Name: Capnocytophaga genospecies AHN8471 DSM 22849
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5496

Type strain:

Species: Capnocytophaga genospecies AHN8471

Culture col. no.: DSM 22849, CCUG 51856, NCTC 13374, AHN 8471

Strain history: <- CCUG; AHN 8471 <- E. V. G. Frandsen <- E. Könönen

NCBI tax ID(s): 327574 (species)

Section

Capnocytophaga genospecies AHN8471 DSM 22849 is a microaerophile, mesophilic bacterium that was isolated from oral cavity of a child.

mesophilic
microaerophile
16S sequence
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

[Ref.: #16422]	Domain	Bacteria
[Ref.: #16422]	Phylum	Bacteroidetes
[Ref.: #16422]	Class	Flavobacteriia
[Ref.: #16422]	Order	Flavobacteriales
[Ref.: #16422]	Family	Flavobacteriaceae
[Ref.: #16422]	Genus	Capnocytophaga
[Ref.: #16422]	Species	Capnocytophaga genospecies AHN8471
[Ref.: #16422]	Full Scientific Name	Capnocytophaga genospecies AHN8471
[Ref.: #16422]	Type strain

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.988

[Ref.: #69480]	Motility	no Confidence in %93.905

[Ref.: #59344]

Incubation period

2 days

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16422]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #16422]

Culture medium growth

[Ref.: #16422]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16422]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16422]			growth	37 °C
[Ref.: #59344]			growth	37 °C

[Ref.: #16422]	Temperature range	mesophilic
[Ref.: #59344]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #16422]	Oxygen tolerance	microaerophile
[Ref.: #59344]	Oxygen tolerance	microaerophile

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.994

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68377]	D-fructose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	D-glucose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	maltose ChEBI	+	builds acid from	* from API NH
[Ref.: #68377]	ornithine ChEBI	-	degradation	* from API NH
[Ref.: #68377]	tryptophan ChEBI	-	energy source	* from API NH

	Metabolite production	Metabolite	Production
[Ref.: #68377]		indole ChEBI	no	* from API NH

	Physiological tests	Metabolite	Indole test
[Ref.: #68377]		indole ChEBI	-	* from API NH

	Enzyme	Enzyme activity	EC number
[Ref.: #68377]	alkaline phosphatase	+	3.1.3.1	* from API NH
[Ref.: #68377]	beta-galactosidase	+	3.2.1.23	* from API NH
[Ref.: #68377]	lipase	+		* from API NH
[Ref.: #68377]	ornithine decarboxylase	-	4.1.1.17	* from API NH
[Ref.: #68377]	proline-arylamidase	+	3.4.11.5	* from API NH
[Ref.: #68377]	tryptophan deaminase	-	4.1.99.1	* from API NH

API® NH:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Penicillinase productionPEN	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from maltoseMAL	Acid from sucroseSAC	Ornithine decarboxylaseODC	Urease/urea hydrolysisURE	LipaseLIP	Alkaline phosphatasePAL	beta-Galactosidasebeta GAL	Proline arylamidaseProA	gamma-Glutamyl transferaseGGT	Indole productionIND
[Ref.: #16422]	6177	+	+	+	+	-	-	+	+	+	+	+	-	-
[Ref.: #16422]	5695	-	+	+	+	+	-	-	+	+	+	+	+	-

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16422]	Sample type/isolated from	oral cavity of a child
[Ref.: #16422]	Country	Denmark
[Ref.: #16422]	Country ISO 3 Code	DNK
[Ref.: #16422]	Continent	Europe

[Ref.: #59344]	Sample type/isolated from	Human ?,child
[Ref.: #59344]	Sampling date	1994
[Ref.: #59344]	Country	Finland
[Ref.: #59344]	Country ISO 3 Code	FIN
[Ref.: #59344]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Infection	#Patient	-
#Host Body-Site	#Oral cavity and airways	-
#Host	#Human	#Child

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ009622 (>99% sequence identity) for Capnocytophaga endodontalis subclade from Microbeatlas

Aquatic Samples	467
Soil Samples	394
Animal Samples	26648
Plant Samples	142
Total Samples	27651

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16422]	Capnocytophaga genosp. AHN8471 16S ribosomal RNA gene, partial sequence	DQ009622	1486	ENA	327574 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Capnocytophaga genosp. AHN8471 AHN 8471 = CCUG 51856 = NCTC 13374	GCA_016806995	contig	GenBank	327574 tax ID	*
[Ref.: #66792]	Capnocytophaga genosp. AHN8471 strain AHN 8471 = CCUG 51856 = NCTC 13374	327574.7	wgs	PATRIC	327574 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Capnocytophaga genosp. AHN8471 strain AHN 8471 = CCUG 51856 = NCTC 13374 PATRIC: 327574.7
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Capnocytophaga genosp. AHN8471 strain AHN 8471 = CCUG 51856 = NCTC 13374 PATRIC: 327574.7
[Ref.: #69480]	gram-positive	no	97.824	no
[Ref.: #69480]	anaerobic	no	88.761	no
[Ref.: #69480]	halophile	no	62.994	no
[Ref.: #69480]	spore-forming	no	95.671	no
[Ref.: #69480]	glucose-util	yes	86.48	no
[Ref.: #69480]	flagellated	no	95.147	no
[Ref.: #69480]	thermophile	no	99.212	yes
[Ref.: #69480]	aerobic	no	94.399	yes
[Ref.: #69480]	motile	no	92.287	no
[Ref.: #69480]	glucose-ferment	no	67.818	no

Availability in culture collections External links

[Ref.: #16422]

Culture collection no.

DSM 22849, CCUG 51856, NCTC 13374, AHN 8471

References

#16422

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22849

#59344 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 51856

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68377

Automatically annotated from API NH .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Capnocytophaga genosp. AHN8471 strain AHN 8471 = CCUG 51856 = NCTC 13374

Capnocytophaga genosp. AHN8471 strain AHN 8471 = CCUG 51856 = NCTC 13374

Change proposal

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