Flavobacterium anhuiense (DSM 22555, CGMCC 1.6859, KCTC 22128)

Name: Flavobacterium anhuiense (DSM 22555, CGMCC 1.6859, KCTC 22128)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5570

Type strain

Strain Designation D3

Culture col. no. DSM 22555 CGMCC 1.6859 KCTC 22128 D3 JCM 14864 1 more

NCBI tax ID(s) 459526

Special Collections DSMZ JCM KCTC CIP Literature strains

Links

Flavobacterium anhuiense D3 is an aerobe, mesophilic, Gram-negative prokaryote that was isolated from field-soil.

Gram-negative motile rod-shaped aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 397181

KCTC 22128,JCM 14864,DSM 22555

@ref 20215

Last LPSN update 2025-12-16 09:48:06

Domain Pseudomonadati

Phylum Bacteroidota

Class Flavobacteriia

Order Flavobacteriales

Family Flavobacteriaceae

Genus Flavobacterium

Species Flavobacterium anhuiense

Full scientific name Flavobacterium anhuiense Liu et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Flagellum arrangement	Confidence
32470	negative	1.75 µm	0.3 µm	rod-shaped	gliding
67771				rod-shaped	gliding
67771	negative
116390	negative			rod-shaped
125438						91.5
125438	negative					96.727
125439	negative					99.9

Pigmentation

32470

Productionyes

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
16396	TYB MEDIUM (DSMZ Medium 1247)		Medium recipe at MediaDive	Name: TYB (DSMZ Medium 1247) Composition: Agar 15.0 g/l Tryptone 6.0 g/l Yeast extract 3.0 g/l NaCl 3.0 g/l Beef extract 2.0 g/l FeCl3 0.1 g/l Distilled water
116390	CIP Medium 72		Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
16396	positive	growth	25	mesophilic
32470	positive	growth	05-37
32470	positive	optimum	27.5	mesophilic
67770	positive	growth	30	mesophilic
67771	positive	growth	25-30	mesophilic

Culture pH

@ref	Ability	Type	PH	PH range
32470	positive	optimum	7
32470	positive	growth	04-10	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
32470	aerobe
67771	aerobe
116390	obligate aerobe
125439	obligate aerobe	96.2

Spore formation

@ref	Spore formation	Confidence
32470
67771
125439		99

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32470	NaCl	positive	growth	0-2 %
32470	NaCl	positive	optimum	0.5 %

Observation

@ref	Observation
67770	quinones: MK-6
67771	quinones: MK-6

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32470	22599 ChEBI	arabinose	+	carbon source
32470	17057 ChEBI	cellobiose	+	carbon source
32470	23652 ChEBI	dextrin	+	carbon source
32470	28757 ChEBI	fructose	+	carbon source
32470	28260 ChEBI	galactose	+	carbon source
32470	17234 ChEBI	glucose	+	carbon source
32470	17716 ChEBI	lactose	+	carbon source
32470	17306 ChEBI	maltose	+	carbon source
32470	28053 ChEBI	melibiose	+	carbon source
116390	17632 ChEBI	nitrate	-	reduction
116390	16301 ChEBI	nitrite	-	reduction
32470	16634 ChEBI	raffinose	+	carbon source
32470	17814 ChEBI	salicin	+	carbon source
32470	17992 ChEBI	sucrose	+	carbon source
32470	17151 ChEBI	xylitol	+	carbon source
32470	18222 ChEBI	xylose	+	carbon source

Metabolite production

@ref	Chebi-ID	Metabolite	Production
116390	35581 ChEBI	indole

Enzymes

@ref	Value	Activity	Ec
32470	acid phosphatase	+	3.1.3.2
68382	acid phosphatase	+	3.1.3.2	from API zym
32470	alkaline phosphatase	+	3.1.3.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68382	beta-galactosidase	+	3.2.1.23	from API zym
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
32470	catalase	+	1.11.1.6
116390	catalase	+	1.11.1.6
68382	cystine arylamidase	+	3.4.11.3	from API zym
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	-		from API zym
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
116390	oxidase	+
68382	trypsin	-	3.4.21.4	from API zym
116390	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
116390	-	+	+	-	-	+	+	+	-	-	+	+	-	+	-	+	+	+	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Engineered	#Agriculture	#Field
#Environmental	#Terrestrial	#Soil

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
16396	field-soil	Anhui Province	China	CHN	Asia
67770	Soil from Anhui Province		China	CHN	Asia
67771	From soil	Anhui province	China	CHN	Asia
116390	Environment, Soil, field	Anhui	China	CHN	Asia

Taxonmaps

69479

Global distribution of 16S sequence EU046269 (>99% sequence identity) for Flavobacterium from Microbeatlas

Aquatic Samples	213
Soil Samples	350
Animal Samples	143
Plant Samples	74
Total Samples	780

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
16396	1	Risk group (German classification) According to TRBA 466
116390	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2596583647 annotated assembly for Flavobacterium anhuiense CGMCC 1.6859	scaffold	GCA_900101855	459526.10	2596583647	459526	73.19

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
16396	Flavobacterium anhuiense strain D3 16S ribosomal RNA gene, partial sequence	EU046269	1398		459526

GC content

@ref	GC-content (mol%)	Method
16396	31.4
67770	31.4	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Flavobacterium anhuiense CGMCC 1.6859
NCBI: GCA_900101855

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	99.00	no
125439	motility	BacteriaNetⓘ	no	69.60	no
125439	gram_stain	BacteriaNetⓘ	negative	99.90	no
125439	oxygen_tolerance	BacteriaNetⓘ	obligate aerobe	96.20	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Flavobacterium anhuiense CGMCC 1.6859
NCBI: GCA_900101855.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	96.73	no
125438	anaerobic	anaerobicⓘ	no	98.87	yes
125438	aerobic	aerobicⓘ	yes	86.38	yes
125438	spore-forming	spore-formingⓘ	no	84.09	no
125438	thermophilic	thermophileⓘ	no	97.92	no
125438	flagellated	motile2+ⓘ	no	91.50	yes

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Complete genome sequence data of Flavobacterium anhuiense strain GSE09, a volatile-producing biocontrol bacterium isolated from cucumber (Cucumis sativus) root.	Jeong JJ, Sajidah S, Oh JY, Sang MK, Kim KS, Kim KD.	Data Brief	10.1016/j.dib.2019.104270	2019
Genetics	Integrating metagenomics and culturomics to uncover the soil bacterial community in Asparagus cochinchinensis cultivation.	Yu J, Yang S, Zhang X, Liu X, Tang X, Wang L, Chen J, Luo H, Liu C, Song C.	Front Microbiol	10.3389/fmicb.2024.1467864	2024
Genetics	Comparative genomic analysis of Chryseobacterium species: deep insights into plant-growth-promoting and halotolerant capacities.	Jung H, Lee D, Lee S, Kong HJ, Park J, Seo YS.	Microb Genom	10.1099/mgen.0.001108	2023
	Isolation and Characterization of Potassium-Solubilizing Rhizobacteria (KSR) Promoting Cotton Growth in Saline-Sodic Regions.	Zhao Y, Liang H, Zhang J, Chen Y, Dhital YP, Zhao T, Wang Z.	Microorganisms	10.3390/microorganisms12071474	2024
	Longitudinal analysis of exposure to a low concentration of oxytetracycline on the zebrafish gut microbiome.	Kayani MUR, Yu K, Qiu Y, Yu X, Chen L, Huang L.	Front Microbiol	10.3389/fmicb.2022.985065	2022
Phylogeny	Antibacterial activity of aquatic gliding bacteria.	Sangnoi Y, Anantapong T, Kanjana-Opas A.	Springerplus	10.1186/s40064-016-1747-y	2016
	Diversity Shifts in the Root Microbiome of Cucumber Under Different Plant Cultivation Substrates.	Zhou F, Wu X, Gao Y, Fan S, Zhou H, Zhang X.	Front Microbiol	10.3389/fmicb.2022.878409	2022
	In situ imaging of bacterial outer membrane projections and associated protein complexes using electron cryo-tomography.	Kaplan M, Chreifi G, Metskas LA, Liedtke J, Wood CR, Oikonomou CM, Nicolas WJ, Subramanian P, Zacharoff LA, Wang Y, Chang YW, Beeby M, Dobro MJ, Zhu Y, McBride MJ, Briegel A, Shaffer CL, Jensen GJ.	Elife	10.7554/elife.73099	2021
Phylogeny	Characterizing rhizosphere microbiota of peanut (Arachis hypogaea L.) from pre-sowing to post-harvest of crop under field conditions.	Hinsu AT, Panchal KJ, Pandit RJ, Koringa PG, Kothari RK.	Sci Rep	10.1038/s41598-021-97071-3	2021
	Biological Control of Oomycete Soilborne Diseases Caused by Phytophthora capsici, Phytophthora infestans, and Phytophthora nicotianae in Solanaceous Crops.	Volynchikova E, Kim KD.	Mycobiology	10.1080/12298093.2022.2136333	2022
	Flavobacterium tagetis sp. nov., a novel urea-hydrolysing bacterium isolated from the roots of Tagetes patula.	Chhetri G, Kim I, Kang M, Kim J, So Y, Seo T.	Int J Syst Evol Microbiol	10.1099/ijsem.0.004984	2021
Phylogeny	Flavobacterium zhairuonensis sp. nov., a gliding bacterium isolated from marine sediment of the East China Sea.	Debnath SC, Miyah AMA, Chen C, Sheng H, Xu XW, Wu YH, Zheng DQ, Xu JZ, Di YN, Wang PM, Shen L.	J Microbiol	10.1007/s12275-019-9194-4	2019
Phylogeny	Flavobacterium tistrianum sp. nov., a gliding bacterium isolated from soil.	Suwannachart C, Rueangyotchanthana K, Srichuay S, Pheng S, Fungsin B, Phoonsiri C, Kim SG.	Int J Syst Evol Microbiol	10.1099/ijsem.0.001016	2016
Phylogeny	Flavobacterium nitrogenifigens sp. nov., isolated from switchgrass (Panicum virgatum).	Kampfer P, Busse HJ, McInroy JA, Xu J, Glaeser SP.	Int J Syst Evol Microbiol	10.1099/ijs.0.000330	2015
Phylogeny	Flavobacterium phragmitis sp. nov., an endophyte of reed (Phragmites australis).	Liu M, Li YH, Liu Y, Zhu JN, Liu QF, Liu Y, Gu JG, Zhang XX, Li CL	Int J Syst Evol Microbiol	10.1099/ijs.0.027417-0	2010
Phylogeny	Flavobacterium anhuiense sp. nov., isolated from field soil.	Liu H, Liu R, Yang SY, Gao WK, Zhang CX, Zhang KY, Lai R	Int J Syst Evol Microbiol	10.1099/ijs.0.65536-0	2008

References

#16396	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22555
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28691	IJSEM 756 2008 ( DOI 10.1099/ijs.0.65536-0 , PubMed 18398165 )
#32470	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28691
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#116390	Collection of Institut Pasteur ; Curators of the CIP; CIP 109938
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Flavobacterium anhuiense (DSM 22555, CGMCC 1.6859, KCTC 22128)

Name and taxonomic classification

Morphology

Cell morphology

Pigmentation

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Metabolite production

Enzymes

API zym

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900101855

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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