Name: Flavobacterium johnsoniae UW 101
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5515

Type strain:

Species: Flavobacterium johnsoniae

Strain Designation: UW 101

Culture col. no.: CCUG 35202, NCIMB 11054, LMG 1341, CFBP 3036, CIP 100931, JCM 8514, DSM 2064, ATCC 17061, IAM 14304, IFO 14942, NBRC 14942, NCIB 11054, Cy j3, MYX 1.1.1, BCRC 14874, GIFU 2500, LMG 1340, NCCB 96103, MYX 1.1.1.

Strain history: CIP <- 1984, DSMZ, Cytophaga johnsonae <- H. Reichenbach: strain Cy j3 <- NCIB <- ATCC <- C.B. van Niel: strain MYX 1.1.1. <- R.Y. Stanier

NCBI tax ID(s): 986 (species)

SI-ID 2148

LMG 1341, ATCC 17061, DSM 2064, LMG 1340, NCIB 11054, CCUG 17935, DSM 425, NCIB 10150, CCUG 35202, NCIMB 11054, CIP 100931, CIP 101265, IAM 14304, IFO 14942, JCM 7450, NCIMB 10150, JCM 8514, VKM B-1399, CECT 5015, NBRC 14942, NCCB 96103, LMD 96.103, CFBP 3036, BCRC 14874, CCRC 14874

Other strains from Flavobacterium johnsoniae

F. johnsoniae CIP 100068

Section

Flavobacterium johnsoniae UW 101 is an obligate aerobe, mesophilic, Gram-negative animal pathogen that forms circular colonies and was isolated from Soil or mud.

colony-forming
Gram-negative
motile
rod-shaped
animal pathogen
mesophilic
obligate aerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Flavobacterium*
	Species	**Flavobacterium johnsoniae**
	Full Scientific Name (LPSN)	Flavobacterium johnsoniae corrig. (Stanier 1947) Bernardet et al. 1996

	Synonym	Flavobacterium johnsonae
	Synonym	Cytophaga johnsonae

Information on morphological and physiological properties Morphology

[Ref.: #43346]	Gram stain	negative
[Ref.: #120355]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.998

[Ref.: #43346]	Cell length	1.5-15 µm

[Ref.: #43346]	Cell width	0.3-0.4 µm

[Ref.: #43346]	Cell shape	rod-shaped
[Ref.: #120355]	Cell shape	rod-shaped

[Ref.: #43346]	Motility	yes
[Ref.: #120355]	Motility	no

[Ref.: #43346]	Flagellum arrangement	gliding

[Ref.: #43346]	Colony color	deep orange, pale yellow
[Ref.: #43346]	Colony shape	circular

[Ref.: #120355]	Pigment production	no
[Ref.: #120355]	Pigment name	Flexirubin

Information on culture and growth conditions Culture and growth conditions

[Ref.: #700]

Culture medium

R2A MEDIUM (DSMZ Medium 830)

[Ref.: #700]

Culture medium growth

[Ref.: #700]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #700]

Culture medium

CY-AGAR (DSMZ Medium 67)

[Ref.: #700]

Culture medium growth

[Ref.: #700]

Culture medium link

Medium recipe at MediaDive

[Ref.: #700]

Culture medium composition

expand / minimize

[Ref.: #39783]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #39783]

Culture medium growth

[Ref.: #39783]

Culture medium composition

expand / minimize

[Ref.: #43346]

Culture medium

Nutrient agar (NA)

[Ref.: #43346]

Culture medium growth

[Ref.: #43346]

Culture medium

Tryptic Soy Agar (TSA)

[Ref.: #43346]

Culture medium growth

[Ref.: #120355]

Culture medium

CIP Medium 3

[Ref.: #120355]

Culture medium growth

[Ref.: #120355]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #120355]

Culture medium

CIP Medium 72

[Ref.: #120355]

Culture medium growth

[Ref.: #120355]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #43346]

Culture medium

Marine agar (MA)

[Ref.: #43346]

Culture medium growth

	Kind of temperature		Temperature
[Ref.: #700]		growth	28 °C
[Ref.: #39783]		growth	25 °C
[Ref.: #43346]		optimum	25-30 °C
[Ref.: #43346]		growth	10-30 °C
[Ref.: #52589]		growth	30 °C
[Ref.: #67770]		growth	25 °C
[Ref.: #120355]		growth	10-30 °C
[Ref.: #120355]	no	growth	5 °C
[Ref.: #120355]	no	growth	37 °C
[Ref.: #120355]	no	growth	41 °C
[Ref.: #120355]	no	growth	45 °C

[Ref.: #700]	Temperature range	mesophilic
[Ref.: #39783]	Temperature range	mesophilic
[Ref.: #43346]	Temperature range	mesophilic
[Ref.: #52589]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #120355]	Temperature range	psychrophilic
[Ref.: #120355]	Temperature range	mesophilic
[Ref.: #120355]	Temperature range	thermophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #43346]	Oxygen tolerance	obligate aerobe
[Ref.: #52589]	Oxygen tolerance	aerobe
[Ref.: #120355]	Oxygen tolerance	obligate aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.995

	Salt	Tested relation		Salt conc.
[Ref.: #43346]	NaCl		growth	0-1	%(w/v)
[Ref.: #120355]	NaCl		growth	0-2	%
[Ref.: #120355]	NaCl	no	growth	4	%
[Ref.: #120355]	NaCl	no	growth	6	%
[Ref.: #120355]	NaCl	no	growth	8	%
[Ref.: #120355]	NaCl	no	growth	10	%

[Ref.: #67770]

Observation

quinones: MK-6

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68369]	adipate ChEBI	-	assimilation	* from API 20NE
[Ref.: #43346]	agar ChEBI	-	degradation
[Ref.: #43346]	alginate ChEBI	+	degradation
[Ref.: #43346]	ammonium ChEBI	+	nitrogen source
[Ref.: #43346]	arabinose ChEBI	+	growth
[Ref.: #68369]	arginine ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #43346]	carboxymethylcellulose ChEBI	+	degradation
[Ref.: #43346]	casamino acids	+	nitrogen source
[Ref.: #43346]	casein	+	degradation
[Ref.: #43346]	cellobiose ChEBI	+	growth
[Ref.: #43346]	chitin ChEBI	+	growth
[Ref.: #43346]	chitin ChEBI	+	degradation
[Ref.: #120355]	citrate ChEBI	-	carbon source
[Ref.: #68369]	D-glucose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	D-glucose ChEBI	-	fermentation	* from API 20NE
[Ref.: #68369]	D-mannitol ChEBI	-	assimilation	* from API 20NE
[Ref.: #68369]	D-mannose ChEBI	+	assimilation	* from API 20NE
[Ref.: #68369]	decanoate ChEBI	-	assimilation	* from API 20NE
[Ref.: #43346]	dna ChEBI	+	degradation
[Ref.: #43346]	esculin ChEBI	+	degradation
[Ref.: #120355]	esculin ChEBI	+	hydrolysis
[Ref.: #68369]	esculin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #43346]	galactose ChEBI	+	growth
[Ref.: #43346]	gelatin ChEBI	+	degradation
[Ref.: #68369]	gelatin ChEBI	+	hydrolysis	* from API 20NE
[Ref.: #68369]	gluconate ChEBI	-	assimilation	* from API 20NE
[Ref.: #43346]	glucose ChEBI	+	growth
[Ref.: #43346]	glucose ChEBI	+	assimilation
[Ref.: #120355]	hippurate ChEBI	-	hydrolysis
[Ref.: #43346]	inulin ChEBI	+	growth
[Ref.: #68369]	L-arabinose ChEBI	+	assimilation	* from API 20NE
[Ref.: #43346]	L-glutamate ChEBI	+	nitrogen source
[Ref.: #43346]	lactose ChEBI	+	growth
[Ref.: #43346]	lecithin ChEBI	-	degradation
[Ref.: #68369]	malate ChEBI	-	assimilation	* from API 20NE
[Ref.: #120355]	malonate ChEBI	-	assimilation
[Ref.: #43346]	maltose ChEBI	+	growth
[Ref.: #68369]	maltose ChEBI	+	assimilation	* from API 20NE
[Ref.: #43346]	mannose ChEBI	+	growth
[Ref.: #68369]	N-acetylglucosamine ChEBI	+	assimilation	* from API 20NE
[Ref.: #43346]	nitrate ChEBI	+	nitrogen source
[Ref.: #120355]	nitrate ChEBI	-	builds gas from
[Ref.: #120355]	nitrate ChEBI	+	reduction
[Ref.: #68369]	nitrate ChEBI	-	reduction	* from API 20NE
[Ref.: #120355]	nitrite ChEBI	-	builds gas from
[Ref.: #120355]	nitrite ChEBI	+	reduction
[Ref.: #43346]	pectin ChEBI	+	degradation
[Ref.: #43346]	peptone	+	nitrogen source
[Ref.: #43346]	raffinose ChEBI	+	growth
[Ref.: #43346]	starch ChEBI	+	growth
[Ref.: #43346]	starch ChEBI	+	degradation
[Ref.: #43346]	sucrose ChEBI	+	growth
[Ref.: #43346]	tributyrin ChEBI	+	degradation
[Ref.: #68369]	tryptophan ChEBI	-	energy source	* from API 20NE
[Ref.: #43346]	tween 20 ChEBI	+	degradation
[Ref.: #43346]	tween 40 ChEBI	+	degradation
[Ref.: #43346]	tween 60 ChEBI	+	degradation
[Ref.: #43346]	tween 80 ChEBI	+	degradation
[Ref.: #43346]	tyrosine ChEBI	+	degradation
[Ref.: #43346]	urea ChEBI	+	degradation
[Ref.: #68369]	urea ChEBI	-	hydrolysis	* from API 20NE
[Ref.: #43346]	xylose ChEBI	+	growth
	Only first 10 entries are displayed. Click here to see all.

	Antibiotica	Metabolite	Antibiotic sensitivity	Antibiotic resistance
[Ref.: #120355]		0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)	no	yes

	Metabolite	Production
[Ref.: #43346]	hydrogen sulfide ChEBI	no
[Ref.: #43346]	indole ChEBI	no
[Ref.: #120355]	indole ChEBI	no
[Ref.: #68369]	indole ChEBI	no	* from API 20NE

	Metabolite	Voges-Proskauer-test	Methylred-test	Indole test
[Ref.: #120355]	acetoin ChEBI	-
[Ref.: #120355]	glucose ChEBI		-
[Ref.: #68369]	indole ChEBI			-	* from API 20NE

	Enzyme	Enzyme activity	EC number
[Ref.: #68382]	acid phosphatase	+	3.1.3.2	* from API zym
[Ref.: #120355]	alcohol dehydrogenase	-	1.1.1.1
[Ref.: #68382]	alkaline phosphatase	+	3.1.3.1	* from API zym
[Ref.: #68382]	alpha-fucosidase	-	3.2.1.51	* from API zym
[Ref.: #68382]	alpha-galactosidase	-	3.2.1.22	* from API zym
[Ref.: #68382]	alpha-glucosidase	+	3.2.1.20	* from API zym
[Ref.: #120355]	amylase	-
[Ref.: #68369]	arginine dihydrolase	-	3.5.3.6	* from API 20NE
[Ref.: #43346]	beta-galactosidase	+	3.2.1.23
[Ref.: #120355]	beta-galactosidase	-	3.2.1.23
[Ref.: #68382]	beta-glucosidase	+	3.2.1.21	* from API zym, API 20NE
[Ref.: #120355]	caseinase	+	3.4.21.50
[Ref.: #43346]	catalase	+	1.11.1.6
[Ref.: #120355]	catalase	+	1.11.1.6
[Ref.: #43346]	cytochrome oxidase	+	1.9.3.1
[Ref.: #68369]	cytochrome oxidase	+	1.9.3.1	* from API 20NE
[Ref.: #120355]	DNase	-
[Ref.: #68382]	esterase lipase (C 8)	+		* from API zym
[Ref.: #120355]	gamma-glutamyltransferase	+	2.3.2.2
[Ref.: #120355]	gelatinase	+/-
[Ref.: #68369]	gelatinase	+		* from API 20NE
[Ref.: #120355]	lecithinase	-
[Ref.: #68382]	leucine arylamidase	+	3.4.11.1	* from API zym
[Ref.: #120355]	lipase	-
[Ref.: #68382]	lipase (C 14)	-		* from API zym
[Ref.: #120355]	lysine decarboxylase	-	4.1.1.18
[Ref.: #68382]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API zym
[Ref.: #68382]	naphthol-AS-BI-phosphohydrolase	+		* from API zym
[Ref.: #120355]	ornithine decarboxylase	-	4.1.1.17
[Ref.: #120355]	oxidase	+
[Ref.: #120355]	phenylalanine ammonia-lyase	-	4.3.1.24
[Ref.: #120355]	protease	-
[Ref.: #120355]	tryptophan deaminase	-
[Ref.: #120355]	tween esterase	-
[Ref.: #120355]	urease	-	3.5.1.5
[Ref.: #68369]	urease	-	3.5.1.5	* from API 20NE
[Ref.: #68382]	valine arylamidase	+		* from API zym
	Only first 10 entries are displayed. Click here to see all.

API® 20NE:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Reduction of nitratesNO3	Indole productionTRP	Fermentation of D-glucoseGLU_ Ferm	Arginine dihydrolaseADH (Arg)	Urease/urea hydrolysisURE	Esculin hydrolysis/beta-GlucosidaseESC	Gelatinase/gelatin hydrolysisGEL	beta-GalactosidasePNPG	Assimilation of D-glucoseGLU_ Assim	Assimilation of L-arabinoseARA	Assimilation of D-mannoseMNE	Assimilation of D-mannitolMAN	Assimilation of N-acetyl-glucosamineNAG	Assimilation of maltoseMAL	Assimilation of gluconateGNT	Assimilation of capric acidCAP	Assimilation adipic acidADI	Assimilation of malic acidMLT	Assimilation of citric acidCIT	Assimilation of phenyl-acetic acidPAC	Cytochrome oxidaseOX
[Ref.: #52589]	7760	-	-	-	-	-	+	+	+	+	+	+	-	+	+	-	-	-	-	-	-	+

API® Biotype100:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
[Ref.: #120355]	59	not determinedn.d.	+	+	+	+	+	-	-	-	-	+	+	-	-	-	-	+	+	+	+	-	+	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	+	-	-	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+	-	-	+	+	+	-	-	-	-	-	-	-

API® zym:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Control	2-naphthyl phosphateAlkaline phosphatase	2-naphthyl butyrateEsterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	2-naphthyl myristateLipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	N-benzoyl-DL-arginine-2-naphthylamideTrypsin	N-glutaryl-phenylalanine-2-naphthylamidealpha- Chymotrypsin	2-naphthyl phosphateAcid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	6-Br-2-naphthyl-alphaD-galactpyranosidealpha- Galactosidase	2-naphthyl-betaD-galactpyranosidebeta- Galactosidase	Naphthol-AS-BI-betaD-glucuronidebeta- Glucuronidase	2-naphthyl-alphaD-glucopyranosidealpha- Glucosidase	6-Br-2-naphthyl-betaD-glucopyranosidebeta- Glucosidase	1-naphthyl-N-acetyl-betaD-glucosaminideN-acetyl-beta- glucosaminidase	6-Br-2-naphthyl-alphaD-mannopyranosidealpha- Mannosidase	2-naphthyl-alphaL-fucopyranosidealpha- Fucosidase
[Ref.: #52589]	3928	-	+	-	+	-	+	+	-	-	-	+	+	-	-	-	+	+	+	-	-
[Ref.: #120355]	6652	-	+	+	+	-	+	+	+	+	+	+	+	-	+	+	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #52589]	Sample type/isolated from	Soil or mud
[Ref.: #52589]	Geographic location (country and/or sea, region)	Rothamsted or Cambridge
[Ref.: #52589]	Country	United Kingdom
[Ref.: #52589]	Country ISO 3 Code	GBR
[Ref.: #52589]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Soil or mud
[Ref.: #67770]	Geographic location (country and/or sea, region)	Rothamsted or Cambridge
[Ref.: #67770]	Country	United Kingdom
[Ref.: #67770]	Country ISO 3 Code	GBR
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Environmental	#Terrestrial	#Mud (Sludge)
#Environmental	#Terrestrial	#Soil

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AM230489 (>99% sequence identity) for Flavobacterium johnsoniae subclade from Microbeatlas

Aquatic Samples	268
Soil Samples	358
Animal Samples	368
Plant Samples	85
Total Samples	1079

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #700]	Pathogenicity (animal)	yes
[Ref.: #700]	Biosafety level	1	Risk group (German classification) According to TRBA 466
[Ref.: #120355]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #700]	Flavobacterium johnsoniae partial 16S rRNA gene, type strain DSM 2064	AM230489	1501	ENA	376686 tax ID
[Ref.: #20218]	Flavobacterium johnsoniae 16S ribosomal RNA gene, partial sequence	M59051	1463	ENA	986 tax ID	*
[Ref.: #20218]	Flavobacterium johnsoniae gene for 16S ribosomal RNA, partial sequence, strain: IFO 14942	D12664	1256	ENA	376686 tax ID	*
[Ref.: #20218]	Flavobacterium johnsoniae strain DSM 2064 16S ribosomal RNA gene, partial sequence	JX657050	1264	ENA	986 tax ID	*
[Ref.: #20218]	Flavobacterium johnsoniae strain ATCC 17061 16S-23S ribosomal RNA intergenic spacer, partial sequence	AY753067	629	ENA	376686 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Flavobacterium johnsoniae UW101 ATCC 17061	GCA_002221975	scaffold	GenBank	376686 tax ID
[Ref.: #67770]	Flavobacterium johnsoniae UW101 UW101; ATCC 17061	GCA_000016645	complete	GenBank	376686 tax ID
[Ref.: #67770]	Flavobacterium johnsoniae DSM 2064	GCA_900142355	scaffold	GenBank	986 tax ID
[Ref.: #66792]	Flavobacterium johnsoniae UW101	376686.29	wgs	PATRIC	376686 tax ID	*
[Ref.: #66792]	Flavobacterium johnsoniae strain DSM 2064	986.10	wgs	PATRIC	986 tax ID	*
[Ref.: #66792]	Flavobacterium johnsoniae DSM 2064	2698536700	draft	JGI IMG/M	986 tax ID	*

[Ref.: #700]	GC-content	33.0 mol%
[Ref.: #43346]	GC-content	33-35.2 mol%	thermal denaturation, midpoint method (Tm)
[Ref.: #67770]	GC-content	33 mol%	Buoyant density centrifugation (BD)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Flavobacterium johnsoniae UW101 PATRIC: 376686.10
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Flavobacterium johnsoniae UW101 PATRIC: 376686.10
[Ref.: #69480]	gram-positive	no	98.479	no
[Ref.: #69480]	anaerobic	no	99.623	yes
[Ref.: #69480]	halophile	no	95.779	yes
[Ref.: #69480]	spore-forming	no	92.889	no
[Ref.: #69480]	glucose-util	yes	90.375	yes
[Ref.: #69480]	aerobic	yes	88.503	yes
[Ref.: #69480]	motile	no	84.17	no
[Ref.: #69480]	flagellated	no	93.895	yes
[Ref.: #69480]	thermophile	no	99.68	yes
[Ref.: #69480]	glucose-ferment	no	88.066	no

Availability in culture collections External links

[Ref.: #700]

Culture collection no.

CCUG 35202, NCIMB 11054, LMG 1341, CFBP 3036, CIP 100931, JCM 8514, DSM 2064, ATCC 17061, IAM 14304, IFO 14942, NBRC 14942, NCIB 11054, Cy j3, MYX 1.1.1, BCRC 14874, GIFU 2500, LMG 1340, NCCB 96103, MYX 1.1.1.

[Ref.: #74999]

SI-ID 2148

Literature:

Topic	Title	Authors	Journal	DOI	Year
Metabolism	A glycoside hydrolase family 31 dextranase with high transglucosylation activity from Flavobacterium johnsoniae.	Gozu Y, Ishizaki Y, Hosoyama Y, Miyazaki T, Nishikawa A, Tonozuka T	Biosci Biotechnol Biochem	10.1080/09168451.2016.1182852	2016	*
Phylogeny	Identification and characterization of cellobiose 2-epimerases from various aerobes.	Ojima T, Saburi W, Yamamoto T, Mori H, Matsui H	Biosci Biotechnol Biochem	10.1271/bbb.120742	2013	*
Phylogeny	Flavobacterium defluvii sp. nov., isolated from activated sludge.	Park M, Ryu SH, Vu TT, Ro HS, Yun PY, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.64669-0	2007	*
Enzymology	Molecular and biochemical characterization of a carbapenem-hydrolysing beta-lactamase from Flavobacterium johnsoniae.	Naas T, Bellais S, Nordmann P	J Antimicrob Chemother	10.1093/jac/dkg069	2003	*
Biotechnology	Properties of Cytophaga johnsonae strains causing spoilage of fresh produce at food markets.	Liao CH, Wells JM	Appl Environ Microbiol	10.1128/aem.52.6.1261-1265.1986	1986	*

References

#700	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 2064

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#39783 ; Curators of the CIP;

#43346

; 4: 145 - 175 ISBN 978 ( DOI 10.1007/978-0-387-68572-4 )

#52589 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 35202

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68369

Automatically annotated from API 20NE .

#68382

Automatically annotated from API zym .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74999

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID2148.1 )

#120355 Collection of Institut Pasteur ; Curators of the CIP; CIP 100931
* These data were automatically processed and therefore are not curated

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Flavobacterium johnsoniae UW101

Flavobacterium johnsoniae UW101

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