Strain identifier

BacDive ID: 5570

Type strain: Yes

Species: Flavobacterium anhuiense

Strain Designation: D3

Strain history: CIP <- 2009, KCTC

NCBI tax ID(s): 459526 (species)

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General

@ref: 16396

BacDive-ID: 5570

DSM-Number: 22555

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative, motile, rod-shaped

description: Flavobacterium anhuiense D3 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from field-soil.

NCBI tax id

  • NCBI tax id: 459526
  • Matching level: species

strain history

@refhistory
16396<- KCTC <- H. Liu, Nanjing Agric. Univ., China
67770H. Liu D3.
67771<- H Liu, Nanjing Agri. Univ., China
116390CIP <- 2009, KCTC

doi: 10.13145/bacdive5570.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/bacteroidota
  • domain: Bacteria
  • phylum: Bacteroidota
  • class: Flavobacteriia
  • order: Flavobacteriales
  • family: Flavobacteriaceae
  • genus: Flavobacterium
  • species: Flavobacterium anhuiense
  • full scientific name: Flavobacterium anhuiense Liu et al. 2008

@ref: 16396

domain: Bacteria

phylum: Bacteroidetes

class: Flavobacteriia

order: Flavobacteriales

family: Flavobacteriaceae

genus: Flavobacterium

species: Flavobacterium anhuiense

full scientific name: Flavobacterium anhuiense Liu et al. 2008

strain designation: D3

type strain: yes

Morphology

cell morphology

@refgram staincell lengthcell widthcell shapemotilityflagellum arrangement
32470negative1.75 µm0.3 µmrod-shapedyesgliding
67771rod-shapedyesgliding
67771negative
116390negativerod-shapedno

pigmentation

  • @ref: 32470
  • production: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16396TYB MEDIUM (DSMZ Medium 1247)yeshttps://mediadive.dsmz.de/medium/1247Name: TYB (DSMZ Medium 1247) Composition: Agar 15.0 g/l Tryptone 6.0 g/l Yeast extract 3.0 g/l NaCl 3.0 g/l Beef extract 2.0 g/l FeCl3 0.1 g/l Distilled water
116390CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
16396positivegrowth25mesophilic
32470positivegrowth05-37
32470positiveoptimum27.5mesophilic
67770positivegrowth30mesophilic
67771positivegrowth25-30mesophilic

culture pH

@refabilitytypepHPH range
32470positivegrowth04-10alkaliphile
32470positiveoptimum7

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
32470aerobe
67771aerobe
116390obligate aerobe

spore formation

@refspore formation
32470no
67771no

halophily

@refsaltgrowthtested relationconcentration
32470NaClpositivegrowth0-2 %
32470NaClpositiveoptimum0.5 %

observation

@refobservation
67770quinones: MK-6
67771quinones: MK-6

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3247022599arabinose+carbon source
3247017057cellobiose+carbon source
3247023652dextrin+carbon source
3247028757fructose+carbon source
3247028260galactose+carbon source
3247017234glucose+carbon source
3247017716lactose+carbon source
3247017306maltose+carbon source
3247028053melibiose+carbon source
3247016634raffinose+carbon source
3247017814salicin+carbon source
3247017992sucrose+carbon source
3247017151xylitol+carbon source
3247018222xylose+carbon source
11639017632nitrate-reduction
11639016301nitrite-reduction

metabolite production

  • @ref: 116390
  • Chebi-ID: 35581
  • metabolite: indole
  • production: no

enzymes

@refvalueactivityec
32470acid phosphatase+3.1.3.2
32470alkaline phosphatase+3.1.3.1
32470catalase+1.11.1.6
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase+3.2.1.52
68382beta-glucosidase+3.2.1.21
68382alpha-glucosidase+3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase+3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase+3.4.11.3
68382valine arylamidase+
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
116390oxidase+
116390catalase+1.11.1.6
116390urease-3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
116390-++--+++--++-+-+++--

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
16396field-soilAnhui ProvinceChinaCHNAsia
67770Soil from Anhui ProvinceChinaCHNAsia
67771From soilAnhui provinceChinaCHNAsia
116390Environment, Soil, fieldAnhuiChinaCHNAsia

isolation source categories

Cat1Cat2Cat3
#Engineered#Agriculture#Field
#Environmental#Terrestrial#Soil

taxonmaps

  • @ref: 69479
  • File name: preview.99_301.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_66;96_207;97_226;98_255;99_301&stattab=map
  • Last taxonomy: Flavobacterium
  • 16S sequence: EU046269
  • Sequence Identity:
  • Total samples: 780
  • soil counts: 350
  • aquatic counts: 213
  • animal counts: 143
  • plant counts: 74

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
163961Risk group (German classification)
1163901Risk group (French classification)

Sequence information

16S sequences

  • @ref: 16396
  • description: Flavobacterium anhuiense strain D3 16S ribosomal RNA gene, partial sequence
  • accession: EU046269
  • length: 1398
  • database: ena
  • NCBI tax ID: 459526

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Flavobacterium anhuiense CGMCC 1.6859GCA_900101855scaffoldncbi459526
66792Flavobacterium anhuiense strain CGMCC 1.6859459526.10wgspatric459526
66792Flavobacterium anhuiense CGMCC 1.68592596583647draftimg459526

GC content

@refGC-contentmethod
1639631.4
6777031.4thermal denaturation, midpoint method (Tm)

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
motileno76.762no
flagellatedno94.063yes
gram-positiveno98.297yes
anaerobicno99.693yes
aerobicyes90.481yes
halophileno96.681no
spore-formingno92.149no
glucose-fermentno86.644no
thermophileno99.197yes
glucose-utilyes92.596yes

External links

@ref: 16396

culture collection no.: DSM 22555, CGMCC 1.6859, KCTC 22128, JCM 14864, CIP 109938

straininfo link

  • @ref: 75053
  • straininfo: 397181

literature

topicPubmed-IDtitleauthorsjournalDOIyearmeshtopic2
Phylogeny18398165Flavobacterium anhuiense sp. nov., isolated from field soil.Liu H, Liu R, Yang SY, Gao WK, Zhang CX, Zhang KY, Lai RInt J Syst Evol Microbiol10.1099/ijs.0.65536-02008Base Composition, Base Sequence, China, DNA Primers/genetics, DNA, Bacterial/chemistry/genetics, Fatty Acids/analysis, Flavobacterium/chemistry/classification/*genetics/*isolation & purification, Molecular Sequence Data, Phylogeny, RNA, Bacterial/genetics, RNA, Ribosomal, 16S/genetics, Soil Microbiology, Species Specificity, Terminology as Topic, Terpenes/analysisGenetics
Phylogeny21186290Flavobacterium phragmitis sp. nov., an endophyte of reed (Phragmites australis).Liu M, Li YH, Liu Y, Zhu JN, Liu QF, Liu Y, Gu JG, Zhang XX, Li CLInt J Syst Evol Microbiol10.1099/ijs.0.027417-02010Base Composition, China, DNA, Bacterial/genetics, Endophytes/*classification/genetics/*isolation & purification/metabolism, Fatty Acids/metabolism, Flavobacterium/*classification/genetics/*isolation & purification/metabolism, Molecular Sequence Data, Phylogeny, Plant Roots/microbiology, Poaceae/*microbiology, RNA, Ribosomal, 16S/geneticsMetabolism

Reference

@idauthorscataloguedoi/urltitleID_cross_referencepubmed
16396Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 22555)https://www.dsmz.de/collection/catalogue/details/culture/DSM-22555
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
32470Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information2869128776041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
75053Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID397181.1StrainInfo: A central database for resolving microbial strain identifiers
116390Curators of the CIPCollection of Institut Pasteur (CIP 109938)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109938