215

Last LPSN update 2026-02-09 11:19:00

Domain Bacteria

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium araucananum

Full scientific name Flavobacterium araucananum Kämpfer et al. 2012

BacDive ID	Other strains from **Flavobacterium araucananum** (4)	Type strain
5584	F. araucananum LM-20-Fp, DSM 24703
100581	F. araucananum SF000870(FSU),
100582	F. araucananum SF000960(FSU),
156272	F. araucananum CCUG 60971, LMG 26331

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
30323	negative	1.25 µm	0.9 µm	rod-shaped	gliding
125438						93
125438	negative					98.682
125439	negative					99.9

Colony morphology

62522

Incubation period2 days

Pigmentation

30323

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17734	R2A MEDIUM (DSMZ Medium 830)		Medium recipe at MediaDive	Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17734	positive	growth	28
30323	positive	growth	4-30
30323	positive	optimum	27.5
62522	positive	growth	20

Culture pH

@ref	Ability	Type	PH	PH range
30323	positive	optimum	7.5
30323	positive	growth	6.5-8.5	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
30323	aerobe
62522	aerobe
125439	obligate aerobe	94.6

Spore formation

@ref	Spore formation	Confidence
30323
125439		99.4

Halophily

@ref	Salt	Growth	Tested relation	Concentration
30323	NaCl	positive	growth	0-3 %

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
30323	16449 ChEBI	alanine	+	carbon source
30323	22599 ChEBI	arabinose	+	carbon source
30323	17057 ChEBI	cellobiose	+	carbon source
30323	4853 ChEBI	esculin	+	hydrolysis
30323	28260 ChEBI	galactose	+	carbon source
30323	24265 ChEBI	gluconate	+	carbon source
30323	17234 ChEBI	glucose	+	carbon source
30323	17306 ChEBI	maltose	+	carbon source
30323	29864 ChEBI	mannitol	+	carbon source
30323	37684 ChEBI	mannose	+	carbon source
30323	28053 ChEBI	melibiose	+	carbon source
30323	506227 ChEBI	N-acetylglucosamine	+	carbon source
30323	18257 ChEBI	ornithine	+	carbon source
30323	15361 ChEBI	pyruvate	+	carbon source
30323	33942 ChEBI	ribose	+	carbon source
30323	30911 ChEBI	sorbitol	+	carbon source
30323	17992 ChEBI	sucrose	+	carbon source
30323	27082 ChEBI	trehalose	+	carbon source
30323	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
30323	16136 ChEBI	hydrogen sulfide
30323	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
30323	35581 ChEBI	indole	+

Enzymes

@ref	Value	Activity	Ec
30323	cytochrome oxidase	+	1.9.3.1
30323	gelatinase	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Food production	#Aquaculture
#Host	#Fishes	#Salmonidae
#Host Body-Site	#Urogenital tract	#Kidney

Isolation

@ref	Sample type	Host species	Geographic location	Country	Country ISO 3 Code	Continent	Sampling date
17734	kidney of a diseased Atlantic salmon (Salmo salar) from a fish farm	Salmo salar	Concepción	Chile	CHL	Middle and South America
62522	Kidney,Atlantic salmon (Salmo salar)		Concepción	Chile	CHL	Middle and South America	2006

Interaction and safety

Risk assessment

@ref	Pathogenicity animal	Biosafety level	Biosafety level comment
17734	yes, in single cases	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM314852v1 assembly for Flavobacterium araucananum DSM 24704	scaffold	GCA_003148525	946678.8	2695420947	946678	69.7
66792	ASM222205v1 assembly for Flavobacterium araucananum DSM 24704	scaffold	GCA_002222055	946678.6	8114423156	946678	48.5

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17734	Flavobacterium araucananum partial 16S rRNA gene, type strain strain LM-19-FpT	FR774916	1392		946678

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Flavobacterium araucananum DSM 24704
NCBI: GCA_003148525

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.40	no
125439	motility	BacteriaNetⓘ	no	68.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	94.60	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Flavobacterium araucananum DSM 24704
NCBI: GCA_003148525.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.68	yes
125438	anaerobic	anaerobicⓘ	no	98.85	yes
125438	aerobic	aerobicⓘ	yes	83.34	yes
125438	spore-forming	spore-formingⓘ	no	85.30	yes
125438	thermophilic	thermophileⓘ	no	99.42	yes
125438	flagellated	motile2+ⓘ	no	93.00	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Investigation of the Genus Flavobacterium as a Reservoir for Fish-Pathogenic Bacterial Species: the Case of Flavobacterium collinsii.	Lee BH, Nicolas P, Saticioglu IB, Fradet B, Bernardet JF, Rigaudeau D, Rochat T, Duchaud E.	Appl Environ Microbiol	10.1128/aem.02162-22	2023
Phylogeny	Flavobacterium spartansii sp. nov., a pathogen of fishes, and emended descriptions of Flavobacterium aquidurense and Flavobacterium araucananum.	Loch TP, Faisal M	Int J Syst Evol Microbiol	10.1099/ijs.0.051433-0	2013
Phylogeny	Flavobacterium chilense sp. nov. and Flavobacterium araucananum sp. nov., isolated from farmed salmonid fish.	Kampfer P, Lodders N, Martin K, Avendano-Herrera R	Int J Syst Evol Microbiol	10.1099/ijs.0.033431-0	2011

References

#17734	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 24704
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#26664	IJSEM 1402 2012 ( DOI 10.1099/ijs.0.033431-0 , PubMed 21828008 )
#30323	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #26664
#62522	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 61031
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flavobacterium araucananum (DSM 24704, CCM 7939, CCUG 61031)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_003148525

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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