Name: Flavobacterium anhuiense D3
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5570

Type strain:

Species: Flavobacterium anhuiense

Strain Designation: D3

Culture col. no.: DSM 22555, CGMCC 1.6859, KCTC 22128, JCM 14864, CIP 109938

Strain history: CIP <- 2009, KCTC

NCBI tax ID(s): 459526 (species)

SI-ID 397181

DSM 22555

Special Collections

Section

Flavobacterium anhuiense D3 is an aerobe, Gram-negative, motile bacterium that was isolated from field-soil.

Gram-negative
motile
rod-shaped
aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium anhuiense**
	Full Scientific Name (LPSN)	Flavobacterium anhuiense Liu et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32470]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #116390]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %96.727

[Ref.: #32470]	Cell length	1.75 µm

[Ref.: #32470]	Cell width	0.3 µm

[Ref.: #32470]	Cell shape	rod-shaped
[Ref.: #116390]	Cell shape	rod-shaped
[Ref.: #67771]	Cell shape	rod-shaped

[Ref.: #32470]	Motility	yes
[Ref.: #116390]	Motility	no
[Ref.: #67771]	Motility	yes
[Ref.: #69480]	Motility	no Confidence in %91.5

[Ref.: #32470]	Flagellum arrangement	gliding
[Ref.: #67771]	Flagellum arrangement	gliding

[Ref.: #32470]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16396]

Culture medium

TYB MEDIUM (DSMZ Medium 1247)

[Ref.: #16396]

Culture medium growth

[Ref.: #16396]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16396]

Culture medium composition

expand / minimize

[Ref.: #116390]

Culture medium

CIP Medium 72

[Ref.: #116390]

Culture medium growth

[Ref.: #116390]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16396]	growth	25 °C
[Ref.: #32470]	growth	05-37 °C
[Ref.: #32470]	optimum	27.5 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	25-30 °C

	pH	Kind of pH		pH
[Ref.: #32470]			optimum	7
[Ref.: #32470]			growth	04-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32470]	Oxygen tolerance	aerobe
[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #116390]	Oxygen tolerance	obligate aerobe

[Ref.: #32470]	Ability of spore formation	no
[Ref.: #67771]	Ability of spore formation	no

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32470]		NaCl		growth	0-2	%
[Ref.: #32470]		NaCl		optimum	0.5	%

[Ref.: #67770]	Observation	quinones: MK-6
[Ref.: #67771]	Observation	quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #32470]	arabinose ChEBI	+	carbon source
[Ref.: #32470]	cellobiose ChEBI	+	carbon source
[Ref.: #32470]	dextrin ChEBI	+	carbon source
[Ref.: #32470]	fructose ChEBI	+	carbon source
[Ref.: #32470]	galactose ChEBI	+	carbon source
[Ref.: #32470]	glucose ChEBI	+	carbon source
[Ref.: #32470]	lactose ChEBI	+	carbon source
[Ref.: #32470]	maltose ChEBI	+	carbon source
[Ref.: #32470]	melibiose ChEBI	+	carbon source
[Ref.: #116390]	nitrate ChEBI	-	reduction
[Ref.: #116390]	nitrite ChEBI	-	reduction
[Ref.: #32470]	raffinose ChEBI	+	carbon source
[Ref.: #32470]	salicin ChEBI	+	carbon source
[Ref.: #32470]	sucrose ChEBI	+	carbon source
[Ref.: #32470]	xylitol ChEBI	+	carbon source
[Ref.: #32470]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #116390]		indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #32470]	acid phosphatase	+	3.1.3.2
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #32470]	alkaline phosphatase	+	3.1.3.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #32470]	catalase	+	1.11.1.6
[Ref.: #116390]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	-		* from API zym
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #116390]	oxidase	+
[Ref.: #68382]	trypsin	-	3.4.21.4	* from API zym
[Ref.: #116390]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #116390]	12234	-	+	+	-	-	+	+	+	-	-	+	+	-	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16396]	Sample type/isolated from	field-soil
[Ref.: #16396]	Geographic location (country and/or sea, region)	Anhui Province
[Ref.: #16396]	Country	China
[Ref.: #16396]	Country ISO 3 Code	CHN
[Ref.: #16396]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Soil from Anhui Province
[Ref.: #67770]	Country	China
[Ref.: #67770]	Country ISO 3 Code	CHN
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From soil
[Ref.: #67771]	Geographic location (country and/or sea, region)	Anhui province
[Ref.: #67771]	Country	China
[Ref.: #67771]	Country ISO 3 Code	CHN
[Ref.: #67771]	Continent	Asia

[Ref.: #116390]	Sample type/isolated from	Environment, Soil, field
[Ref.: #116390]	Geographic location (country and/or sea, region)	Anhui
[Ref.: #116390]	Country	China
[Ref.: #116390]	Country ISO 3 Code	CHN
[Ref.: #116390]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EU046269 (>99% sequence identity) for Flavobacterium from Microbeatlas

Aquatic Samples	213
Soil Samples	350
Animal Samples	143
Plant Samples	74
Total Samples	780

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16396]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #116390]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16396]	Flavobacterium anhuiense strain D3 16S ribosomal RNA gene, partial sequence	EU046269	1398	GenBank ENA	459526 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Flavobacterium anhuiense CGMCC 1.6859	GCA_900101855	scaffold	GenBank ENA	459526 tax ID	*
[Ref.: #66792]	Flavobacterium anhuiense strain CGMCC 1.6859	459526.10	wgs	PATRIC	459526 tax ID	*
[Ref.: #66792]	Flavobacterium anhuiense CGMCC 1.6859	2596583647	draft	JGI IMG/M	459526 tax ID	*

[Ref.: #16396]	GC-content	31.4 mol%
[Ref.: #67770]	GC-content	31.4 mol%	thermal denaturation, midpoint method (Tm)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium anhuiense CGMCC 1.6859 NCBI: GCA_900101855.1
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	96.727	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	98.874	yes
[Ref.: #69480]	aerobic	aerobicⓘ	yes	86.383	yes
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	84.089	no
[Ref.: #69480]	thermophilic	thermophileⓘ	no	97.924	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	91.5	yes

Availability in culture collections External links

[Ref.: #16396]

Culture collection no.

DSM 22555, CGMCC 1.6859, KCTC 22128, JCM 14864, CIP 109938

[Ref.: #75053]

SI-ID 397181

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium phragmitis sp. nov., an endophyte of reed (Phragmites australis).	Liu M, Li YH, Liu Y, Zhu JN, Liu QF, Liu Y, Gu JG, Zhang XX, Li CL	Int J Syst Evol Microbiol	10.1099/ijs.0.027417-0	2010	*
Phylogeny	Flavobacterium anhuiense sp. nov., isolated from field soil.	Liu H, Liu R, Yang SY, Gao WK, Zhang CX, Zhang KY, Lai R	Int J Syst Evol Microbiol	10.1099/ijs.0.65536-0	2008	*

References

#16396

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22555

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32470

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28691 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#75053

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID397181.1 )

#116390 Collection of Institut Pasteur ; Curators of the CIP; CIP 109938

#28691

IJSEM 756 2008 ( DOI 10.1099/ijs.0.65536-0 , PubMed 18398165 )

* These data were automatically processed and therefore are not curated

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Flavobacterium anhuiense CGMCC 1.6859

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