Strain identifier
BacDive ID: 5585
Type strain: 
Species: Flavobacterium araucananum
Strain Designation: LM-19-Fp
Strain history: <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; LM19-Fp <- R. Avendano-Herrera
NCBI tax ID(s): 946678 (species)
version 8.1 (current version)
General
@ref: 17734
BacDive-ID: 5585
DSM-Number: 24704
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped, animal pathogen
description: Flavobacterium araucananum LM-19-Fp is an aerobe, mesophilic, Gram-negative animal pathogen that was isolated from kidney of a diseased Atlantic salmon from a fish farm.
NCBI tax id
- NCBI tax id: 946678
- Matching level: species
strain history
- @ref: 17734
- history: <- P. Kämpfer, Justus-Liebig-Universität, Giessen, Germany; LM19-Fp <- R. Avendano-Herrera
doi: 10.13145/bacdive5585.20230509.8.1
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/bacteroidota
- domain: Bacteria
- phylum: Bacteroidota
- class: Flavobacteriia
- order: Flavobacteriales
- family: Flavobacteriaceae
- genus: Flavobacterium
- species: Flavobacterium araucananum
- full scientific name: Flavobacterium araucananum Kämpfer et al. 2012
@ref: 17734
domain: Bacteria
phylum: Bacteroidetes
class: Flavobacteriia
order: Flavobacteriales
family: Flavobacteriaceae
genus: Flavobacterium
species: Flavobacterium araucananum
full scientific name: Flavobacterium araucananum Kämpfer et al. 2012 emend. Loch and Faisal 2014
strain designation: LM-19-Fp
type strain: yes
Morphology
cell morphology
| @ref | gram stain | cell length | cell width | cell shape | motility | flagellum arrangement | confidence |
|---|---|---|---|---|---|---|---|
| 30323 | negative | 1.25 µm | 0.9 µm | rod-shaped | yes | gliding | |
| 69480 | negative | 99.998 |
colony morphology
- @ref: 62522
- incubation period: 2 days
pigmentation
- @ref: 30323
- production: yes
Culture and growth conditions
culture medium
- @ref: 17734
- name: R2A MEDIUM (DSMZ Medium 830)
- growth: yes
- link: https://mediadive.dsmz.de/medium/830
- composition: Name: R2A MEDIUM (DSMZ Medium 830) Composition: Agar 15.0 g/l Casamino acids 0.5 g/l Starch 0.5 g/l Glucose 0.5 g/l Proteose peptone 0.5 g/l Yeast extract 0.5 g/l K2HPO4 0.3 g/l Na-pyruvate 0.3 g/l MgSO4 x 7 H2O 0.05 g/l Distilled water
culture temp
| @ref | growth | type | temperature | range |
|---|---|---|---|---|
| 17734 | positive | growth | 28 | mesophilic |
| 30323 | positive | growth | 4-30 | |
| 30323 | positive | optimum | 27.5 | mesophilic |
| 62522 | positive | growth | 20 | psychrophilic |
culture pH
| @ref | ability | type | pH | PH range |
|---|---|---|---|---|
| 30323 | positive | growth | 6.5-8.5 | alkaliphile |
| 30323 | positive | optimum | 7.5 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance |
|---|---|
| 30323 | aerobe |
| 62522 | aerobe |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 30323 | no | |
| 69481 | no | 100 |
| 69480 | no | 99.998 |
halophily
- @ref: 30323
- salt: NaCl
- growth: positive
- tested relation: growth
- concentration: 0-3 %
metabolite utilization
| @ref | Chebi-ID | metabolite | utilization activity | kind of utilization tested |
|---|---|---|---|---|
| 30323 | 16449 | alanine | + | carbon source |
| 30323 | 22599 | arabinose | + | carbon source |
| 30323 | 17057 | cellobiose | + | carbon source |
| 30323 | 28260 | galactose | + | carbon source |
| 30323 | 24265 | gluconate | + | carbon source |
| 30323 | 17234 | glucose | + | carbon source |
| 30323 | 17306 | maltose | + | carbon source |
| 30323 | 29864 | mannitol | + | carbon source |
| 30323 | 37684 | mannose | + | carbon source |
| 30323 | 28053 | melibiose | + | carbon source |
| 30323 | 506227 | N-acetylglucosamine | + | carbon source |
| 30323 | 18257 | ornithine | + | carbon source |
| 30323 | 15361 | pyruvate | + | carbon source |
| 30323 | 33942 | ribose | + | carbon source |
| 30323 | 30911 | sorbitol | + | carbon source |
| 30323 | 17992 | sucrose | + | carbon source |
| 30323 | 27082 | trehalose | + | carbon source |
| 30323 | 18222 | xylose | + | carbon source |
| 30323 | 4853 | esculin | + | hydrolysis |
metabolite production
| @ref | Chebi-ID | metabolite | production |
|---|---|---|---|
| 30323 | 16136 | hydrogen sulfide | yes |
| 30323 | 35581 | indole | yes |
metabolite tests
- @ref: 30323
- Chebi-ID: 35581
- metabolite: indole
- indole test: +
enzymes
| @ref | value | activity | ec |
|---|---|---|---|
| 30323 | gelatinase | + | |
| 30323 | cytochrome oxidase | + | 1.9.3.1 |
Isolation, sampling and environmental information
isolation
| @ref | sample type | host species | geographic location | country | origin.country | continent | sampling date |
|---|---|---|---|---|---|---|---|
| 17734 | kidney of a diseased Atlantic salmon (Salmo salar) from a fish farm | Salmo salar | Concepción | Chile | CHL | Middle and South America | |
| 62522 | Kidney,Atlantic salmon (Salmo salar) | Concepción | Chile | CHL | Middle and South America | 2006 |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Engineered | #Food production | #Aquaculture |
| #Host | #Fishes | #Salmonidae |
| #Host Body-Site | #Urogenital tract | #Kidney |
Safety information
risk assessment
- @ref: 17734
- pathogenicity animal: yes, in single cases
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 17734
- description: Flavobacterium araucananum partial 16S rRNA gene, type strain strain LM-19-FpT
- accession: FR774916
- length: 1392
- database: ena
- NCBI tax ID: 946678
Genome sequences
| @ref | description | accession | assembly level | database | NCBI tax ID |
|---|---|---|---|---|---|
| 66792 | Flavobacterium araucananum DSM 24704 | GCA_003148525 | scaffold | ncbi | 946678 |
| 66792 | Flavobacterium araucananum DSM 24704 | GCA_002222055 | scaffold | ncbi | 946678 |
| 66792 | Flavobacterium araucananum strain DSM 24704 | 946678.6 | wgs | patric | 946678 |
| 66792 | Flavobacterium araucananum strain DSM 24704 | 946678.8 | wgs | patric | 946678 |
| 66792 | Flavobacterium araucananum DSM 24704 | 2695420947 | draft | img | 946678 |
Genome-based predictions
predictions
| trait | prediction | confidence | training_data |
|---|---|---|---|
| spore-forming | no | 100 | no |
| flagellated | no | 93.931 | yes |
| gram-positive | no | 98.301 | yes |
| anaerobic | no | 99.721 | yes |
| halophile | no | 96.251 | no |
| spore-forming | no | 92.376 | no |
| glucose-util | yes | 89.344 | no |
| aerobic | yes | 89.468 | yes |
| thermophile | no | 99.745 | yes |
| motile | no | 85.746 | no |
| glucose-ferment | no | 86.876 | no |
External links
@ref: 17734
culture collection no.: DSM 24704, CCM 7939, CCUG 61031, LMG 26359
straininfo link
- @ref: 75067
- straininfo: 376917
literature
| topic | Pubmed-ID | title | authors | journal | DOI | year | mesh | topic2 |
|---|---|---|---|---|---|---|---|---|
| Phylogeny | 21828008 | Flavobacterium chilense sp. nov. and Flavobacterium araucananum sp. nov., isolated from farmed salmonid fish. | Kampfer P, Lodders N, Martin K, Avendano-Herrera R | Int J Syst Evol Microbiol | 10.1099/ijs.0.033431-0 | 2011 | Animals, Chile, DNA, Bacterial/genetics, Fatty Acids/metabolism, Fish Diseases/*microbiology, Flavobacteriaceae Infections/microbiology/*veterinary, Flavobacterium/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Oncorhynchus mykiss/*microbiology, Phylogeny, RNA, Ribosomal, 16S/genetics | Metabolism |
| Phylogeny | 24096350 | Flavobacterium spartansii sp. nov., a pathogen of fishes, and emended descriptions of Flavobacterium aquidurense and Flavobacterium araucananum. | Loch TP, Faisal M | Int J Syst Evol Microbiol | 10.1099/ijs.0.051433-0 | 2013 | Animals, Aquaculture, Bacterial Typing Techniques, Base Composition, Bayes Theorem, DNA, Bacterial/genetics, Fatty Acids/chemistry, Fish Diseases/microbiology, Flavobacterium/*classification/genetics/isolation & purification, Gills/microbiology, Kidney/microbiology, Michigan, Molecular Sequence Data, Nucleic Acid Hybridization, *Phylogeny, RNA, Ribosomal, 16S/genetics, Salmon/*microbiology, Sequence Analysis, DNA | Genetics |
Reference
| @id | authors | catalogue | doi/url | title | ID_cross_reference | pubmed |
|---|---|---|---|---|---|---|
| 17734 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 24704) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-24704 | |||
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |||
| 30323 | Barberan A, Caceres Velazquez H, Jones S, Fierer N. | 10.1128/mSphere.00237-17 | Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information | 26664 | 28776041 | |
| 62522 | Curators of the CCUG | Culture Collection University of Gothenburg (CCUG) (CCUG 61031) | https://www.ccug.se/strain?id=61031 | |||
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69480 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |||
| 69481 | Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch | 10.21203/rs.3.rs-2527258/v1 | Predictions based on the model GenomeNet Sporulation v. 1 | |||
| 75067 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID376917.1 | StrainInfo: A central database for resolving microbial strain identifiers |