Name: Capnocytophaga leadbetteri DSM 22902
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5495

Type strain:

Species: Capnocytophaga leadbetteri

Culture col. no.: DSM 22902, CCUG 51857, NCTC 13375, AHN 8855

Strain history: <- CCUG <- E. V. G. Frandsen, Univ. Aarhus, Royal Dental College, Denmark <- E. Könönen, Natl. Pub. Health Inst. (KTL), Helsinki, Finland

NCBI tax ID(s): 327575 (species)

SI-ID 303176

CCUG 51857, NCTC 13375, DSM 22902

Section

Capnocytophaga leadbetteri DSM 22902 is a microaerophile, mesophilic, Gram-negative human pathogen that was isolated from human oral cavity, child.

Gram-negative
motile
rod-shaped
human pathogen
mesophilic
microaerophile
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Bacteroidota*
	Class	*Flavobacteriia*
	Order	*Flavobacteriales*
	Family	*Flavobacteriaceae*
	Genus	*Capnocytophaga*
	Species	**Capnocytophaga leadbetteri**
	Full Scientific Name (LPSN)	Capnocytophaga leadbetteri Frandsen et al. 2008

Information on morphological and physiological properties Morphology

[Ref.: #32357]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.993

[Ref.: #32357]	Cell length	4 µm

[Ref.: #32357]	Cell width	0.4 µm

[Ref.: #32357]	Cell shape	rod-shaped

[Ref.: #32357]	Motility	yes
[Ref.: #69480]	Motility	no Confidence in %93.116

[Ref.: #32357]	Flagellum arrangement	gliding

[Ref.: #16613]	Type of hemolysis	alpha
[Ref.: #16613]	Hemolysis ability	1

[Ref.: #59345]	Incubation period	2 days

[Ref.: #32357]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16613]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #16613]

Culture medium growth

[Ref.: #16613]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16613]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16613]			growth	37 °C
[Ref.: #59345]			growth	37 °C

[Ref.: #16613]	Temperature range	mesophilic
[Ref.: #59345]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16613]	Oxygen tolerance	microaerophile
[Ref.: #32357]	Oxygen tolerance	anaerobe
[Ref.: #59345]	Oxygen tolerance	microaerophile

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.993

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68381]	alpha-cyclodextrin ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	arginine ChEBI	-	hydrolysis	* from API rID32STR
[Ref.: #68381]	D-arabitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68377]	D-fructose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	D-glucose ChEBI	+	builds acid from	* from API NH
[Ref.: #68381]	D-mannitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-ribose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	D-tagatose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #32357]	galactose ChEBI	+	carbon source
[Ref.: #32357]	glucose ChEBI	+	carbon source
[Ref.: #68381]	glycogen ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	hippurate ChEBI	-	hydrolysis	* from API rID32STR
[Ref.: #68381]	L-arabinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #32357]	lactose ChEBI	+	carbon source
[Ref.: #68381]	lactose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	maltose ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	melezitose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	melibiose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	methyl beta-D-glucopyranoside ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #32357]	nitrate ChEBI	+	reduction
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #68381]	pullulan ChEBI	+	builds acid from	* from API rID32STR
[Ref.: #68381]	raffinose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68381]	sorbitol ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68377]	sucrose ChEBI	-	builds acid from	* from API NH, API rID32STR
[Ref.: #68381]	trehalose ChEBI	-	builds acid from	* from API rID32STR
[Ref.: #68377]	tryptophan ChEBI	-	energy source	* from API NH
[Ref.: #68377]	urea ChEBI	-	hydrolysis	* from API NH, API rID32STR
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68381]		acetoin ChEBI	no	* from API rID32STR
[Ref.: #68377]		indole ChEBI	no	* from API NH

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68381]		acetoin ChEBI	-		* from API rID32STR
[Ref.: #68377]		indole ChEBI		-	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #32357]	acid phosphatase	+	3.1.3.2
[Ref.: #68381]	Alanyl-Phenylalanyl-Proline arylamidase	+		* from API rID32STR
[Ref.: #68381]	alkaline phosphatase	+	3.1.3.1	* from API rID32STR, API NH
[Ref.: #68381]	alpha-galactosidase	+	3.2.1.22	* from API rID32STR
[Ref.: #68381]	arginine dihydrolase	-	3.5.3.6	* from API rID32STR
[Ref.: #68381]	beta-galactosidase	+	3.2.1.23	* from API rID32STR, API NH
[Ref.: #68381]	beta-glucosidase	-	3.2.1.21	* from API rID32STR
[Ref.: #68381]	beta-glucuronidase	-	3.2.1.31	* from API rID32STR
[Ref.: #68381]	beta-mannosidase	-	3.2.1.25	* from API rID32STR
[Ref.: #16613]	catalase	-	1.11.1.6
[Ref.: #16613]	cytochrome-c oxidase	-	1.9.3.1
[Ref.: #68381]	glycyl tryptophan arylamidase	+		* from API rID32STR
[Ref.: #68381]	N-acetyl-beta-glucosaminidase	+	3.2.1.52	* from API rID32STR
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #68377]	proline-arylamidase	+	3.4.11.5	* from API NH
[Ref.: #68381]	pyrrolidonyl arylamidase	-	3.4.19.3	* from API rID32STR
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH
[Ref.: #68381]	urease	-	3.5.1.5	* from API rID32STR, API NH
	Only first 10 entries are displayed. Click here to see all.

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #16613]	6178	+	+	+	-	-	-	-	+	+	+	+	-	-
[Ref.: #16613]	5694	-	+	+	+	-	-	-	-	+	+	+	+	-

API® rID32STR:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Arginine dihydrolaseADH (Arg)	beta-Glucosidasebeta GLU	beta-Galactosidasebeta GAR	beta-Glucuronidasebeta GUR	alpha-Galactosidasealpha GAL	Alkaline PhosphatasePAL	Acid from D-riboseRIB	Acid from D-mannitolMAN	Acid from sorbitolSOR	Acid from lactoseLAC	Acid from trehaloseTRE	Acid from raffinoseRAF	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta-Galactosidasebeta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	Hydrolysis of hippuric acidHIP	Acid from glycogenGLYG	Acid from pullulanPUL	Acid from maltoseMAL	Acid from melibioseMEL	Acid from melezitoseMLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	Acid from D-tagatoseTAG	beta-Mannosidasebeta MAN	Urease/urea hydrolysisURE
[Ref.: #16613]	10545	-	-	+	-	+	+	-	-	-	+	-	-	-	-	-	-	-	+	+	-	+	+	-	-	+	+	-	-	-	-	-	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16613]	Sample type/isolated from	human oral cavity, child
[Ref.: #16613]	Country	Finland
[Ref.: #16613]	Country ISO 3 Code	FIN
[Ref.: #16613]	Continent	Europe

[Ref.: #59345]	Sample type/isolated from	Human oral cavity,child
[Ref.: #59345]	Sampling date	1994
[Ref.: #59345]	Country	Finland
[Ref.: #59345]	Country ISO 3 Code	FIN
[Ref.: #59345]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	#Child
#Host Body-Site	#Oral cavity and airways	-

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16613]	Pathogenicity (human)	yes, in single cases
[Ref.: #16613]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16613]	Capnocytophaga leadbetteri strain AHN8855 16S ribosomal RNA gene, partial sequence	DQ009623	1486	ENA	327575 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Capnocytophaga leadbetteri DSM 22902	GCA_003054025	scaffold	GenBank	327575 tax ID	*
[Ref.: #66792]	Capnocytophaga leadbetteri strain DSM 22902	327575.4	wgs	PATRIC	327575 tax ID	*
[Ref.: #66792]	Capnocytophaga leadbetteri DSM 22902	2734482253	draft	JGI IMG/M	327575 tax ID	*

[Ref.: #16613]	GC-content	41.3 mol%	high performance liquid chromatography (HPLC)
[Ref.: #32357]	GC-content	41.3 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Capnocytophaga leadbetteri strain DSM 22902 PATRIC: 327575.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Capnocytophaga leadbetteri DSM 22902 NCBI: GCA_003054025.1
[Ref.: #69480]	flagellated	no	96.144	no
[Ref.: #69480]	gram-positive	no	98.572	no
[Ref.: #69480]	anaerobic	no	88.207	no
[Ref.: #69480]	halophile	no	61.309	no
[Ref.: #69480]	spore-forming	no	96.364	no
[Ref.: #69480]	thermophile	no	98.538	no
[Ref.: #69480]	glucose-util	yes	86.407	yes
[Ref.: #69480]	aerobic	no	96.148	yes
[Ref.: #69480]	motile	no	92.208	no
[Ref.: #69480]	glucose-ferment	no	68.124	no

Availability in culture collections External links

[Ref.: #16613]

Culture collection no.

DSM 22902, CCUG 51857, NCTC 13375, AHN 8855

[Ref.: #74982]

SI-ID 303176

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Isolation and Characterization of Capnocytophaga bilenii sp. nov., a Novel Capnocytophaga Species Detected in a Gingivitis Subject.	Antezack A, Boxberger M, La Scola B, Monnet-Corti V	Pathogens	10.3390/pathogens10050547	2021	*
Phylogeny	Diversity of Capnocytophaga species in children and description of Capnocytophaga leadbetteri sp. nov. and Capnocytophaga genospecies AHN8471.	Frandsen EV, Poulsen K, Kononen E, Kilian M	Int J Syst Evol Microbiol	10.1099/ijs.0.65373-0	2008	*

References

#16613

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22902

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#32357

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28586 (see below)

#59345 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51857

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68377

Automatically annotated from API NH .

#68381

Automatically annotated from API rID32STR .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74982

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID303176.1 )

#28586

IJSEM 324 2008 ( DOI 10.1099/ijs.0.65373-0 , PubMed 18218926 )

* These data were automatically processed and therefore are not curated

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Capnocytophaga leadbetteri strain DSM 22902

Capnocytophaga leadbetteri DSM 22902

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