Name: Flavobacterium saccharophilum 024
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5516

Type strain:

Species: Flavobacterium saccharophilum

Strain Designation: 024

Culture col. no.: DSM 1811, IAM 14309, NCMB 2072, JCM 8520, ACAM 581, ATCC 49530, CIP 104743, IFO 15944, LMG 8384, NBRC 15944, NCIMB 2072

Strain history: CIP <- 1996, J.F. Bernardet, INRA, Jouy en Josas, France <- NCIMB <- M.O. Moss

NCBI tax ID(s): 29534 (species)

SI-ID 14015

LMG 8384, ATCC 49530, DSM 1811, JCM 8520, NCIMB 2072, CIP 104743, IAM 14309, NCMB 2072, IFO 15944, NCIB 2072, NBRC 15944

Section

Flavobacterium saccharophilum 024 is an aerobe, mesophilic, Gram-negative bacterium that forms circular colonies and was isolated from silt-water interface.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium saccharophilum**
	Full Scientific Name (LPSN)	Flavobacterium saccharophilum (Reichenbach 1989 ex Agbo and Moss 1979) Bernardet et al. 1996

Synonym

Cytophaga saccharophila

Information on morphological and physiological properties Morphology

[Ref.: #43349]	Gram stain	negative
[Ref.: #122339]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.989

[Ref.: #43349]	Cell length	2.5-6 µm

[Ref.: #43349]	Cell width	0.5-0.7 µm

[Ref.: #43349]	Cell shape	rod-shaped
[Ref.: #122339]	Cell shape	rod-shaped

[Ref.: #43349]	Motility	yes
[Ref.: #122339]	Motility	no

[Ref.: #43349]	Flagellum arrangement	gliding

[Ref.: #43349]	Colony color	yellow
[Ref.: #43349]	Colony shape	circular

[Ref.: #43349]	Pigment production	yes
[Ref.: #43349]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #663]

Culture medium

CY-AGAR (DSMZ Medium 67)

[Ref.: #663]

Culture medium growth

[Ref.: #663]

Culture medium link

Medium recipe at MediaDive

[Ref.: #663]

Culture medium composition

expand / minimize

[Ref.: #39085]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #39085]

Culture medium growth

[Ref.: #39085]

Culture medium composition

expand / minimize

[Ref.: #43349]

Culture medium

Nutrient agar (NA)

[Ref.: #43349]

Culture medium growth

[Ref.: #43349]

Culture medium

Tryptic Soy Agar (TSA)

[Ref.: #43349]

Culture medium growth

[Ref.: #663]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #663]

Culture medium growth

[Ref.: #663]

Culture medium link

Medium recipe at MediaDive

[Ref.: #663]

Culture medium composition

expand / minimize

[Ref.: #122339]

Culture medium

CIP Medium 3

[Ref.: #122339]

Culture medium growth

[Ref.: #122339]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #122339]

Culture medium

CIP Medium 72

[Ref.: #122339]

Culture medium growth

[Ref.: #122339]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #43349]

Culture medium

Marine agar (MA)

[Ref.: #43349]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #663]		growth	25 °C
[Ref.: #663]		growth	28 °C
[Ref.: #39085]		growth	22 °C
[Ref.: #43349]		optimum	25 °C
[Ref.: #43349]		growth	4-30 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #122339]		growth	10-30 °C
[Ref.: #122339]	no	growth	37 °C
[Ref.: #122339]	no	growth	41 °C

[Ref.: #663]	Temperature range	mesophilic
[Ref.: #39085]	Temperature range	psychrophilic
[Ref.: #43349]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #122339]	Temperature range	mesophilic
[Ref.: #122339]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43349]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

	Salt	Tested relation		Salt conc.
[Ref.: #43349]	NaCl		growth	0-2	%(w/v)
[Ref.: #122339]	NaCl		growth	0-2	%
[Ref.: #122339]	NaCl	no	growth	4	%
[Ref.: #122339]	NaCl	no	growth	6	%
[Ref.: #122339]	NaCl	no	growth	8	%
[Ref.: #122339]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #43349]	agar ChEBI	+	carbon source
[Ref.: #43349]	agar ChEBI	+	energy source
[Ref.: #43349]	agar ChEBI	+	degradation
[Ref.: #43349]	agarose ChEBI	+	carbon source
[Ref.: #43349]	agarose ChEBI	+	energy source
[Ref.: #68371]	amygdalin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43349]	arabinogalactan ChEBI	+	carbon source
[Ref.: #43349]	arabinogalactan ChEBI	+	energy source
[Ref.: #43349]	arabinose ChEBI	+	carbon source
[Ref.: #43349]	arabinose ChEBI	+	energy source
[Ref.: #68371]	arbutin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43349]	carboxymethylcellulose ChEBI	+	degradation
[Ref.: #43349]	carrageenan ChEBI	+	carbon source
[Ref.: #43349]	carrageenan ChEBI	+	energy source
[Ref.: #43349]	casein	+	degradation
[Ref.: #43349]	cellobiose ChEBI	+	carbon source
[Ref.: #43349]	cellobiose ChEBI	+	energy source
[Ref.: #68371]	cellobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43349]	chitin ChEBI	-	degradation
[Ref.: #68371]	D-arabinose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fructose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-galactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-glucose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-lyxose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-mannose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-ribose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-sorbitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-tagatose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	D-xylose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43349]	dna ChEBI	-	degradation
[Ref.: #68371]	erythritol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43349]	esculin ChEBI	+	degradation
[Ref.: #122339]	esculin ChEBI	+	hydrolysis
[Ref.: #68371]	esculin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43349]	fructose ChEBI	+	carbon source
[Ref.: #43349]	fructose ChEBI	+	energy source
[Ref.: #68371]	galactitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43349]	galactose ChEBI	+	carbon source
[Ref.: #43349]	galactose ChEBI	+	energy source
[Ref.: #43349]	gelatin ChEBI	+	degradation
[Ref.: #68371]	gentiobiose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	gluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43349]	glucose ChEBI	+	carbon source
[Ref.: #43349]	glucose ChEBI	+	energy source
[Ref.: #43349]	glucose ChEBI	+	assimilation
[Ref.: #68371]	glycerol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	glycogen ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	inulin ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-arabitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-fucose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-rhamnose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-sorbose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	L-xylose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43349]	lactose ChEBI	+	carbon source
[Ref.: #43349]	lactose ChEBI	+	energy source
[Ref.: #68371]	lactose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43349]	maltose ChEBI	+	carbon source
[Ref.: #43349]	maltose ChEBI	+	energy source
[Ref.: #68371]	maltose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43349]	mannose ChEBI	+	carbon source
[Ref.: #43349]	mannose ChEBI	+	energy source
[Ref.: #68371]	melezitose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43349]	melibiose ChEBI	+	carbon source
[Ref.: #43349]	melibiose ChEBI	+	energy source
[Ref.: #68371]	melibiose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-glucopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl alpha-D-mannoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	methyl beta-D-xylopyranoside ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	myo-inositol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	N-acetylglucosamine ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43349]	nitrate ChEBI	+	reduction
[Ref.: #122339]	nitrate ChEBI	+	reduction
[Ref.: #122339]	nitrite ChEBI	-	reduction
[Ref.: #43349]	pectin ChEBI	+	carbon source
[Ref.: #43349]	pectin ChEBI	+	energy source
[Ref.: #43349]	pectin ChEBI	+	degradation
[Ref.: #68371]	Potassium 2-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43349]	raffinose ChEBI	+	carbon source
[Ref.: #43349]	raffinose ChEBI	+	energy source
[Ref.: #68371]	raffinose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43349]	rhamnose ChEBI	+	carbon source
[Ref.: #43349]	rhamnose ChEBI	+	energy source
[Ref.: #68371]	ribitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	salicin ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #122339]	sodium thiosulfate ChEBI	+	builds gas from
[Ref.: #43349]	starch ChEBI	+	carbon source
[Ref.: #43349]	starch ChEBI	+	energy source
[Ref.: #43349]	starch ChEBI	+	degradation
[Ref.: #68371]	starch ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43349]	sucrose ChEBI	+	carbon source
[Ref.: #43349]	sucrose ChEBI	+	energy source
[Ref.: #68371]	sucrose ChEBI	+	builds acid from	* from API 50CH acid
[Ref.: #43349]	trehalose ChEBI	+	carbon source
[Ref.: #43349]	trehalose ChEBI	+	energy source
[Ref.: #68371]	trehalose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #68371]	turanose ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43349]	tween 20 ChEBI	+	degradation
[Ref.: #43349]	tween 40 ChEBI	+	degradation
[Ref.: #43349]	tween 60 ChEBI	+	degradation
[Ref.: #43349]	tween 80 ChEBI	+	degradation
[Ref.: #43349]	tyrosine ChEBI	+	degradation
[Ref.: #43349]	urea ChEBI	-	degradation
[Ref.: #68371]	xylitol ChEBI	-	builds acid from	* from API 50CH acid
[Ref.: #43349]	xylose ChEBI	+	carbon source
[Ref.: #43349]	xylose ChEBI	+	energy source
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #122339]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	yes	no

	Metabolite	Production
[Ref.: #43349]	hydrogen sulfide ChEBI	yes
[Ref.: #43349]	indole ChEBI	no
[Ref.: #122339]	indole ChEBI	no

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #122339]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-chymotrypsin	-	3.4.21.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	+	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #68382]	alpha-mannosidase	-	3.2.1.24	* from API zym
[Ref.: #43349]	beta-galactosidase	+	3.2.1.23
[Ref.: #122339]	beta-galactosidase	+	3.2.1.23
[Ref.: #68382]	beta-galactosidase	+	3.2.1.23	* from API zym
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym
[Ref.: #68382]	beta-glucuronidase	-	3.2.1.31	* from API zym
[Ref.: #122339]	caseinase	-	3.4.21.50
[Ref.: #43349]	catalase	+	1.11.1.6
[Ref.: #122339]	catalase	+	1.11.1.6
[Ref.: #68382]	cystine arylamidase	+	3.4.11.3	* from API zym
[Ref.: #43349]	cytochrome oxidase	+/-	1.9.3.1
[Ref.: #122339]	DNase	+
[Ref.: #68382]	esterase (C 4)	+		* from API zym
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #122339]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #122339]	gelatinase	-
[Ref.: #122339]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #68382]	lipase (C 14)	+		* from API zym
[Ref.: #122339]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #122339]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #122339]	oxidase	-
[Ref.: #68382]	trypsin	+	3.4.21.4	* from API zym
[Ref.: #122339]	tween esterase	-
[Ref.: #122339]	urease	-	3.5.1.5
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #122339]	9728	not determinedn.d.	-	-	-	+	-	+	-	-	-	+	+	+	+	-	-	-	-	-	-	-	-	+	+	-	+	-	+	+	+	-	+	-	+	-	+	+	+	-	+	-	-	-	-	-	-	-	-	-	-

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #122339]	799	not determinedn.d.	+	+	+	-	+	-	-	+	+	+	+	-	-	-	-	+	+	-	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	-	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #122339]	8164	-	+	+	+	+	+	+	+	+	-	+	+	+	+	-	+	+	+	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #663]	Sample type/isolated from	silt-water interface
[Ref.: #663]	Geographic location (country and/or sea, region)	Surrey, Guildford, River Wey
[Ref.: #663]	Country	United Kingdom
[Ref.: #663]	Country ISO 3 Code	GBR
[Ref.: #663]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	The River Wey
[Ref.: #67770]	Geographic location (country and/or sea, region)	Surrey
[Ref.: #67770]	Country	United Kingdom
[Ref.: #67770]	Country ISO 3 Code	GBR
[Ref.: #67770]	Continent	Europe

[Ref.: #122339]	Sample type/isolated from	Environment, Wey River water
[Ref.: #122339]	Geographic location (country and/or sea, region)	Guildford, Surrey
[Ref.: #122339]	Country	United Kingdom
[Ref.: #122339]	Country ISO 3 Code	GBR
[Ref.: #122339]	Continent	Europe
[Ref.: #122339]	Isolation date	1976
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	-
#Environmental	#Terrestrial	#Mud (Sludge)

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #663]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #122339]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #43349]	16S rRNA gene sequence	D12671		GenBank
[Ref.: #663]	Flavobacterium saccharophilum partial 16S rRNA gene, type strain DSM 1811	AM230491	1495	ENA	29534 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Flavobacterium saccharophilum DSM 1811	GCA_900142735	contig	GenBank	29534 tax ID
[Ref.: #66792]	Flavobacterium saccharophilum strain DSM 1811	29534.3	wgs	PATRIC	29534 tax ID	*
[Ref.: #66792]	Flavobacterium saccharophilum DSM 1811	2698536752	draft	JGI IMG/M	29534 tax ID	*

[Ref.: #663]	GC-content	36.2 mol%
[Ref.: #43349]	GC-content	35.7 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	32 mol%	Buoyant density centrifugation (BD)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium saccharophilum strain DSM 1811 PATRIC: 29534.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium saccharophilum strain DSM 1811 PATRIC: 29534.3
[Ref.: #69480]	gram-positive	no	98.061	no
[Ref.: #69480]	anaerobic	no	99.594	yes
[Ref.: #69480]	halophile	no	96.77	no
[Ref.: #69480]	spore-forming	no	94.087	no
[Ref.: #69480]	glucose-util	yes	92.331	yes
[Ref.: #69480]	motile	no	81.678	no
[Ref.: #69480]	flagellated	no	94.313	no
[Ref.: #69480]	thermophile	no	99.832	yes
[Ref.: #69480]	aerobic	yes	91.744	no
[Ref.: #69480]	glucose-ferment	no	89.108	no

Availability in culture collections External links

[Ref.: #663]

Culture collection no.

DSM 1811, IAM 14309, NCMB 2072, JCM 8520, ACAM 581, ATCC 49530, CIP 104743, IFO 15944, LMG 8384, NBRC 15944, NCIMB 2072

[Ref.: #75000]

SI-ID 14015

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Flavobacterium chryseum sp. nov. and Flavobacterium psychroterrae sp. nov., novel environmental bacteria isolated from Antarctica.	Kralova S, Svec P, Busse HJ, Stankova E, Vaczi P, Sedlacek I	Int J Syst Evol Microbiol	10.1099/ijsem.0.002952	2018	*
Phylogeny	Flavobacterium aquidurense sp. nov. and Flavobacterium hercynium sp. nov., from a hard-water creek.	Cousin S, Pauker O, Stackebrandt E	Int J Syst Evol Microbiol	10.1099/ijs.0.64556-0	2007	*

References

#663	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 1811

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#39085 ; Curators of the CIP;

#43349

; 4: 146 - 178 ISBN 978 ( DOI 10.1007/978-0-387-68572-4 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68371

Automatically annotated from API 50CH acid .

#68382

Automatically annotated from API zym .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#75000

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID14015.1 )

#122339 Collection of Institut Pasteur ; Curators of the CIP; CIP 104743
* These data were automatically processed and therefore are not curated

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Flavobacterium saccharophilum strain DSM 1811

Flavobacterium saccharophilum strain DSM 1811

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