Eubacterium nodatum (DSM 3993, ATCC 33099, CCUG 15996)

Name: Eubacterium nodatum (DSM 3993, ATCC 33099, CCUG 15996)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5437

Type strain

Strain Designation D6A-5

Culture col. no. DSM 3993 ATCC 33099 CCUG 15996 JCM 14550 VPI D6 A-5 4 more

NCBI tax ID(s) 1161902 35518

Special Collections DSMZ CCUG JCM CIP

History <- ATCC <- L.V. Holdeman, VPI D6 A-5 CCUG 15996 <-- VPI D6A-5. CIP <- 1994, ATCC <- L.V. Holdeman, VPI: strain D6A-5

Links

Eubacterium nodatum D6A-5 is an anaerobe bacterium that was isolated from subgingival region of mouth.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 40331

ATCC 33099,CIP 104213,CCUG 15996,DSM 3993,JCM 9977,JCM 14550

@ref 20215

Last LPSN update 2026-02-09 11:18:58

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Eubacteriaceae

Genus Eubacterium

Species Eubacterium nodatum

Full scientific name Eubacterium nodatum Holdeman et al. 1980

Morphology

Colony morphology

46403

Incubation period3 days

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1563	PYG MEDIUM (MODIFIED) (DSMZ Medium 104)	Medium recipe at MediaDive	Name: PYG MEDIUM (modified) (DSMZ Medium 104) Composition: Yeast extract 10.0 g/l Peptone 5.0 g/l Trypticase peptone 5.0 g/l Beef extract 5.0 g/l Glucose 5.0 g/l L-Cysteine HCl x H2O 0.5 g/l NaHCO3 0.4 g/l NaCl 0.08 g/l K2HPO4 0.04 g/l KH2PO4 0.04 g/l MgSO4 x 7 H2O 0.02 g/l CaCl2 x 2 H2O 0.01 g/l Hemin 0.005 g/l Ethanol 0.0038 g/l Resazurin 0.001 g/l Tween 80 Vitamin K1 NaOH Distilled water
1563	CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110)	Medium recipe at MediaDive	Name: CHOPPED MEAT MEDIUM WITH CARBOHYDRATES (DSMZ Medium 110) Composition: Ground beef 500.0 g/l Casitone 30.0 g/l Agar 15.0 g/l K2HPO4 5.0 g/l Yeast extract 5.0 g/l D-Glucose 4.0 g/l Starch 1.0 g/l Maltose 1.0 g/l Cellobiose 1.0 g/l L-Cysteine HCl 0.5 g/l Ethanol 0.19 g/l Vitamin K3 0.05 g/l Hemin 0.005 g/l Sodium resazurin 0.0005 g/l Vitamin K1 NaOH Distilled water
34564	MEDIUM 187 - for anaerobic bacteria		Distilled water make up to (1000.000 ml);Glucose (5.000 g);Yeast extract(20.000 g);Tryptone (30.000 g);Cysteine hydrochloride (0.500 g);Hemin solution - M00149(25.000 ml)
1563	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
121321	CIP Medium 187	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
1563	positive	growth	37
34564	positive	growth	37
46403	positive	growth	37
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
1563	anaerobe
46403	anaerobe
125438	anaerobe	96.884
125439	anaerobe	99.8

Spore formation

@ref	Spore formation	Confidence
125439		96.3

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68381	40585 ChEBI	alpha-cyclodextrin	-	builds acid from	from API rID32STR
68381	29016 ChEBI	arginine	-	hydrolysis	from API rID32STR
68381	18333 ChEBI	D-arabitol	-	builds acid from	from API rID32STR
68381	16899 ChEBI	D-mannitol	-	builds acid from	from API rID32STR
68380	16024 ChEBI	D-mannose	-	fermentation	from API rID32A
68381	16988 ChEBI	D-ribose	-	builds acid from	from API rID32STR
68381	16443 ChEBI	D-tagatose	-	builds acid from	from API rID32STR
68381	28087 ChEBI	glycogen	-	builds acid from	from API rID32STR
68381	606565 ChEBI	hippurate	-	hydrolysis	from API rID32STR
68381	30849 ChEBI	L-arabinose	-	builds acid from	from API rID32STR
68380	29985 ChEBI	L-glutamate	-	degradation	from API rID32A
68381	17716 ChEBI	lactose	+	builds acid from	from API rID32STR
68381	17306 ChEBI	maltose	+	builds acid from	from API rID32STR
68381	6731 ChEBI	melezitose	-	builds acid from	from API rID32STR
68381	28053 ChEBI	melibiose	-	builds acid from	from API rID32STR
68381	320055 ChEBI	methyl beta-D-glucopyranoside	-	builds acid from	from API rID32STR
68380	17632 ChEBI	nitrate	-	reduction	from API rID32A
68381	27941 ChEBI	pullulan	+	builds acid from	from API rID32STR
68381	16634 ChEBI	raffinose	-	builds acid from	from API rID32STR
68380	16634 ChEBI	raffinose	-	fermentation	from API rID32A
68381	30911 ChEBI	sorbitol	-	builds acid from	from API rID32STR
68381	17992 ChEBI	sucrose	+	builds acid from	from API rID32STR
68381	27082 ChEBI	trehalose	-	builds acid from	from API rID32STR
68380	27897 ChEBI	tryptophan	-	energy source	from API rID32A
68381	16199 ChEBI	urea	-	hydrolysis	from API rID32STR
68380	16199 ChEBI	urea	-	hydrolysis	from API rID32A

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68381	15688 ChEBI	acetoin		from API rID32STR
68380	35581 ChEBI	indole		from API rID32A

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68381	15688 ChEBI	acetoin	-		from API rID32STR
68380	35581 ChEBI	indole		-	from API rID32A

Enzymes

@ref	Value	Activity	Ec
68380	alanine arylamidase	-	3.4.11.2	from API rID32A
68381	Alanyl-Phenylalanyl-Proline arylamidase	+		from API rID32STR
68381	alkaline phosphatase	+	3.1.3.1	from API rID32STR
68380	alkaline phosphatase	-	3.1.3.1	from API rID32A
68380	alpha-arabinosidase	-	3.2.1.55	from API rID32A
68380	alpha-fucosidase	-	3.2.1.51	from API rID32A
68381	alpha-galactosidase	-	3.2.1.22	from API rID32STR
68380	alpha-galactosidase	-	3.2.1.22	from API rID32A
68380	alpha-glucosidase	-	3.2.1.20	from API rID32A
68381	arginine dihydrolase	-	3.5.3.6	from API rID32STR
68381	beta-galactosidase	-	3.2.1.23	from API rID32STR
68380	beta-galactosidase	-	3.2.1.23	from API rID32A
68380	beta-Galactosidase 6-phosphate	-		from API rID32A
68381	beta-glucosidase	-	3.2.1.21	from API rID32STR
68380	beta-glucosidase	-	3.2.1.21	from API rID32A
68381	beta-glucuronidase	-	3.2.1.31	from API rID32STR
68380	beta-glucuronidase	-	3.2.1.31	from API rID32A
68381	beta-mannosidase	-	3.2.1.25	from API rID32STR
68380	glutamate decarboxylase	-	4.1.1.15	from API rID32A
68380	glutamyl-glutamate arylamidase	-		from API rID32A
68380	glycin arylamidase	-		from API rID32A
68381	glycyl tryptophan arylamidase	+		from API rID32STR
68380	histidine arylamidase	-		from API rID32A
68380	L-arginine arylamidase	-		from API rID32A
68380	leucyl glycin arylamidase	-	3.4.11.1	from API rID32A
68381	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32STR
68380	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API rID32A
68380	phenylalanine arylamidase	-		from API rID32A
68380	proline-arylamidase	-	3.4.11.5	from API rID32A
68381	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32STR
68380	pyrrolidonyl arylamidase	-	3.4.19.3	from API rID32A
68380	serine arylamidase	-		from API rID32A
68380	tryptophan deaminase	-	4.1.99.1	from API rID32A
68380	tyrosine arylamidase	-		from API rID32A
68381	urease	-	3.5.1.5	from API rID32STR
68380	urease	-	3.5.1.5	from API rID32A

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	adipate degradation	100	2 of 2
66794	CO2 fixation in Crenarchaeota	100	9 of 9
66794	coenzyme A metabolism	100	4 of 4
66794	threonine metabolism	100	10 of 10
66794	teichoic acid biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	palmitate biosynthesis	100	22 of 22
66794	suberin monomers biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ppGpp biosynthesis	100	4 of 4
66794	chorismate metabolism	88.89	8 of 9
66794	propanol degradation	85.71	6 of 7
66794	vitamin B12 metabolism	85.29	29 of 34
66794	NAD metabolism	83.33	15 of 18
66794	peptidoglycan biosynthesis	80	12 of 15
66794	photosynthesis	78.57	11 of 14
66794	serine metabolism	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	vitamin B1 metabolism	76.92	10 of 13
66794	phenylalanine metabolism	76.92	10 of 13
66794	acetate fermentation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	C4 and CAM-carbon fixation	75	6 of 8
66794	sulfopterin metabolism	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	citric acid cycle	71.43	10 of 14
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	glutamate and glutamine metabolism	67.86	19 of 28
66794	octane oxidation	66.67	2 of 3
66794	acetoin degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	formaldehyde oxidation	66.67	2 of 3
66794	alanine metabolism	65.52	19 of 29
66794	purine metabolism	64.89	61 of 94
66794	pyrimidine metabolism	64.44	29 of 45
66794	degradation of sugar alcohols	62.5	10 of 16
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	cysteine metabolism	61.11	11 of 18
66794	hydrogen production	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	heme metabolism	57.14	8 of 14
66794	reductive acetyl coenzyme A pathway	57.14	4 of 7
66794	urea cycle	53.85	7 of 13
66794	glycolysis	52.94	9 of 17
66794	lipid metabolism	51.61	16 of 31
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	ethanol fermentation	50	1 of 2
66794	gluconeogenesis	50	4 of 8
66794	tetrahydrofolate metabolism	50	7 of 14
66794	phenylmercury acetate degradation	50	1 of 2
66794	selenocysteine biosynthesis	50	3 of 6
66794	methionine metabolism	46.15	12 of 26
66794	vitamin B6 metabolism	45.45	5 of 11
66794	tryptophan metabolism	44.74	17 of 38
66794	glutathione metabolism	42.86	6 of 14
66794	tyrosine metabolism	42.86	6 of 14
66794	isoprenoid biosynthesis	42.31	11 of 26
66794	histidine metabolism	41.38	12 of 29
66794	lysine metabolism	40.48	17 of 42
66794	glycine metabolism	40	4 of 10
66794	methylglyoxal degradation	40	2 of 5
66794	arachidonate biosynthesis	40	2 of 5
66794	ketogluconate metabolism	37.5	3 of 8
66794	isoleucine metabolism	37.5	3 of 8
66794	non-pathway related	36.84	14 of 38
66794	pentose phosphate pathway	36.36	4 of 11
66794	oxidative phosphorylation	35.16	32 of 91
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	glycolate and glyoxylate degradation	33.33	2 of 6
66794	valine metabolism	33.33	3 of 9
66794	degradation of hexoses	33.33	6 of 18
66794	sphingosine metabolism	33.33	2 of 6
66794	4-hydroxymandelate degradation	33.33	3 of 9
66794	nitrate assimilation	33.33	3 of 9
66794	d-mannose degradation	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	propionate fermentation	30	3 of 10
66794	arginine metabolism	29.17	7 of 24
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	ascorbate metabolism	27.27	6 of 22
66794	carnitine metabolism	25	2 of 8
66794	lactate fermentation	25	1 of 4
66794	toluene degradation	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	degradation of pentoses	25	7 of 28
66794	vitamin E metabolism	25	1 of 4
66794	CMP-KDO biosynthesis	25	1 of 4
66794	biotin biosynthesis	25	1 of 4
66794	glycogen biosynthesis	25	1 of 4
66794	dTDPLrhamnose biosynthesis	25	2 of 8
66794	leucine metabolism	23.08	3 of 13
66794	sulfate reduction	23.08	3 of 13
66794	molybdenum cofactor biosynthesis	22.22	2 of 9
66794	arachidonic acid metabolism	22.22	4 of 18
66794	lipid A biosynthesis	22.22	2 of 9

Fatty acid profile

Metadata FA analysis

@ref

46403

Fatty acid	Percentage	ECL
C16:0	37.5	16
C18:1 ω7c DMA	9.1	18.282
C14:0	8.1	14
unknown 18.177	7.1	18.177
C18:2 ω6,9c/C18:0 ANTE	6.8	17.724
C17:1 ISO I/C16:0 DMA	6.7	16.481
C18:1 ω7c /12t/9t	5.8	17.824
C18:1 ω9c DMA	3.3	18.226
C16:1 ω7c	2.9	15.819
C18:1 ω9c	2.6	17.769
Unidentified	2.2	16.29
C17:1 ω7c	1.9	16.818
C17:0 anteiso	1.7	16.722
C18:0	1.6	18
C16:1 ω9c	1.5	15.774
C16:1 ω9c DMA	1.3	16.242

API rID32A

@ref	URE	ADH (Arg)	alpha GAL	beta GAL	beta-Galactosidase 6-phosphatebeta GP	alpha GLU	beta GLU	alpha ARA	beta GUR	beta-N-Acetyl-beta-glucosaminidasebeta NAG	MNE	RAF	GDC	alpha FUC	Reduction of nitrateNIT	IND	PAL	L-arginine arylamidaseArgA	ProA	LGA	Phenylalanine arylamidasePheA	Leucine arylamidaseLeuA	PyrA	Tyrosine arylamidaseTyrA	Alanine arylamidaseAlaA	Glycin arylamidaseGlyA	Histidine arylamidaseHisA	Glutamyl-glutamate arylamidaseGGA	Serine arylamidaseSerA
1563	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
1563	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-
1563	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	+/-	-	-	-	-	-	-	-
46403	-	+	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-

API rID32STR

@ref	ADH (Arg)	beta GLU	beta GAR	beta GUR	alpha GAL	PAL	RIB	MAN	SOR	LAC	TRE	RAF	SAC	LARA	DARL	Acid from alpha-cyclodextrinCDEX	Acetoin production (Voges Proskauer test)VP	Alanyl-Phenylalanyl-Proline arylamidaseAPPA	beta GAL	Pyrrolidonyl arylamidasePyrA	N-Acetyl-glucosaminidasebeta NAG	Glycyl-tryptophan arylamidaseGTA	HIP	GLYG	PUL	MAL	MEL	MLZ	Acidification of methyl beta-D-glucopyranosideMbeta DG	TAG	beta MAN	URE
46403	-	-	+	-	-	+	-	-	-	+	-	-	+	-	-	-	-	+	-	-	-	+	-	-	+	+	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host Body-Site	#Oral cavity and airways	#Mouth
#Host Body-Site	#Oral cavity and airways	#Gingiva

Isolation

@ref	Sample type	Isolation date
1563	subgingival region of mouth
46403	Human subgingival region
67770	Subgingival area associated with periodontitis
121321	Human, Subgingival region of mouth	1978

Taxonmaps

69479

Global distribution of 16S sequence NR_118781 (>99% sequence identity) for [Eubacterium] nodatum subclade from Microbeatlas

Aquatic Samples	950
Soil Samples	328
Animal Samples	15984
Plant Samples	141
Total Samples	17403

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1563	2	Risk group (German classification) According to TRBA 466
121321	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	EnATCC33099v1.0 assembly for Eubacterium nodatum ATCC 33099	contig	GCA_000510425	1161902.3	2558860175	1161902	45.25

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Eubacterium nodatum 16S ribosomal RNA subunit, partial sequence	U13041	1351	1161902
20218	E.nodatum (ATCC 33099) gene for ribosomal RNA	Z36274	1406	1161902
1563	Eubacterium nodatum ATCC 33099 16S ribosomal RNA, partial sequence	NR_118781	1351	1161902

GC content

@ref	GC-content (mol%)	Method
1563	38.0
67770	38	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Eubacterium nodatum ATCC 33099
NCBI: GCA_000510425

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	96.30	no
125439	motility	BacteriaNetⓘ	yes	84.50	no
125439	gram_stain	BacteriaNetⓘ	positive	67.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Eubacterium nodatum ATCC 33099
PATRIC: 1161902.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	63.88	no
125438	anaerobic	anaerobicⓘ	yes	96.88	yes
125438	spore-forming	spore-formingⓘ	no	68.33	no
125438	aerobic	aerobicⓘ	no	99.24	yes
125438	thermophilic	thermophileⓘ	no	86.53	yes
125438	flagellated	motile2+ⓘ	no	87.97	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Evaluation of microbiota associated with Herpesviruses in active sites of generalized aggressive periodontitis.	Passariello C, Gigola P, Testarelli L, Puttini M, Schippa S, Petti S.	Ann Stomatol (Roma)	10.11138/ads/2017.8.2.071	2017
	Host-specific effects of Eubacterium species on Rg3-mediated modulation of osteosarcopenia in a genetically diverse mouse population.	Hong S, Nguyen BN, Min H, Youn HY, Choi S, Hitayezu E, Cha KH, Park YT, Lee CG, Yoo G, Kim M.	Microbiome	10.1186/s40168-024-01971-1	2024
	Antimicrobial Activity of Methylene Blue Associated with Photodynamic Therapy: In Vitro Study in Multi-Species Oral Biofilm.	Bueno-Silva B, Parma-Garcia J, Frigo L, Suarez LJ, Macedo TT, Uyeda FH, Melo MARDC, Sacco R, Mourao CF, Feres M, Shibli JA, Figueiredo LC.	Pathogens	10.3390/pathogens13040342	2024
	Lactobacillus acidophilus impairs the establishment of pathogens in a subgingival multispecies biofilm.	Bueno MR, Dudu-Silva G, Macedo TT, Gomes APAP, Rodrigues Oliveira Braga A, Aguiar Silva LD, Bueno-Silva B.	Front Dent Med	10.3389/fdmed.2023.1212773	2023
	Evaluation of the Microbial Profile on the Polydioxanone Membrane and the Collagen Membrane Exposed to Multi-Species Subgingival Biofilm: An In Vitro Study.	Cintra Moreira MV, Figueiredo LC, da Cunha Melo MAR, Uyeda FH, da Silva LDA, Macedo TT, Sacco R, Mourao CF, Shibli JA, Bueno-Silva B.	Membranes (Basel)	10.3390/membranes13120907	2023
Pathogenicity	Antibacterial Activity of a Bioactive Tooth-Coating Material Containing Surface Pre-Reacted Glass in a Complex Multispecies Subgingival Biofilm.	Tanaka CJ, Rodrigues JA, Pingueiro JMS, Macedo TT, Feres M, Shibli JA, Bueno-Silva B.	Pharmaceutics	10.3390/pharmaceutics15061727	2023
	Differential analysis of culturable and unculturable subgingival target microorganisms according to the stages of periodontitis.	Lafaurie GI, Castillo DM, Iniesta M, Sanz M, Gomez LA, Castillo Y, Pianeta R, Delgadillo NA, Neuta Y, Diaz-Baez D, Herrera D.	Clin Oral Investig	10.1007/s00784-023-04907-5	2023
Phylogeny	Microbial Communities in the Extraradicular and Intraradicular Infections Associated With Persistent Apical Periodontitis.	Sun X, Yang Z, Nie Y, Hou B.	Front Cell Infect Microbiol	10.3389/fcimb.2021.798367	2021
	Propolis, Aloe Vera, Green Tea, Cranberry, Calendula, Myrrha and Salvia Properties against Periodontal Microorganisms.	Figueiredo LC, Freitas Figueiredo N, da Cruz DF, Baccelli GT, Sarachini GE, Bueno MR, Feres M, Bueno-Silva B.	Microorganisms	10.3390/microorganisms10112172	2022
	Brazilian Red Propolis Is as Effective as Amoxicillin in Controlling Red-Complex of Multispecies Subgingival Mature Biofilm In Vitro.	de Figueiredo KA, da Silva HDP, Miranda SLF, Goncalves FJDS, de Sousa AP, de Figueiredo LC, Feres M, Bueno-Silva B.	Antibiotics (Basel)	10.3390/antibiotics9080432	2020
	Metabolic activity of hydro-carbon-oxo-borate on a multispecies subgingival periodontal biofilm: a short communication.	Shibli JA, Rocha TF, Coelho F, de Oliveira Capote TS, Saska S, Melo MA, Pingueiro JMS, de Faveri M, Bueno-Silva B.	Clin Oral Investig	10.1007/s00784-021-03900-0	2021
Pathogenicity	Effect of smokeless tobacco products on human oral bacteria growth and viability.	Liu M, Jin J, Pan H, Feng J, Cerniglia CE, Yang M, Chen H.	Anaerobe	10.1016/j.anaerobe.2016.10.006	2016
	TLR4, NOD1 and NOD2 mediate immune recognition of putative newly identified periodontal pathogens.	Marchesan J, Jiao Y, Schaff RA, Hao J, Morelli T, Kinney JS, Gerow E, Sheridan R, Rodrigues V, Paster BJ, Inohara N, Giannobile WV.	Mol Oral Microbiol	10.1111/omi.12116	2016
	Associations between Periodontal Microbiota and Death Rates.	Chiu CJ, Chang ML, Taylor A.	Sci Rep	10.1038/srep35428	2016
	Purification and Anti-pathogenic Properties of Immunoglobulin Concentrates from Porcine Blood.	Jung TH, Choi JH, Koh KC, Jeon WM, Han KS.	Korean J Food Sci Anim Resour	10.5851/kosfa.2017.37.5.743	2017
Pathogenicity	In vitro-activity of oily calcium hydroxide suspension on microorganisms as well as on human alveolar osteoblasts and periodontal ligament fibroblasts.	Eick S, Strugar T, Miron RJ, Sculean A.	BMC Oral Health	10.1186/1472-6831-14-9	2014
Enzymology	Detection of unculturable bacteria in periodontal health and disease by PCR.	Harper-Owen R, Dymock D, Booth V, Weightman AJ, Wade WG.	J Clin Microbiol	10.1128/jcm.37.5.1469-1473.1999	1999
	Microbial Biofilm Decontamination on Dental Implant Surfaces: A Mini Review.	Dhaliwal JS, Abd Rahman NA, Ming LC, Dhaliwal SKS, Knights J, Albuquerque Junior RF.	Front Cell Infect Microbiol	10.3389/fcimb.2021.736186	2021
	Effects of azithromycin, metronidazole, amoxicillin, and metronidazole plus amoxicillin on an in vitro polymicrobial subgingival biofilm model.	Soares GM, Teles F, Starr JR, Feres M, Patel M, Martin L, Teles R.	Antimicrob Agents Chemother	10.1128/aac.04974-14	2015
	A Biofilm Pocket Model to Evaluate Different Non-Surgical Periodontal Treatment Modalities in Terms of Biofilm Removal and Reformation, Surface Alterations and Attachment of Periodontal Ligament Fibroblasts.	Hagi TT, Klemensberger S, Bereiter R, Nietzsche S, Cosgarea R, Flury S, Lussi A, Sculean A, Eick S.	PLoS One	10.1371/journal.pone.0131056	2015
Enzymology	Abilities of the mCP Agar method and CRENAME alpha toxin-specific real-time PCR assay to detect Clostridium perfringens spores in drinking water.	Maheux AF, Berube E, Boudreau DK, Villeger R, Cantin P, Boissinot M, Bissonnette L, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02791-13	2013
Metabolism	Long-term high-grain diet altered the ruminal pH, fermentation, and composition and functions of the rumen bacterial community, leading to enhanced lactic acid production in Japanese Black beef cattle during fattening.	Ogata T, Makino H, Ishizuka N, Iwamoto E, Masaki T, Ikuta K, Kim YH, Sato S.	PLoS One	10.1371/journal.pone.0225448	2019
	Growth of Porphyromonas gingivalis, Treponema denticola, T. pectinovorum, T. socranskii, and T. vincentii in a chemically defined medium.	Wyss C.	J Clin Microbiol	10.1128/jcm.30.9.2225-2229.1992	1992
	Multifactorial genetic control and magnesium levels govern the production of a Streptomyces antibiotic with unusual cell density dependence.	Hindra, Elliot MA.	mSystems	10.1128/msystems.01368-23	2024
Enzymology	Molecular cloning and comparative sequence analyses of rRNA operons in Streptomyces nodosus ATCC 14899.	Yap WH, Wang Y.	Gene	10.1016/s0378-1119(99)00112-2	1999
	Bile acids enhance fat metabolism and skeletal muscle development in Zhijiang duck by modulating gut microbiota	Ma Y, Zhang Z, Deng W, Jiang G, Xie D, Cao A.	Poultry Science.		2025
	Oral Bacterial and Fungal Microbiome and Subsequent Risk for Pancreatic Cancer.	Meng Y, Wu F, Kwak S, Wang C, Usyk M, Freedman ND, Huang WY, Um CY, Gonda TA, Oberstein PE, Li H, Hayes RB, Ahn J.	JAMA Oncol	10.1001/jamaoncol.2025.3377	2025
Genetics	Causal Relationships Between Specific Gut Microbiota Taxa, Plasma Metabolites, and Cerebral Small Vessel Disease Risk: A Mendelian Randomization Analysis.	Zhao X, Li Y, Lu T, Yan H, Xue C, Li J.	Curr Pharm Biotechnol	10.2174/0113892010373952250510105002	2025
	Inflammatory cytokines mediate the gut microbiota-EGPA subtype link: a Mendelian randomization study.	Liu Q, Luo Z, Wu Y, Gan Q, Zhang N, Wu K.	Clin Rheumatol	10.1007/s10067-025-07526-5	2025
Pathogenicity	Bifidobacterium longum Ameliorates Intestinal Inflammation and Metabolic Biomarkers in Mice Fed a High-Fat Diet with Gliadin by Indoleacrylic Acid.	Wang N, Pei Z, Wang H, Zhao J, Lu W.	Probiotics Antimicrob Proteins	10.1007/s12602-025-10486-6	2025
	Submucosal Microbiome Profiles in Paired and Unpaired Samples From Healthy and Peri-Implantitis Dental Implants.	Tocarruncho OI, Neuta Y, Lesmes Y, Castillo DM, Leal S, Chambrone L, Lafaurie GI.	Clin Implant Dent Relat Res	10.1111/cid.13423	2025
	Dietary supplementation with novel selenium-enriched Pichia kudriavzevii regulates gut microbiota and host metabolism in mice.	Wang H, Shi D, Chen Y, Wang Z, Yuan Y, Yue T.	Food Funct	10.1039/d4fo03633f	2024
	Exploring the Relationship Between Sporadic Creutzfeldt-Jakob Disease and Gut Microbiota Through a Mendelian Randomization Study.	Su T, Lang Y, Ren J, Yin X, Zhang W, Cui L.	Mol Neurobiol	10.1007/s12035-024-04376-1	2025
	Brain abscess caused by Porphyromonas gingivalis and Eubacterium nodatum mimicking acute stroke.	Fernandez Vecilla D, Roche Matheus MP, Urrutikoetxea Gutierrez M, Iglesias Hidalgo G, Aspichueta Vivanco C, Diaz de Tuesta Del Arco JL.	Anaerobe	10.1016/j.anaerobe.2023.102801	2023
Pathogenicity	What is the link between the dietary inflammatory index and the gut microbiome? A systematic review.	Mirhosseini SM, Mahdavi A, Yarmohammadi H, Razavi A, Rezaei M, Soltanipur M, Karimi Nemch M, Jafari Naeini S, Siadat SD.	Eur J Nutr	10.1007/s00394-024-03470-3	2024
Genetics	Causal relationship between gut microbiota and malignant lymphoma: a two-way two-sample mendelian randomization study.	Laoguo S, Tang J, Xu X, Huang X, Jiang Y, Mo N, Duan S, Wu W, Li H, Taylor J, Ma J.	Transl Cancer Res	10.21037/tcr-2025-303	2025
	Lack of genetic correlation and causal association between specific gut microbiota and osteoporosis.	Chen D, Zhu T, Liu C, Zhang Y, Wu Y, Xiong Z, Sun J, Zhang W.	Medicine (Baltimore)	10.1097/md.0000000000045031	2025
Genetics	Predicting the potential deterioration of Barrett's esophagus based on gut microbiota: a Mendelian randomization analysis.	Li C, Shu P, Shi T, Chen Y, Mei P, Zhang Y, Wang Y, Du X, Wang J, Zhang Y, Liu B, Sheng Z, Chan S, Dan Z.	Mamm Genome	10.1007/s00335-024-10042-7	2024
	New putative periodontopathogens and periodontal health-associated species: A systematic review and meta-analysis.	Antezack A, Etchecopar-Etchart D, La Scola B, Monnet-Corti V.	J Periodontal Res	10.1111/jre.13173	2023
	Gut microbiota alterations modulate high-fat diet-induced precocious puberty.	Wu N, Jiang X, Wang Y, Zhang M, Yue M, Chen F, Wu W, Liu Y, Wang Q, Zhang L.	Microbiol Spectr	10.1128/spectrum.03264-24	2025
	Association between the severity of gingival inflammation and microbial findings in children.	Tankova H.	Front Dent Med	10.3389/fdmed.2025.1638435	2025
	Fusobacterium nucleatum and Treponema denticola are robust biomarkers for gingivitis and periodontitis in small dogs.	Kwon D, Bae K, Jang K, Jo HM, Kang SS, Byun J, Kim SE.	Front Vet Sci	10.3389/fvets.2024.1515521	2024
Metabolism	Bile acids enhance fat metabolism and skeletal muscle development in Zhijiang duck by modulating gut microbiota.	Chen L, Zhang Z, Deng W, Jiang G, Xie D, Cao A.	Poult Sci	10.1016/j.psj.2025.105319	2025
	Influence of CTG repeats from the human DM1 locus on murine gut microbiota.	Mahdavi M, Kim TY, Prevost K, Balthazar P, Gagne-Ouellet V, Hus IF, Duchesne E, Harvey S, Gagnon C, Laforest-Lapointe I, Dumont NA, Masse E.	Comput Struct Biotechnol J	10.1016/j.csbj.2025.02.016	2025
Pathogenicity	Subgingival Microbiome Profiles in Bulgarian Children Aged 10-14 with Gingival Inflammation and Healthy Periodontium: A Targeted PCR Study.	Tankova H, Mitova N.	Microorganisms	10.3390/microorganisms13071656	2025
	Causal relationship between gut microbiota and constipation: a bidirectional Mendelian randomization study.	Feng C, Gao G, Wu K, Weng X.	Front Microbiol	10.3389/fmicb.2024.1438778	2024
	The Impact of Orthodontic Adhesives on the Subgingival Microbiota During Early Fixed Appliance Therapy: A Pilot Study.	Martha K, Kis EE, Muresan IE, Ioanovici AC.	Medicina (Kaunas)	10.3390/medicina61050858	2025
	Causality investigation among gut microbiota, immune cells, and prostate diseases: a Mendelian randomization study.	Yue SY, Li WY, Xu S, Bai XX, Xu WL, Wang X, Ding HK, Chen J, Du HX, Xu LF, Niu D, Liang CZ.	Front Microbiol	10.3389/fmicb.2024.1445304	2024
Genetics	Signature of oral microbial dysbiosis in different periodontitis risk levels.	Xu Y, Liu Y, Leng Y, Qian J, Yang Q, Zhu J, Li G, Peng Y.	Appl Microbiol Biotechnol	10.1007/s00253-025-13574-3	2025
	SmartGel OV: A Natural Origanum vulgare-Based Adjunct for Periodontitis with Clinical and Microbiological Evaluation	Radu C, Radu C, Zaha D.	Medicina (Kaunas)		2025
	Detecting Oral Bacteria in Abdominal Aorta Atherosclerotic Plaques-How Far Can They Go?	Subaric A, Arsic Z, Mihailovic D, Marjanovic D, Lazic V, Matvijenko M, Savic A, Stevanovic M, Staletovic D.	Medicina (Kaunas)	10.3390/medicina61111976	2025
	Improving precision management of anxiety disorders: a Mendelian randomization study targeting specific gut microbiota and associated metabolites.	Xu MM, Qiu WH, Ma QY, Yu ZY, Yang WM, Hu TN, Guo Y, Chen XY.	Front Microbiol	10.3389/fmicb.2024.1380912	2024
	Oral Microbial Changes in Oral Squamous Cell Carcinoma: Focus on Treponema denticola, Lactobacillus casei, and Candida albicans	Lee Y, Jung J, Hong J.	Medicina (Kaunas)		2024
	Evaluation of oral hygiene and gingival parameters in pediatric nephrotic syndrome within an interdisciplinary care model.	Piekoszewska-Zietek P, Panczyk-Tomaszewska M, Olczak-Kowalczyk D.	Sci Rep	10.1038/s41598-025-06687-2	2025
	Association of Gut Microbiota with Age-Related Macular Degeneration and Glaucoma: A Bidirectional Mendelian Randomization Study.	Li C, Lu P.	Nutrients	10.3390/nu15214646	2023
	Effectiveness of Glycyrrhiza uralensis extract on periodontal pathogens: a randomized controlled clinical trial.	Kim YR, Nam SH.	BMC Oral Health	10.1186/s12903-025-06172-2	2025
	The causal relationship between gut microbiota and lower extremity deep vein thrombosis combined with pulmonary embolism.	Xu Q, Fang J, Wang Y, Lang D, Xu B.	Front Microbiol	10.3389/fmicb.2024.1301737	2024
Genetics	Association between gut microbiota and diabetic microvascular complications: a two-sample Mendelian randomization study.	Zhou P, Hao Z, Chen Y, Zhang Z, Xu W, Yu J.	Front Endocrinol (Lausanne)	10.3389/fendo.2024.1364280	2024
	Causal association between gut microbiota composition and the risk of atrial fibrillation.	Tan J, Wang J, Yang Y, Zhu J, Wang L, Xu W, Lyu S, Wu S, Wang J, Zhang H.	J Transl Int Med	10.1515/jtim-2025-0031	2025
	Proteomics of Periodontitis-Associated Bacteria and Its Link to Oral Squamous Cell Carcinoma: A Contemporaneous Review.	Yeong S, Cheah C, Tilakaratne A, Tilakaratne WM.	Int Dent J	10.1016/j.identj.2025.103980	2025
	Causal links between gut microbiomes, cytokines and risk of different subtypes of epilepsy: a Mendelian randomization study.	Qiu Y, Song B, Xie M, Tao Y, Yin Z, Wang M, Ma C, Chen Z, Wang Z.	Front Neurosci	10.3389/fnins.2024.1397430	2024
	Oral Microbiome and Subsequent Risk of Head and Neck Squamous Cell Cancer.	Kwak S, Wang C, Usyk M, Wu F, Freedman ND, Huang WY, McCullough ML, Um CY, Shrubsole MJ, Cai Q, Li H, Ahn J, Hayes RB.	JAMA Oncol	10.1001/jamaoncol.2024.4006	2024
Phylogeny	Comparison of Long-Term Oral Bacterial Flora Before and After Orthognathic Surgery in Surgical Orthodontic Treatment.	Matsumoto R, Takahashi M, Hosomichi K, Okuwaki S, Koizumi S, Hikita Y, Hatanaka R, Yamaguchi T.	Dent J (Basel)	10.3390/dj13100458	2025
	To analyze the relationship between gut microbiota, metabolites and migraine: a two-sample Mendelian randomization study.	Qu K, Li MX, Gan L, Cui ZT, Li JJ, Yang R, Dong M.	Front Microbiol	10.3389/fmicb.2024.1325047	2024
	Peri-Implantitis-Associated Microbiota before and after Peri-Implantitis Treatment, the Biofilm "Competitive Balancing" Effect: A Systematic Review of Randomized Controlled Trials.	Di Spirito F, Pisano M, Di Palo MP, Franci G, Rupe A, Fiorino A, Rengo C.	Microorganisms	10.3390/microorganisms12101965	2024
	Differential Patterns of Gut and Oral Microbiomes in Hispanic Individuals with Cognitive Impairment.	Wadop YN, Vasquez EL, Mathews JJ, Muhammad JAS, Pirela Mavarez R, Satizabal CL, Gonzales MM, Tanner J, Maestre G, Fonteh AN, Seshadri S, Kautz TF, Fongang B.	Microorganisms	10.3390/microorganisms13102350	2025
	Proliferative verrucous leukoplakia is associated with aggressive periodontal pathogens: a comparative study with oral lichen planus and chronic periodontitis cases.	Liska J, Liskova V, Molnarova N, Topolcan O, Posta P, Hauer L.	Clin Oral Investig	10.1007/s00784-025-06525-9	2025
	Subgingival microbiota and genetic factors (A-2570G, A896G, and C1196T TLR4 polymorphisms) as periodontal disease determinants.	Castro-Casarrubias R, Castro-Alarcon N, Reyes-Fernandez S, Salazar-Hernandez E, Vazquez-Villamar M, Romero-Castro NS.	Front Dent Med	10.3389/fdmed.2025.1576429	2025
	Cordyceps militaris extract and cordycepin ameliorate LPS-challenged colonic damage in piglets by modulating the microbiota and metabolite profiles.	Xiong S, Wan F, Jiang J, Liu Y, Hang Y, Xue H, Lu Y, Su Y.	Front Immunol	10.3389/fimmu.2025.1530098	2025
Pathogenicity	Relationship between dietary inflammatory index and risk of gestational diabetes mellitus: a systematic review.	Chagas LAD, de Sousa RML, da Silva AVADC, Silva-Neto LGR, de Almeida-Pititto B, Teixeira LKA, Araujo Junior E, Mattar R.	Rev Bras Ginecol Obstet	10.61622/rbgo/2025rbgo34	2025
	Impact of Pericoronary Microbiota Composition on Course of Recovery after Third Molar Alveotomy.	Todoric Z, Milosevic M, Marekovic I, Biocic J.	Life (Basel)	10.3390/life14050580	2024
	Association between clusters of antibodies against periodontal microorganisms and Alzheimer disease mortality: Evidence from a nationally representative survey in the USA.	Merchant AT, Zhao L, Bawa EM, Yi F, Vidanapathirana NP, Lohman M, Zhang J.	J Periodontol	10.1002/jper.23-0006	2024
	Correlation between HbA1c Levels and Periodontal Bacterial Load in Diabetic Patients with Fixed Retainers.	Maris M, Bucur SM, Maris M, Pacurar M, Chibelean M, Nenovici D, Earar K.	Curr Health Sci J	10.12865/chsj.50.04.11	2024
	An Anaerobic Culture Study to Assess the Prevalence of Porphyromonas gingivalis in Periodontal Disease Incidences Among Adults.	Balan DK, John J, Ahamed S, Syam N, Sudhakaran G, M L, Ali H.	Cureus	10.7759/cureus.65023	2024
	Prevalence and antibiotic susceptibility trends of periodontal pathogens in the subgingival microbiota of German periodontitis patients: A retrospective surveillance study.	Jepsen K, Falk W, Brune F, Fimmers R, Jepsen S, Bekeredjian-Ding I.	J Clin Periodontol	10.1111/jcpe.13468	2021
	Clinical Study and Microbiological Analysis of Periodontopathogenic Microflora Analyzed among Children and Adolescents with Cardiovascular Diseases Compared to Group with Good General Status.	Chipirliu O, Craciun MV, Matei MN.	Pediatr Rep	10.3390/pediatric16020041	2024
	The clinical effect of sodium hypochlorite oral rinse on peri-implantitis lesion: A pilot study.	Lee W, Park JB.	Heliyon	10.1016/j.heliyon.2023.e15859	2023
	Changes in subgingival microflora in patients with fixed orthodontic appliances.	Arbutina A, Radman IK, Umicevic-Davidovic M, Arapovic-Savic M, Deri A, Arbutina R, Marin S, Josipovic R, Trtic N.	Dental Press J Orthod	10.1590/2177-6709.30.1.e2524154.oar	2025
	Associations between gut microbiota and three prostate diseases: a bidirectional two-sample Mendelian randomization study.	Liu X, Dong Q.	Sci Rep	10.1038/s41598-024-54293-5	2024
	Study of Periodontal Bacteria in Diabetic Wistar Rats: Assessing the Anti-Inflammatory Effects of Carvacrol and Magnolol Hydrogels.	Potra Cicalau GI, Marcu OA, Ghitea TC, Ciavoi G, Iurcov RC, Beiusanu C, Trifan DF, Vicas LG, Ganea M.	Biomedicines	10.3390/biomedicines12071445	2024
	Molecular Microbiological Characteristics of Gingival Pockets in the Periodontal Diseases of Dogs.	Polkowska I, Tymczyna-Borowicz B, Golynska M, Nowicka B.	J Vet Res	10.2478/jvetres-2023-0005	2023
	Inoculum microbiome composition impacts fatty acid product profile from cellulosic feedstock.	Rico JL, Reardon KF, De Long SK.	Bioresour Technol	10.1016/j.biortech.2020.124532	2021
	One Year Follow-Up of a 4-Year-Old Caucasian Girl Diagnosed with Stage IV Grade C Localized Periodontitis.	Moga RA, Olteanu CD.	J Clin Med	10.3390/jcm13164878	2024
	Oral health in adolescents: periodontal inflammatory biomarkers during orthodontic clear aligner therapy.	Kredig C, Peuckert E, Schmidtmann I, Drechsler T, Erbe C.	Clin Oral Investig	10.1007/s00784-025-06212-9	2025
	Genetically predicted causal effects of gut microbiota on spinal pain: a two-sample Mendelian randomization analysis.	Hong S, Chen L, Zhou X, Huang Y, Tian Y, Hu H, Yu B, Wu H, Yang C, Lv Z, Lv L.	Front Microbiol	10.3389/fmicb.2024.1357303	2024
	Effects of protein concentration and beta-adrenergic agonists on ruminal bacterial communities in finishing beef heifers.	Pfau AP, Henniger MT, Samuelson KL, Hales KE, Loest CA, Hubbert ME, Lindholm-Perry AK, Egert-McLean AM, Mason KM, Shepherd EA, Voy BH, Myer PR.	PLoS One	10.1371/journal.pone.0296407	2024
	Gender-specific microbial signatures in saliva: Unveiling the association between the oral microbiome and the pathogenesis of glioma.	Qin H, Liu J, Li YY, Xu YL, Yan YF.	Heliyon	10.1016/j.heliyon.2024.e37284	2024
	Gut Microbiome and Atherosclerosis: A Mendelian Randomization Study.	Li Y, Chen Y, Li Z, Li Y, Chen Y, Tang L.	Rev Cardiovasc Med	10.31083/j.rcm2502041	2024
Phylogeny	Modulation of Swine Gut Microbiota by Phytogenic Blends and High Concentrations of Casein in a Validated Swine Large Intestinal In Vitro Model.	Popov IV, Einhardt Manzke N, Sost MM, Verhoeven J, Verbruggen S, Chebotareva IP, Ermakov AM, Venema K.	Vet Sci	10.3390/vetsci10120677	2023
	The Composition of Subgingival Microbiome in Hidradenitis Suppurativa and Periodontitis Patients.	Jastrzab B, Pasnik-Chwalik B, Debska-Lasut K, Konopka T, Krajewski PK, Szepietowski JC, Matusiak L.	Pathogens	10.3390/pathogens12030377	2023
	Antimicrobial Efficacy of Aloe Vera, Chlorhexidine, Hyaluronic Acid, and Diode Laser Against Periodontopathogenic Bacteria: A Mixed-Methods Study.	Zadode A, Shiggaon L, Ghagre S, Mane VM, Chintale SB, Awaghad SS, Patil A.	Cureus	10.7759/cureus.88283	2025
	Antidepressant drugs promote the spread of broad-host-range plasmid in mouse and human gut microbiota	Ding P, Lu J, Lei T, Guo Y, Zhu B, Zhao Y, Wang Y, Engelstadter J, Schembri M, Guo J.	Gut microbes		2025
	Antimicrobial effects of a pulsed electromagnetic field: an in vitro polymicrobial periodontal subgingival biofilm model.	Faveri M, Miquelleto DEC, Bueno-Silva B, Pingueiro JMS, Figueiredo LC, Dolkart O, Yakobson E, Barak S, Feres M, Shibli JA.	Biofouling	10.1080/08927014.2020.1825694	2020
	Human calculus adhesive-induced periodontitis model recapitulating human periodontitis microbiota in rats.	You Y, Wu HL, Chen DY, Yu SY, Xu Y, Tang Y, Sun HL, Huang C.	BMC Oral Health	10.1186/s12903-025-06398-0	2025
	Resolution of Nasal Sinus Tract after Endodontic Therapy: A Case Report with Microbial Analysis.	Cardoso FGR, Valera MC, Khoury RD, Martinho FC.	J Endod	10.1016/j.joen.2020.10.004	2021
	Next-Generation Dental Materials: Exploring Bacterial Biofilm Formation on 3D-Printable Resin-Based Composites.	Koji Uehara E, Castro de Lima G, Sardi JCO, de Figueiredo LC, Shibli JA, Asbi T, Haim D, Augusto Rodrigues J.	J Funct Biomater	10.3390/jfb16010012	2025
	The Role of Diet and the Gut Microbiota in Reactive Aggression and Adult ADHD-An Exploratory Analysis.	Jakobi B, Cimetti C, Mulder D, Vlaming P, Franke B, Hoogman M, Arias-Vasquez A.	Nutrients	10.3390/nu16142174	2024
Phylogeny	Preventive effect of Lactobacillus johnsonii YH1136 against uric acid accumulation and renal damages.	Zhang X, Jiang J, Xin J, Sun N, Zhao Z, Gan B, Jiang Y, Gong X, Li H, Ma H, Ni X, Chen Y, Bai Y, Wang H.	Front Microbiol	10.3389/fmicb.2024.1364857	2024
	Relationship of tongue coating microbiome on volatile sulfur compounds in healthy and halitosis adults.	Ye W, Zhang Y, He M, Zhu C, Feng XP.	J Breath Res	10.1088/1752-7163/ab47b4	2019
Metabolism	MXSGD alleviates CsA-induced hypoimmunity lung injury by regulating microflora metabolism.	Ye C, Gao ZH, Bie ZY, Chen KQ, Lu FG, Wei K.	Front Immunol	10.3389/fimmu.2023.1298416	2023
	Gut microbiota's role in glioblastoma risk, with a focus on the mediating role of metabolites.	Yan J, Li B, Luo C.	Front Neurol	10.3389/fneur.2024.1386885	2024
	Oral microbiome of the inner surface of face masks and whole saliva during the COVID-19 pandemic.	Lee YH, Kim H, Heo DW, Ahn IS, Park HK.	Front Oral Health	10.3389/froh.2023.1178020	2023
	Sleep duration associated with altered oral microbiome diversity and composition in the NIH AARP cohort.	Dalton KR, Chang VC, Lee M, Maki K, Saint-Maurice P, Purandare V, Hua X, Wan Y, Dagnall CL, Jones K, Hicks BD, Hutchinson A, Liao LM, Gail MH, Shi J, Sinha R, Abnet CC, London SJ, Vogtmann E.	Sleep Adv	10.1093/sleepadvances/zpaf023	2025
	Fecal microbiota transplantation improves bile acid malabsorption in patients with inflammatory bowel disease: results of microbiota and metabolites from two cohort studies.	Lu G, Zhang S, Wang R, Wu X, Chen Y, Wen Q, Cui B, Zhang F, Li P.	BMC Med	10.1186/s12916-025-04353-y	2025
	Sodium Hypochlorite and Diode Laser in Non-Surgical Treatment of Periodontitis: Clinical and Bacteriological Study with Real Time Polymerase Chain Reaction (PCR).	El Mobadder M, Nammour S, Matys J, Grzech-Lesniak K.	Life (Basel)	10.3390/life12101637	2022
	Metagenomic Next-Generation Sequencing-Assisted Risk Prediction and Stratification of Infections After Kidney Transplantation: A Case Study of COVID-19.	Ye X, Li C, Zhou Z, Yang J, Jiang H, Hu L, Pan H, Wei X, Huang Y, Lin Y, Wang L.	Infect Drug Resist	10.2147/idr.s521111	2025
	A mouthwash formulated with o-cymen-5-ol and zinc chloride specifically targets potential pathogens without impairing the native oral microbiome in healthy individuals.	Pascual J, Mira Otal J, Torrent-Silla D, Porcar M, Vilanova C, Vivancos Cuadras F.	J Oral Microbiol	10.1080/20002297.2023.2185962	2023
Phylogeny	The Herbal Pair Polygonum hydropiper L-Coptis chinensis Franch Attenuate DSS-Induced Ulcerative Colitis by Modulating Metabolism and Intestinal Flora.	Zhu F, Ren C, Zhou K, Huang X, Mei M, Niu H, Ren S.	Food Sci Nutr	10.1002/fsn3.70584	2025
	Mung Bean Starch-Derived Fermented Liquid Alleviates Constipation via 5-HT Modulation and Gut Microbiota Regulation: An In Vivo Study.	Ma T, Zhou M, Zhang X, Zhang R, Wei Y, Liu J.	Foods	10.3390/foods14142483	2025
	A two sample mendelian randomization analysis investigates causal effects between gut microbiome and immune related Vasculitis.	Chen S, Nie R, Wang C, Luan H, Ma X, Gui Y, Zeng X, Yuan H.	Sci Rep	10.1038/s41598-024-68205-0	2024
	Genetic correlations between Alzheimer's disease and gut microbiome genera.	Cammann D, Lu Y, Cummings MJ, Zhang ML, Cue JM, Do J, Ebersole J, Chen X, Oh EC, Cummings JL, Chen J.	Sci Rep	10.1038/s41598-023-31730-5	2023
	Dental hypofunction alters subgingival microorganisms: a pilot study.	Karatas O, Balci Yuce H, Aydemir Turkal H.	Minerva Stomatol	10.23736/s0026-4970.19.04245-6	2019
	Effect of scaling and root planing with and without minocycline HCl microspheres on periodontal pathogens and clinical outcomes: A randomized clinical trial.	Arnett MC, Chanthavisouk P, Costalonga M, Blue CM, Evans MD, Paulson DR.	J Periodontol	10.1002/jper.23-0002	2023
Genetics	Joint Bacterial Traces in the Gut and Oral Cavity of Obesity Patients Provide Evidence for Saliva as a Rich Microbial Biomarker Source.	Rehner J, Gund M, Becker SL, Hannig M, Rupf S, Schattenberg JM, Keller A, The Imagine Consortium, Molano LG, Keller V.	Nutrients	10.3390/nu17223527	2025
Genetics	Causal relationship between gut microbiota and insulin-like growth factor 1: a bidirectional two-sample Mendelian randomization study.	Zheng X, Qian Y, Wang L.	Front Cell Infect Microbiol	10.3389/fcimb.2024.1406132	2024
	Influence of obesity on subgingival microbiota composition in subjects with different periodontal status: a systematic review.	Alarcon-Sanchez MA.	Rev Cient Odontol (Lima)	10.21142/2523-2754-1201-2024-187	2024
	Effects of dietary fiber on Chinese children with functional constipation and targeted modification of gut microbiota and related metabolites.	Xiao P, Song T, Li XL, Xiao YM, Wang RX, Song FF, Li D, Zhang AH, Wang Y, Zhang T.	Front Nutr	10.3389/fnut.2025.1579668	2025
	Association between Gut Microbiota and Digestive System Cancers: A Bidirectional Two-Sample Mendelian Randomization Study.	Xie N, Wang Z, Shu Q, Liang X, Wang J, Wu K, Nie Y, Shi Y, Fan D, Wu J.	Nutrients	10.3390/nu15132937	2023
	Periodontal pathogens and their role in cardiovascular outcome.	Schulz S, Schlitt A, Hofmann B, Schaller HG, Reichert S.	J Clin Periodontol	10.1111/jcpe.13224	2020
	The Spouses of Stroke Patients Have a Similar Oral Microbiome to Their Partners with an Elevated Risk of Stroke.	Wang H, Yang M, Cheng S, Ren Y, Deng Y, Liang J, Lin X, Li J, Yin J, Wu Q.	Microorganisms	10.3390/microorganisms10112288	2022
	A universal oral microbiome-based signature for periodontitis.	Geng M, Li M, Li Y, Zhu J, Sun C, Wang Y, Chen WH.	Imeta	10.1002/imt2.212	2024
Metabolism	Microbial Influences on Calcium-Phosphorus Homeostasis and Metabolic Bone Diseases: A Bidirectional Mendelian Randomisation Study on the Gut-Bone Axis.	Zhou Y, Yang Y, Zhu W, Kourkoumelis N, Wang Y, Chen Y, Hong L, Wang J, Zhu J, Zhu C, Zhang X.	J Cell Mol Med	10.1111/jcmm.70491	2025
Pathogenicity	Correlations Between Amelioration of Rotenone-Induced Parkinson's Symptoms by Amomum tsaoko Flavonoids and Gut Microbiota in Mice.	Liu L, Zhao Y, Yang W, Han L, Mo X, Sheng J, Tian Y, Gao X.	Int J Mol Sci	10.3390/ijms26041676	2025
	Characteristics of Mucosa-Associated Microbiota in Ulcerative Colitis Patients with 5-Aminosalicylic Acid Intolerance.	Matsumoto H, Sasahira M, Go TT, Yo S, Ninomiya T, Osawa M, Handa O, Umegami E, Inoue R, Shiotani A.	Biomedicines	10.3390/biomedicines12092125	2024
	Potential short-term shift in oral microbiota of patients with stage III-IV periodontitis and type 2 diabetes treated by non-surgical periodontal therapy.	Xu X, He L, Huo P, Jin D, Zhu Y, Lu H, Meng H.	J Dent Sci	10.1016/j.jds.2025.01.014	2025
	Combination of Neovestitol and Vestitol Modifies the Profile of Periodontitis-Related Subgingival Multispecies Biofilm	Macedo T, Malavazi L, Vargas G, Goncalves F, Gomes A, Bueno M, Aguiar da Silva L, Figueiredo L, Bueno-Silva B.	Biomedicines		2024
	Comparison of clinical parameters of peri-implantitis and parameters related to tissue macrophage sensitization on TiO₂.	Sahrmann P, Tartsch J, Schmidlin PR.	Clin Oral Investig	10.1007/s00784-024-05880-3	2024
	Assessing the impact of non-protein nitrogen or rumen undegradable protein supplementation on rumen bacterial diversity and ruminal fermentation in grazing steers during the dry season.	Dias AVL, Granja-Salcedo YT, Messana JD, Camargo KDV, Alves KLGC, Machado EVA, Constancio MTL, Reis RA, Berchielli TT.	Front Microbiol	10.3389/fmicb.2025.1670636	2025
Genetics	Subtractive proteomics and molecular docking identify therapeutic targets and drug candidates in drug resistant Klebsiella Michiganensis THO-011	Alanzi A, Alanazi A, Alhazzani K, Abbas M.	Sci Rep		2025
	The Effectiveness of a Bioactive Healing Abutment as a Local Drug Delivery System to Impact Peri-Implant Mucositis: A Prospective Case Series Study.	Wychowanski P, Nowak M, Miskiewicz A, Morawiec T, Wolinski J, Kucharski Z, Passarelli PC, Bodnarenko A, Lopez MA.	Pharmaceutics	10.3390/pharmaceutics15010138	2022
	Exploring the Relationship Between Gut Microbiota and Aortic Stenosis: Role of Inflammatory Proteins, Blood Metabolites, and Immune Cells.	Jing F, Zhou J, Zhang F, Zhao G, Fang F, Pan X.	Int J Med Sci	10.7150/ijms.110392	2025
	Microbiota from Exercise Mice Counteracts High-Fat High-Cholesterol Diet-Induced Cognitive Impairment in C57BL/6 Mice.	Li R, Liu R, Chen L, Wang G, Qin L, Yu Z, Wan Z.	Oxid Med Cell Longev	10.1155/2023/2766250	2023
	Gut microbiota, circulating cytokines and dementia: a Mendelian randomization study.	Ji D, Chen WZ, Zhang L, Zhang ZH, Chen LJ.	J Neuroinflammation	10.1186/s12974-023-02999-0	2024
	Antibacterial potential of silver and zinc loaded plasma-electrolytic oxidation coatings for dental titanium implants.	Paiwand S, Schafer S, Kopp A, Beikler T, Fiedler I, Gosau M, Fuest S, Smeets R.	Int J Implant Dent	10.1186/s40729-025-00595-w	2025
	The Peri-Implant Microbiome-A Possible Factor Determining the Success of Surgical Peri-Implantitis Treatment?	Hakkers J, Liu L, Hentenaar DFM, Raghoebar GM, Vissink A, Meijer HJA, Walters L, Harmsen HJM, de Waal YCM.	Dent J (Basel)	10.3390/dj12010020	2024
Enzymology	Associations of chairside salivary aMMP-8 findings with periodontal parameters, potentially periodontal pathogenic bacteria and selected blood parameters in systemically healthy adults.	Schmalz G, Hubscher AE, Angermann H, Schmidt J, Schmickler J, Legler TJ, Ziebolz D.	Diagn Microbiol Infect Dis	10.1016/j.diagmicrobio.2019.05.006	2019
	The link between inflammatory/ SCFA profiles and oral/gut microbiome: an observational study in patients with ST-segment elevation myocardial infarction	Constantino-Jonapa L, Aguilar-Villegas O, Hernandez-Ruiz P, Escalona-Montano A, Pallecchi M, Gonzalez-Pacheco H, Bartolucci G, Baldi S, Amezcua-Guerra L, Amedei A, Aguirre-Garcia M.	Curr Res Microb Sci		2025
	2'-Fucosyllactose attenuates aging-related metabolic disorders through modulating gut microbiome-T cell axis.	Li A, Kou R, Wang R, Wang J, Zhang B, Liu J, Hu Y, Wang S.	Aging Cell	10.1111/acel.14343	2025
	Effect of the gut microbiome, plasma metabolome, peripheral cells, and inflammatory cytokines on obesity: a bidirectional two-sample Mendelian randomization study and mediation analysis.	Li Y, Wang X, Zhang Z, Shi L, Cheng L, Zhang X.	Front Immunol	10.3389/fimmu.2024.1348347	2024
Phylogeny	Impact of fresh and fermented vegetable consumption on gut microbiota and body composition: insights from diverse data analysis approaches.	Pihelgas S, Ehala-Aleksejev K, Kutti ML, Kuldjarv R, Kazantseva J.	Front Nutr	10.3389/fnut.2025.1623710	2025
	Volatile sulfide compounds and oral microorganisms on the inner surface of masks in individuals with halitosis during COVID-19 pandemic.	Lee YH, Kim H, Heo DW, Ahn IS, Auh QS.	Sci Rep	10.1038/s41598-023-29080-3	2023
	Effect of oral gargle containing Lespedeza cuneata extract on periodontal health improvement and disease prevention: a randomized, controlled clinical trial.	Kim YR, Nam SH.	BMC Oral Health	10.1186/s12903-023-02816-3	2023
Pathogenicity	Gut microbiota composition and dietary interventions modulate abdominal fat deposition in poultry: Mechanisms and applications.	Gibril BAA, Tu X, Chai X, Xu J.	Poult Sci	10.1016/j.psj.2025.105754	2025
	Platelet-rich fibrin obtained from different protocols affects the formation of the in vitro multispecies subgingival biofilm associated with periodontitis.	Hideaki Uyeda F, Quilles Vargas G, Matias Malavazi L, Tiemi Macedo T, Paim de Abreu Paulo Gomes A, Rocha Bueno M, Henrique Moreira Paulo Tolentino P, Aguiar da Silva LD, Cristina Figueiredo L, Shibli JA, Bueno-Silva B.	J Oral Microbiol	10.1080/20002297.2024.2445598	2025
	Integrated metabolome and microbiome analysis reveals the effect of rumen-protected sulfur-containing amino acids on the meat quality of Tibetan sheep meat.	Liu J, Han L, Hou S, Gui L, Yuan Z, Sun S, Wang Z, Yang B.	Front Microbiol	10.3389/fmicb.2024.1345388	2024
	Efficacy of salivary versus subgingival bacterial sampling for the detection and quantification of periodontal pathogens.	Lee Y, Hong Y, Kim B, Lee D, Kim S, Rhyu IC.	J Periodontal Implant Sci	10.5051/jpis.2002420121	2020
	The impact of predatory bacteria on experimental periodontitis.	Silva PHF, Oliveira LFF, Cardoso RS, Ricoldi MST, Figueiredo LC, Salvador SL, Palioto DB, Furlaneto FAC, Messora MR.	J Periodontol	10.1002/jper.18-0485	2019
	Subgingival microbiome in Chinese patients with generalized aggressive periodontitis compared to healthy controls.	Cui X, Liu J, Xiao W, Chu Y, Ouyang X.	Arch Oral Biol	10.1016/j.archoralbio.2019.02.012	2019
Phylogeny	Oral microbiome dysbiosis may be associated with intra cranial aneurysms.	Ma J, Wang F, Zhu Y, Tian Y, Du C, Yan L, Ding C, Wang D.	BMC Oral Health	10.1186/s12903-024-05015-w	2024
	High prevalence of periodontal disease and periodontopathogen colonization in adults with autism spectrum disorder: a pilot study.	Berbe L, Machouart M, Luc A, Albuisson E, Strazielle C, Bisson C.	Front Microbiol	10.3389/fmicb.2025.1552656	2025
	Streptococcus-mutans and Porphyromonas-gingivalis adhesion to glazed/polished surfaces of CAD/CAM restorations.	Albani R, Habib SR, AlQahtani A, AlHelal AA, Alrabiah M.	Heliyon	10.1016/j.heliyon.2024.e40276	2024
	Hypotensive effect of captopril on deoxycorticosterone acetate-salt-induced hypertensive rat is associated with gut microbiota alteration.	Wu H, Lam TYC, Shum TF, Tsai TY, Chiou J.	Hypertens Res	10.1038/s41440-021-00796-x	2022
Pathogenicity	Can the Correlation of Periodontopathies with Gastrointestinal Diseases Be Used as Indicators in Severe Colorectal Diseases?	Rat LA, Moldovan AF, Trifan DF, Matis L, Murvai GF, Maris L, Ghitea TC, Maghiar MA.	Biomedicines	10.3390/biomedicines11020402	2023
	Effects of the prenatal and postnatal nurturing environment on the phenotype and gut microbiota of mice with polycystic ovary syndrome induced by prenatal androgen exposure: a cross-fostering study.	Kusamoto A, Harada M, Minemura A, Matsumoto A, Oka K, Takahashi M, Sakaguchi N, Azhary JMK, Koike H, Xu Z, Tanaka T, Urata Y, Kunitomi C, Takahashi N, Wada-Hiraike O, Hirota Y, Osuga Y.	Front Cell Dev Biol	10.3389/fcell.2024.1365624	2024
Pathogenicity	Impact of dietary inflammatory index on gestational diabetes mellitus in normal and overweight women: a systematic review and meta-analysis of observational studies.	Liu RL, Chen XQ, Zheng QX, Li JN, Zhu Y, Huang L, Pan YQ, Jiang XM.	Asia Pac J Clin Nutr	10.6133/apjcn.202409_33(3).0002	2024
	Timing of standard chow exposure determines the variability of mouse phenotypic outcomes and gut microbiota profile.	Knuth MM, Campos CV, Smith K, Hutchins EK, Lewis S, York M, Coghill LM, Franklin C, MacFarlane AJ, Ericsson AC, Magnuson T, Ideraabdullah F.	Lab Anim (NY)	10.1038/s41684-024-01477-1	2025
Genetics	In silico discovery of druggable targets in Citrobacter koseri using echinoderm metabolites and molecular dynamics simulation.	Alhaidhal BA, Alsulais FM, Mothana RA, Alanzi AR.	Sci Rep	10.1038/s41598-024-77342-5	2024
	Molecular Screening for High-Risk Human Papillomaviruses in Patients with Periodontitis.	Shishkova K, Gergova R, Tasheva E, Shishkov S, Sirakov I.	Viruses	10.3390/v15030809	2023
	Longitudinal Microbiome Changes in Supragingival Biofilm Transcriptomes Induced by Orthodontics.	Babikow E, Ghaltakhchyan N, Livingston T, Qu Y, Liu C, Hoxie A, Sulkowski T, Bocklage C, Marsh A, Phillips ST, Mitchell KB, Ribeiro AA, Jackson TH, Roach J, Wu D, Divaris K, Jacox LA.	JDR Clin Trans Res	10.1177/23800844231199393	2024
Pathogenicity	A High-Fat, High-Cholesterol Diet Promotes Intestinal Inflammation by Exacerbating Gut Microbiome Dysbiosis and Bile Acid Disorders in Cholecystectomy.	Xu F, Yu Z, Liu Y, Du T, Yu L, Tian F, Chen W, Zhai Q.	Nutrients	10.3390/nu15173829	2023
Genetics	Unveiling microbial dynamics in terasi spontaneous fermentation: Insights into glutamate and GABA production.	Utama GL, Sahab NRM, Nurmilah S, Yarlina VP, Subroto E, Balia RL.	Curr Res Food Sci	10.1016/j.crfs.2024.100950	2025
Pathogenicity	The Association between Dietary Inflammatory Patterns and the Incidence of Frailty and Its Reversal in Older Adults: A Community-Based Longitudinal Follow-Up Study in Taiwan.	Chuang SC, Hsiung CA, Tao MH, Wu IC, Cheng CW, Tseng WT, Lee MM, Chang HY, Hsu CC.	Nutrients	10.3390/nu16172862	2024
	Pentosan polysulfate alleviates interstitial cystitis/bladder pain syndrome by modulating bile acid metabolism and activating the TGR5 receptor through gut microbiota regulation.	Zhu Z, Zhu Y, Sun Q, Xue J, Xie M, Yu Y, Wang B, Shangguan W, Feng Z, Wu P.	Bladder (San Franc)	10.14440/bladder.2024.0060	2025
	Effects of fermented bamboo fiber on intestinal health and fecal pollutants in weaned piglets.	Jia Y, Huang Q, Song R, Tang Y, Feng M, Lu J.	Front Nutr	10.3389/fnut.2025.1538560	2025
	Association between Mild Cognitive Impairment and Gut Microbiota in Elderly Korean Patients.	Kim EJ, Kim JS, Park SE, Seo SH, Cho KM, Kwon SJ, Lee MH, Kim JH, Son HS.	J Microbiol Biotechnol	10.4014/jmb.2305.05009	2023
	Active matrix metalloproteinase-8 and periodontal bacteria-interlink between periodontitis and inflammatory bowel disease?	Schmidt J, Weigert M, Leuschner C, Hartmann H, Raddatz D, Haak R, Mausberg RF, Kottmann T, Schmalz G, Ziebolz D.	J Periodontol	10.1002/jper.17-0486	2018
	Associations between gut microbiota and sleep: a two-sample, bidirectional Mendelian randomization study.	Wu J, Zhang B, Zhou S, Huang Z, Xu Y, Lu X, Zheng X, Ouyang D.	Front Microbiol	10.3389/fmicb.2023.1236847	2023
	The role of exercise-induced short-chain fatty acids in the gut-muscle axis: implications for sarcopenia prevention and therapy.	Fang J, Yan W, Sun X, Chen J.	Front Microbiol	10.3389/fmicb.2025.1665551	2025
Metabolism	Research on Pachymaran to Ameliorate CsA-Induced Immunosuppressive Lung Injury by Regulating Microflora Metabolism.	Ye C, Gao ZH, Chen KQ, Lu FG, Wei K.	Microorganisms	10.3390/microorganisms11092249	2023
Metabolism	Omega-3-Supplemented Fat Diet Drives Immune Metabolic Response in Visceral Adipose Tissue by Modulating Gut Microbiota in a Mouse Model of Obesity.	Portela ND, Galvan C, Sanmarco LM, Bergero G, Aoki MP, Cano RC, Pesoa SA.	Nutrients	10.3390/nu15061404	2023
	Efficacy and mechanisms of cannabis oil for alleviating side effects of breast cancer chemotherapy (CBC2): protocol for randomized controlled trial.	Thu MS, Pongpirul K, Vongsaisuwon M, Vinayanuwattikun C, Banchuen K, Ondee T, Payungporn S, Phutrakool P, Nootim P, Chariyavilaskul P, Cherdchom S, Wanaratna K, Hirankarn N.	BMC Complement Med Ther	10.1186/s12906-024-04426-0	2024
	Fermented Chinese Herbs Improve the Growth and Immunity of Growing Pigs through Regulating Colon Microbiota and Metabolites.	Zhang J, Shu Z, Lv S, Zhou Q, Huang Y, Peng Y, Zheng J, Zhou Y, Hu C, Lan S.	Animals (Basel)	10.3390/ani13243867	2023
	Periodontal condition is associated with disease duration and motoric disabilities in patients with ankylosing spondylitis: results of a cross-sectional study.	Ziebolz D, Douglas D, Douglas D, Schmickler J, Patschan D, Muller GA, Haak R, Schmidt J, Schmalz G, Patschan S.	Rheumatol Int	10.1007/s00296-018-4012-6	2018
Pathogenicity	Causal effect of gut microbiota on the risk of cancer and potential mediation by inflammatory proteins.	Wang Y, Liu W, Liu L, He Y, Luo H, Fang C.	World J Surg Oncol	10.1186/s12957-025-03822-1	2025
	Correlation between Periodontitis and Onset of Alzheimer's Disease: A Literature Review.	Barbarisi A, Visconti V, Lauritano D, Cremonini F, Caccianiga G, Ceraulo S.	Dent J (Basel)	10.3390/dj12100331	2024
Genetics	Active herpesviruses are associated with intensive care unit (ICU) admission in patients pulmonary infection and alter the respiratory microbiome.	Liu Z, Qi CJ, Shi Y, Li T, Fang Y, Zhang Q.	Front Microbiol	10.3389/fmicb.2024.1441476	2024
	Nonsurgical Periodontal Treatment Options and Their Impact on Subgingival Microbiota.	Schulz S, Stein JM, Schumacher A, Kupietz D, Yekta-Michael SS, Schittenhelm F, Conrads G, Schaller HG, Reichert S.	J Clin Med	10.3390/jcm11051187	2022
Phylogeny	Characteristics of tongue coating microbiota in diabetic and non-diabetic kidney patients receiving hemodialysis.	Luo Q, Chu S, Wu Y, Jin L, Liu R, Xu Y, Yu Y, Jin Y, Houndekon LOEP, Hu H, Zou Y, Huang H, Chen H.	BMC Oral Health	10.1186/s12903-025-05455-y	2025
	Microbiota Dysbiosis and Gut Barrier Dysfunction Associated with Non-Alcoholic Fatty Liver Disease Are Modulated by a Specific Metabolic Cofactors' Combination.	Quesada-Vazquez S, Bone C, Saha S, Triguero I, Colom-Pellicer M, Aragones G, Hildebrand F, Del Bas JM, Caimari A, Beraza N, Escote X.	Int J Mol Sci	10.3390/ijms232213675	2022
	Revisiting Socransky's Complexes: A Review Suggesting Updated New Bacterial Clusters (GF-MoR Complexes) for Periodontal and Peri-Implant Diseases and Conditions.	Fernandes GVO, Mosley GA, Ross W, Dagher A, Martins BGDS, Fernandes JCH.	Microorganisms	10.3390/microorganisms12112214	2024
	Effects of dietary fiber and biotic supplementation on apparent total tract macronutrient digestibility and the fecal characteristics, metabolites, and microbiota of healthy adult dogs.	Wilson SM, Kang Y, Marshall K, Swanson KS.	J Anim Sci	10.1093/jas/skae138	2024
	Canagliflozin alters the gut, oral, and ocular surface microbiota of patients with type 2 diabetes mellitus.	Wang L, Liang C, Song X, Jia X, Wang X, Zhang Y, Xie Q, Zheng N, Yuan H.	Front Endocrinol (Lausanne)	10.3389/fendo.2023.1256292	2023
	Prevalence of species of yellow, purple and green microbial complexes in endo-perio lesions: a systematic review.	Gambin DJ, Vitali FC, Casanova KAS, DE Carli JP, Mazzon RR, Gomes BPFA, Trentin MS, Duque TM.	Braz Oral Res	10.1590/1807-3107bor-2024.vol38.0048	2024
	The Effect of Non-Surgical Periodontal Therapy on Subgingival Microbiota: A Systematic Review and Meta-Analysis.	Krajewski A, Perussolo J, Ercal P, Gkranias N, Donos N.	J Periodontal Res	10.1111/jre.13409	2025
	Ginger essential oil and citral ameliorates atherosclerosis in ApoE^-/- mice by modulating trimethylamine-N-oxide and gut microbiota.	Panyod S, Wu WK, Peng SY, Tseng YJ, Hsieh YC, Chen RA, Huang HS, Chen YH, Chuang HL, Hsu CC, Shen TD, Yang KC, Ho CT, Wu MS, Sheen LY.	NPJ Sci Food	10.1038/s41538-023-00196-0	2023
Pathogenicity	Cocoa Polyphenols Alter the Fecal Microbiome Without Mitigating Colitis in Mice Fed Healthy or Western Basal Diets	Stewart E, Almatani M, Hayden M, Rompato G, Case J, Rice S, Hintze K, Benninghoff A.	Nutrients		2025
	Hypochlorous Acid as a Potential Postsurgical Antimicrobial Agent in Periodontitis: A Randomized, Controlled, Non-Inferiority Trial.	Plata JC, Diaz-Baez D, Delgadillo NA, Castillo DM, Castillo Y, Hurtado CP, Neuta Y, Calderon JL, Lafaurie GI.	Antibiotics (Basel)	10.3390/antibiotics12081311	2023
	The combined and individual impact of diabetes and smoking on key subgingival periodontal pathogens in patients with chronic periodontitis.	Joaquim CR, Miranda TS, Marins LM, Silva HDP, Feres M, Figueiredo LC, Duarte PM.	J Periodontal Res	10.1111/jre.12516	2018
	Emerging topics on basic research in hypertension: interorgan communication and the need for interresearcher collaboration.	Shinohara K.	Hypertens Res	10.1038/s41440-023-01176-3	2023
	Identification of Bacterial Networks and Relationship to Host Responses in Early Periodontitis Population over 24 Months.	Biesbrock AR, Xie S, Hu P, Tansky CS, Wei X, Ye H, Circello B, Zini A, Tobias G, Tamura M, Parlov M.	Int J Mol Sci	10.3390/ijms262210823	2025
	Quantification of Bacteria in Mouth-Rinsing Solution for the Diagnosis of Periodontal Disease.	Kim JH, Oh JW, Lee Y, Yun JH, Choi SH, Lee DW.	J Clin Med	10.3390/jcm10040891	2021
	A randomized, placebo-controlled clinical trial evaluating of a mouthwash containing Sambucus williamsii var. coreana extract for prevention of gingivitits.	Kim YR, Nam SH.	Sci Rep	10.1038/s41598-022-15445-7	2022
	Antibodies against Periodontal Microorganisms and Cognition in Older Adults.	Merchant AT, Yi F, Vidanapathirana NP, Lohman M, Zhang J, Newman-Norlund RD, Fridriksson J.	JDR Clin Trans Res	10.1177/23800844211072784	2023
Pathogenicity	The Beneficial Effects of Combining Anti-Abeta Antibody NP106 and Curcumin Analog TML-6 on the Treatment of Alzheimer's Disease in APP/PS1 Mice.	Su IJ, Hsu CY, Shen S, Chao PK, Hsu JT, Hsueh JT, Liang JJ, Hsu YT, Shie FS.	Int J Mol Sci	10.3390/ijms23010556	2022
Pathogenicity	Fecal microbiota transplantation modulates jejunal host-microbiota interface in weanling piglets.	Mooyottu S, Muyyarikkandy MS, Yousefi F, Li G, Sahin O, Burrough E, Scaria J, Sponseller B, Ramirez A.	Microbiome	10.1186/s40168-025-02042-9	2025
Phylogeny	Salivary microbiome and MRP-8/14 levels in children with gingivitis, healthy children, and their mothers.	Blufstein A, Pejcic N, Spettel K, Hausmann B, Seki D, Ertekin T, Hinrichs-Priller J, Altner S, Nehr M, Bekes K, Makristathis A, Andrukhov O.	J Periodontol	10.1002/jper.23-0632	2024
	Gut microbiota diversity is prognostic and associated with benefit from chemo-immunotherapy in metastatic triple-negative breast cancer.	Ullern A, Holm K, Rossevold AH, Andresen NK, Bang C, Lingjaerde OC, Naume B, Hov JR, Kyte JA.	Mol Oncol	10.1002/1878-0261.13760	2025
	Investigating the metabolite signature of an altered oral microbiota as a discriminant factor for multiple sclerosis: a pilot study.	Boussamet L, Montassier E, Mathe C, Garcia A, Morille J, Shah S, Dugast E, Wiertlewski S, Gourdel M, Bang C, Sturner KH, Masson D, Nicot AB, Vince N, Laplaud DA, Feinstein DL, Berthelot L.	Sci Rep	10.1038/s41598-024-57949-4	2024
	Causal impact of gut microbiota on five liver diseases: insights from mendelian randomization and single-cell RNA sequencing.	Li N, Chen X, Xiong S, Cheng Y, Deng J, Zhang J, Yu F, Hao L, Li S, Hu X.	Front Genet	10.3389/fgene.2024.1362139	2024
	Gum-gut axis: The potential role of salivary biomarkers in the diagnosis and monitoring progress of inflammatory bowel diseases.	Balto H, Al-Hadlaq S, Alhadlaq A, El-Ansary A.	Saudi Dent J	10.1016/j.sdentj.2022.12.006	2023
	Probiotic Bifidobacteria in Managing Periodontal Disease: A Systematic Review.	Matsubara VH, Fakhruddin KS, Ngo H, Samaranayake LP.	Int Dent J	10.1016/j.identj.2022.11.018	2023
	Salivary Microbiome Diversity in Kuwaiti Adolescents with Varied Body Mass Index-A Pilot Study.	Alqaderi H, Ramakodi MP, Nizam R, Jacob S, Devarajan S, Eaaswarkhanth M, Al-Mulla F.	Microorganisms	10.3390/microorganisms9061222	2021
Genetics	The causal correlation between gut microbiota abundance and pathogenesis of cervical cancer: a bidirectional mendelian randomization study.	Yang H.	Front Microbiol	10.3389/fmicb.2024.1336101	2024
	Integrating data from spontaneous and induced trans-10 shift of ruminal biohydrogenation reveals discriminant bacterial community changes at the OTU level.	Enjalbert F, Zened A, Cauquil L, Meynadier A.	Front Microbiol	10.3389/fmicb.2022.1012341	2022
	Relationship Between the Salivary Microbiome and Oral Malodor Metabolites in Older Thai Individuals with Periodontitis and the Cytotoxic Effects of Malodor Compounds on Human Oral Squamous Carcinoma (HSC-4) Cells.	Srila W, Sripilai K, Binlateh T, Thammanichanon P, Tiskratok W, Noisa P, Jitprasertwong P.	Dent J (Basel)	10.3390/dj13010036	2025
Phylogeny	Metataxonomics and Metabolomics Profiles in Metabolic Dysfunction-Associated Fatty Liver Disease Patients on a "Navelina" Orange-Enriched Diet.	Calabrese FM, Aloisio Caruso E, De Nunzio V, Celano G, Pinto G, Cofano M, Sallustio S, Iacobellis I, Apa CA, Santamaria M, Calasso M, Giannelli G, De Angelis M, Notarnicola M.	Nutrients	10.3390/nu16203543	2024
	The utility of gingival crevicular fluid matrix metalloproteinase-8 provides site-specific diagnostic value for periodontal grading.	Nedzi-Gora M, Gorska R, Gorski B.	Cent Eur J Immunol	10.5114/ceji.2021.107031	2021
	Mucosal bacterial dysbiosis in patients with nodular lymphoid hyperplasia in the terminal ileum.	Jiang QL, Lu Y, Zhang MJ, Cui ZY, Pei ZM, Li WH, Lu LG, Wang JJ, Lu YY.	World J Gastroenterol	10.3748/wjg.v28.i8.811	2022
	Chicken Gut Microbiota Responses to Dietary Bacillus subtilis Probiotic in the Presence and Absence of Eimeria Infection.	Memon FU, Yang Y, Zhang G, Leghari IH, Lv F, Wang Y, Laghari F, Khushk FA, Si H.	Microorganisms	10.3390/microorganisms10081548	2022
	Anxiety-like behavior during protracted morphine withdrawal is driven by gut microbial dysbiosis and attenuated with probiotic treatment.	Oppenheimer M, Tao J, Moidunny S, Roy S.	Gut Microbes	10.1080/19490976.2025.2517838	2025
	Microbiological and Salivary Biomarkers Successfully Predict Site-Specific and Whole-Mouth Outcomes of Nonsurgical Periodontal Treatment.	Al-Sharqi AJ, Abdulkareem A.	J Clin Med	10.3390/jcm13144256	2024
Enzymology	Comparison of Two Different Sampling Methods for Subgingival Plaque: Subgingival Paper Points or Mouthrinse Sample?	Nickles K, Scharf S, Rollke L, Dannewitz B, Eickholz P.	J Periodontol	10.1902/jop.2016.160249	2017
Phylogeny	Fecal microbiome of pigs fed diets differing in protein and amino acid content raised in thermoneutral or cyclical heat stress conditions.	de Oliveira MJK, Yang Q, Brandao Melo AD, Marcal DA, Korth N, Pavlovikj N, Benson AK, Htoo JKK, Brand HG, Hauschild L, Gomes-Neto JC.	Front Microbiol	10.3389/fmicb.2025.1585374	2025
Phylogeny	Role of dietary energy and protein proportions on serum inflammatory factors, antioxidant capacity, and rumen microbiota in postpartum weaned female yak	Zhu Y, Cidan Y, Lu S, Cisang Z, Gusang D, Danzeng Q, Ali M, Saleem M, Li K, Basang W.	BMC Microbiol		2025
	Does obesity influence the subgingival microbiota composition in periodontal health and disease?	Maciel SS, Feres M, Goncalves TE, Zimmermann GS, da Silva HD, Figueiredo LC, Duarte PM.	J Clin Periodontol	10.1111/jcpe.12634	2016
Genetics	Oral microbiome and risk of incident head and neck cancer: A nested case-control study.	Wu Z, Han Y, Wan Y, Hua X, Chill SS, Teshome K, Zhou W, Liu J, Wu D, Hutchinson A, Jones K, Dagnall CL, Hicks BD, Liao L, Hallen-Adams H, Shi J, Abnet CC, Sinha R, Chaturvedi A, Vogtmann E.	Oral Oncol	10.1016/j.oraloncology.2022.106305	2023
	Phenotypic Analysis, Molecular Characterization, and Antibiogram of Caries-Causing Bacteria Isolated from Dental Patients.	Farva K, Sattar H, Ullah H, Raziq A, Mehmood MD, Tareen AK, Sultan IN, Zohra Q, Khan MW.	Microorganisms	10.3390/microorganisms11081952	2023
	Anti-inflammatory and antimicrobial efficacy of coconut oil for periodontal pathogens: a triple-blind randomized clinical trial.	Pardinas Lopez S, Garcia-Caro ME, Vallejo JA, Aja-Macaya P, Conde-Perez K, Nion-Cabeza P, Khouly I, Bou G, Cendal AIR, Diaz-Prado S, Poza M.	Clin Oral Investig	10.1007/s00784-025-06267-8	2025
	Unveiling the Pathogenic Bacteria Causing Descending Necrotizing Mediastinitis.	Sun Q, Li Z, Wang P, Zhao J, Chen S, Sun M.	Front Cell Infect Microbiol	10.3389/fcimb.2022.873161	2022
	Effect of photoactivated disinfection using light in the blue spectrum.	Barenfaller V, Clausen C, Sculean A, Eick S.	J Photochem Photobiol B	10.1016/j.jphotobiol.2016.03.006	2016
	Suspension of oral hygiene practices highlights key bacterial shifts in saliva, tongue, and tooth plaque during gingival inflammation and resolution.	Hall MW, Wellappuli NC, Huang RC, Wu K, Lam DK, Glogauer M, Beiko RG, Senadheera DB.	ISME Commun	10.1038/s43705-023-00229-5	2023
	Assessment of Pulp Vitality in Multirooted Teeth With Advanced Periodontal Disease: A Clinical and Histological Study.	Arulmari S, Athul A, Bhuvaneswari M, Vijayarangan A, Elumalai A, Muthukali S, Balachandran A.	Cureus	10.7759/cureus.33298	2023
	Microbiological profile of patients with generalized gingivitis undergoing periodontal therapy and administration of Bifidobacterium animalis subsp. lactis HN019: A randomized clinical trial.	Furlaneto F, Levi YLAS, Savio DSF, da Silveira ICF, de Oliveira AM, Lourenco TGB, Ribeiro MC, Silva PHF, Salvador SLS, Colombo APV, Messora MR.	PLoS One	10.1371/journal.pone.0310529	2024
Genetics	Diagnosis of Cholangiocarcinoma: The New Biological and Technological Horizons.	Selvaggi F, Lopetuso LR, Delli Pizzi A, Melchiorre E, Murgiano M, Taraschi AL, Cotellese R, Diana M, Vivarelli M, Mocchegiani F, Catalano T, Aceto GM.	Diagnostics (Basel)	10.3390/diagnostics15081011	2025
	Analysis of the Microbiome on the Surface of Corroded Titanium Dental Implants in Patients with Periimplantitis and Diode Laser Irradiation as an Aid in the Implant Prosthetic Treatment: An Ex Vivo Study.	Wawrzyk A, Rahnama M, Sofinska-Chmiel W, Wilczynski S, Gutarowska B, Konka A, Zeljas D, Lobacz M.	Materials (Basel)	10.3390/ma15175890	2022
	Multiomics Analysis Reveals Significant Disparities in the Oral Microbiota and Metabolites Between Pregnant Women with and without Periodontitis.	Zhao M, Yang C, Zhu L, Guo X, Ma H, Luo Y, Wang Q, Chen J.	Infect Drug Resist	10.2147/idr.s475164	2024
	[Profiles and differences of submucosal microbial in peri-implantitis and health implants: A cross-sectional study].	Sun F, Liu J, Li SQ, Wei YP, Hu WJ, Wang C.	Beijing Da Xue Xue Bao Yi Xue Ban	10.19723/j.issn.1671-167x.2023.01.005	2023
Enzymology	Microbial profile of symptomatic pericoronitis lesions: a cross-sectional study.	Ribeiro MHB, Ribeiro PC, Retamal-Valdes B, Feres M, Canabarro A.	J Appl Oral Sci	10.1590/1678-7757-2019-0266	2020
	The Prevalence of Periodontitis and Assessment of Oral Micro-Biota in Patients with Hidradenitis Suppurativa: A Descriptive Cross-Sectional Study.	Jastrzab B, Pasnik-Chwalik B, Konopka T, Krajewski PK, Szepietowski JC, Matusiak L.	J Clin Med	10.3390/jcm11237065	2022
	A Pilot Study of the Gut Microbiota in Spine Fusion Surgery Patients.	Cyphert EL, Clare S, Dash A, Nixon JC, Raphael J, Harrison J, Heilbronner A, Kim HJ, Cunningham M, Lebl D, Schwab F, Hernandez CJ, Stein EM.	HSS J	10.1177/15563316231201410	2025
	Evaluation of microbiome in primary and permanent dentition in grade C periodontitis in young individuals.	Koo SS, Fernandes JG, Li L, Huang H, Aukhil I, Harrison P, Diaz PI, Shaddox LM.	J Periodontol	10.1002/jper.23-0504	2024
	HIV infection and exposure is associated with increased cariogenic taxa, reduced taxonomic turnover, and homogenized spatial differentiation for the supragingival microbiome.	Mann AE, Aumend C, Crull S, O'Connell LM, Osagie E, Akhigbe P, Obuekwe O, Omoigberale A, Rowe M, Blouin T, Soule A, Kelly C, DOMHaIN Study Team, Burne RA, Coker MO, Richards VP.	Microbiome	10.1186/s40168-025-02123-9	2025
	Causal effects of specific gut microbiota on musculoskeletal diseases: a bidirectional two-sample Mendelian randomization study.	Chen S, Han H, Sun X, Zhou G, Zhou Q, Li Z.	Front Microbiol	10.3389/fmicb.2023.1238800	2023
	Unravelling the gut-brain connection: a systematic review of migraine and the gut microbiome.	Mugo CW, Church E, Horniblow RD, Mollan SP, Botfield H, Hill LJ, Sinclair AJ, Grech O.	J Headache Pain	10.1186/s10194-025-02039-7	2025
	Host-microbe computational proteomic landscape in oral cancer revealed key functional and metabolic pathways between Fusobacterium nucleatum and cancer progression.	Munoz-Grez CP, Vidal MA, Rojas TB, Ferrada LE, Zuniga FA, Vera AA, Sanhueza SA, Quiroga RA, Cabrera CD, Antilef BE, Cartes RA, Acevedo MP, Fraga MA, Alarcon-Zapata PF, Hernandez MA, Salas-Burgos AM, Tapia-Belmonte F, Yanez ML, Riquelme EM, Gonzalez WA, Rivera CA, Onate AA, Lamperti LI, Nova-Lamperti E.	Int J Oral Sci	10.1038/s41368-024-00326-8	2025
Pathogenicity	Inulin protects against the harmful effects of dietary emulsifiers on mice gut microbiome.	Bekar C, Ozmen O, Ozkul C, Ayaz A.	PeerJ	10.7717/peerj.17110	2024
	The Efficiency of Photodynamic Therapy in the Bacterial Decontamination of Periodontal Pockets and Its Impact on the Patient.	Munteanu IR, Luca RE, Mateas M, Darawsha LD, Boia S, Boia ER, Todea CD.	Diagnostics (Basel)	10.3390/diagnostics12123026	2022
Transcriptome	Discrimination of Bacterial Community Structures among Healthy, Gingivitis, and Periodontitis Statuses through Integrated Metatranscriptomic and Network Analyses.	Nemoto T, Shiba T, Komatsu K, Watanabe T, Shimogishi M, Shibasaki M, Koyanagi T, Nagai T, Katagiri S, Takeuchi Y, Iwata T.	mSystems	10.1128/msystems.00886-21	2021
Metabolism	Expression of Interleukin-17, Tumor Necrosis Factor-Alpha, and Matrix Metalloproteinase-8 in Patients with Chronic Peri-Implant Mucositis.	Gleiznys D, Kriauciunas A, Maminskas J, Stumbras A, Giedrimiene D, Niekrash C, Gleiznys A, Sakalauskiene J, Vitkauskiene A.	Med Sci Monit	10.12659/msm.932243	2021
	Subgingival bacterial recolonization after scaling and root planing in smokers with chronic periodontitis.	Feres M, Bernal M, Matarazzo F, Faveri M, Duarte PM, Figueiredo LC.	Aust Dent J	10.1111/adj.12225	2015
	Acetobacter pasteurianus BP2201 alleviates alcohol-induced hepatic and neuro-toxicity and modulate gut microbiota in mice.	Wen X, Wang Z, Liu Q, Lessing DJ, Chu W.	Microb Biotechnol	10.1111/1751-7915.14303	2023
	Cytokines profile in gingival crevicular fluid of subjects wearing fixed dental prostheses: a systematic review and meta-analysis.	Alarcon-Sanchez MA, Heboyan A.	Eur J Med Res	10.1186/s40001-024-02031-y	2024
	Periodontal Status and Subgingival Biofilms in Cystic Fibrosis Adults.	Pawlaczyk-Kamienska T, Sniatala R, Batura-Gabryel H, Borysewicz-Lewicka M, Cofta S.	Pol J Microbiol	10.33073/pjm-2019-040	2019
	Alteration of Skin Microbiome in CKD Patients Is Associated With Pruritus and Renal Function.	Tian Y, Gu C, Yan F, Gu Y, Feng Y, Chen J, Sheng J, Hu L, Jiang P, Guo W, Feng N.	Front Cell Infect Microbiol	10.3389/fcimb.2022.923581	2022
	Disturbance of the human gut microbiota in patients with Myotonic Dystrophy type 1.	Mahdavi M, Prevost K, Balthazar P, Hus IF, Duchesne E, Dumont N, Gagne-Ouellet V, Gagnon C, Laforest-Lapointe I, Masse E.	Comput Struct Biotechnol J	10.1016/j.csbj.2024.05.009	2024
Pathogenicity	Is the progression rate of periodontitis related to subgingival biofilm composition or gingival crevicular fluid IL-1beta and MMP-8 concentrations?	Nedzi-Gora M, Gorska R, Gorski B.	Cent Eur J Immunol	10.5114/ceji.2020.101256	2020
Enzymology	Detection of subgingival periodontal pathogens--comparison of two sampling strategies.	Nickles K, Scharf S, Rollke L, Mayer I, Mayer M, Eickholz P.	Clin Oral Investig	10.1007/s00784-015-1530-4	2016
	The Relationship between Age, Gender, BMI, Diet, Salivary pH and Periodontal Pathogenic Bacteria in Children and Adolescents: A Cross-Sectional Study.	Motoc GV, Juncar RI, Moca AE, Motoc O, Vaida LL, Juncar M.	Biomedicines	10.3390/biomedicines11092374	2023
	Characterization of tongue coating microbiome from patients with colorectal cancer.	Chen Q, Huang X, Zhang H, Jiang X, Zeng X, Li W, Su H, Chen Y, Lin F, Li M, Gu X, Jin H, Wang R, Diao D, Wang W, Li J, Wei S, Zhang W, Liu W, Huang Z, Deng Y, Luo W, Liu Z, Zhang B.	J Oral Microbiol	10.1080/20002297.2024.2344278	2024
	Portulaca oleracea Polysaccharides Modulate Intestinal Microflora in Aged Rats in vitro.	Fu Q, Zhou S, Yu M, Lu Y, He G, Huang X, Huang Y.	Front Microbiol	10.3389/fmicb.2022.841397	2022
	Feeding hempseed cake alters the bovine gut, respiratory and reproductive microbiota.	Winders TM, Holman DB, Schmidt KN, Luecke SM, Smith DJ, Neville BW, Dahlen CR, Swanson KC, Amat S.	Sci Rep	10.1038/s41598-023-35241-1	2023
	Antimicrobial Chemotherapy for Recalcitrant Severe Human Periodontitis.	Rams TE, Slots J.	Antibiotics (Basel)	10.3390/antibiotics12020265	2023
Pathogenicity	The Effects of Appropriate Perioperative Exercise on Perioperative Neurocognitive Disorders: a Narrative Review.	Feng H, Zhang Z, Lyu W, Kong X, Li J, Zhou H, Wei P.	Mol Neurobiol	10.1007/s12035-023-03864-0	2024
	Traditional Chinese Medicine: An Exogenous Regulator of Crosstalk between the Gut Microbial Ecosystem and CKD.	Sun X, Sun W, Huang Y, Chen J.	Evid Based Complement Alternat Med	10.1155/2022/7940684	2022
	Diagnostic Models for Screening of Periodontitis with Inflammatory Mediators and Microbial Profiles in Saliva.	Lee J, Lee JB, Song HY, Son MJ, Li L, Rhyu IC, Lee YM, Koo KT, An JS, Kim JS, Kim E.	Diagnostics (Basel)	10.3390/diagnostics10100820	2020
Biotechnology	The Alpine ibex (Capra ibex) gut microbiome, seasonal dynamics, and potential application in lignocellulose bioconversion.	Nanetti E, Scicchitano D, Palladino G, Interino N, Corlatti L, Pedrotti L, Zanetti F, Pagani E, Esposito E, Brambilla A, Grignolio S, Marotti I, Turroni S, Fiori J, Rampelli S, Candela M.	iScience	10.1016/j.isci.2024.110194	2024
	Treponema denticola as a prognostic biomarker for periodontitis in dogs.	Kwon D, Bae K, Kim H, Kim SH, Lee D, Lee JH.	PLoS One	10.1371/journal.pone.0262859	2022
	Effects of a mouthwash containing Lespedeza cuneata extract on risk of dental caries: a randomized, placebo-controlled clinical trial.	Kim YR, Nam SH.	Sci Rep	10.1038/s41598-022-25162-w	2022
	Grape seed and skin extract, a potential prebiotic with anti-obesity effect through gut microbiota modulation.	Mokrani M, Charradi K, Limam F, Aouani E, Urdaci MC.	Gut Pathog	10.1186/s13099-022-00505-0	2022
Genetics	Causal associations between gut microbiota, circulating inflammatory proteins, and epilepsy: a multivariable Mendelian randomization study.	Yang H, Liu W, Gao T, Liu Q, Zhang M, Liu Y, Ma X, Zhang N, Shi K, Duan M, Ma S, Zhang X, Cheng Y, Qu H, Chen M, Zhan S.	Front Immunol	10.3389/fimmu.2024.1438645	2024
	Relationship between serologic markers of periodontal bacteria and metabolic syndrome and its components.	Shrestha D, Choi YH, Zhang J, Hazlett LJ, Merchant AT.	J Periodontol	10.1902/jop.2014.140408	2015
	Protozoans in subgingival biofilm: clinical and bacterial associated factors and impact of scaling and root planing treatment.	Dubar M, Zaffino ML, Remen T, Thilly N, Cunat L, Machouart MC, Bisson C.	J Oral Microbiol	10.1080/20002297.2019.1693222	2020
	Effects of Laser Therapy on Periodontal Status in Adult Patients Undergoing Orthodontic Treatment.	Lazar L, Dako T, Martu MA, Bica CI, Bud A, Suciu M, Pacurar M, Lazar AP.	Diagnostics (Basel)	10.3390/diagnostics12112672	2022
	The Relationship between Dietary Habits and Periodontal Pathogens in a Sample of Romanian Children and Adolescents: A Cross-Sectional Study	Motoc G, Juncar R, Moca A, Motoc O, Moca R, Tig I, Vaida L, Juncar M.	Children (Basel)		2023
	Protective Effects of a Novel Probiotic Bifidobacterium pseudolongum on the Intestinal Barrier of Colitis Mice via Modulating the Ppargamma/STAT3 Pathway and Intestinal Microbiota.	Guo W, Mao B, Cui S, Tang X, Zhang Q, Zhao J, Zhang H.	Foods	10.3390/foods11111551	2022
	Metronidazole and amoxicillin as adjuncts to scaling and root planing for the treatment of type 2 diabetic subjects with periodontitis: 1-year outcomes of a randomized placebo-controlled clinical trial.	Miranda TS, Feres M, Perez-Chaparro PJ, Faveri M, Figueiredo LC, Tamashiro NS, Bastos MF, Duarte PM.	J Clin Periodontol	10.1111/jcpe.12282	2014
	Efficacy of Systemic Amoxicillin-Metronidazole in Periodontitis Patients with Diabetes Mellitus: A Systematic Review of Randomized Clinical Trials.	Mugri MH.	Medicina (Kaunas)	10.3390/medicina58111605	2022
	The effect of dental material type and masticatory forces on periodontitis-derived subgingival microbiomes.	Montoya C, Baraniya D, Chen T, Al-Hebshi NN, Orrego S.	Biofilm	10.1016/j.bioflm.2024.100199	2024
	The Usefulness of Resistant Maltodextrin and Chitosan Oligosaccharide in Management of Gut Leakage and Microbiota in Chronic Kidney Disease.	Anegkamol W, Kamkang P, Hunthai S, Kaewwongse M, Taweevisit M, Chuaypen N, Rattanachaisit P, Dissayabutra T.	Nutrients	10.3390/nu15153363	2023
	The Impact of Mineral and Energy Supplementation and Phytogenic Compounds on Rumen Microbial Diversity and Nitrogen Utilization in Grazing Beef Cattle.	Teobaldo RW, Granja-Salcedo YT, Cardoso ADS, Constancio MTL, Brito TR, Romanzini EP, Reis RA.	Microorganisms	10.3390/microorganisms11030810	2023
	Effects of waste milk feeding on rumen fermentation and bacterial community of pre-weaned and post-weaned dairy calves.	Zhang X, Cheng C, Lv J, Bai H, Sun F, Liu C, Liu C, Zhang Y, Xin H.	Front Microbiol	10.3389/fmicb.2022.1063523	2022
	Strategies for treating the cold tumors of cholangiocarcinoma: core concepts and future directions.	Zhang G, Li J, Li G, Zhang J, Yang Z, Yang L, Jiang S, Wang J.	Clin Exp Med	10.1007/s10238-024-01460-7	2024
	The effects of different orthodontic appliances upon microbial communities.	Ireland AJ, Soro V, Sprague SV, Harradine NW, Day C, Al-Anezi S, Jenkinson HF, Sherriff M, Dymock D, Sandy JR.	Orthod Craniofac Res	10.1111/ocr.12037	2014
	Efficacy of Preprocedural Boric Acid Mouthrinse in Reducing Viable Bacteria in Dental Aerosols Produced during Ultrasonic Scaling.	Nisha S, Shivamallu AB, Gujjari SK, Shashikumar P, Ali NM, Kulkarni M.	Contemp Clin Dent	10.4103/ccd.ccd_374_20	2021
Phylogeny	Inter-bacterial correlations in subgingival biofilms: a large-scale survey.	Loozen G, Ozcelik O, Boon N, De Mol A, Schoen C, Quirynen M, Teughels W.	J Clin Periodontol	10.1111/jcpe.12167	2014
	Serum IgG Antibodies against Periodontal Microbes and Cancer Mortality.	Zhong Z, Jin Q, Zhang J, Park YM, Shrestha D, Bai J, Merchant AT.	JDR Clin Trans Res	10.1177/2380084419859484	2020
	The influence of diabetes mellitus on the peri-implant microflora: A cross-sectional study.	Sabanci A, Eltas A, Celik B, Otlu B.	J Oral Biol Craniofac Res	10.1016/j.jobcr.2022.05.007	2022
	Association of Prevotella intermedia with oropharyngeal cancer: A patient-control study.	Castaneda-Corzo GJ, Infante-Rodriguez LF, Villamil-Poveda JC, Bustillo J, Cid-Arregui A, Garcia-Robayo DA.	Heliyon	10.1016/j.heliyon.2023.e14293	2023
	Alleviating effects of gut micro-ecologically regulatory treatments on mice with constipation.	Zhao Y, Liu Q, Hou Y, Zhao Y.	Front Microbiol	10.3389/fmicb.2022.956438	2022
Enzymology	Analysis of bacterial flora associated with peri-implantitis using obligate anaerobic culture technique and 16S rDNA gene sequence.	Tamura N, Ochi M, Miyakawa H, Nakazawa F.	Int J Oral Maxillofac Implants	10.11607/jomi.2570	2013
Phylogeny	Microbial analysis of subgingival plaque samples compared to that of whole saliva in patients with periodontitis.	Haririan H, Andrukhov O, Bertl K, Lettner S, Kierstein S, Moritz A, Rausch-Fan X.	J Periodontol	10.1902/jop.2013.130306	2014
	Multi-cohort analysis of depression-associated gut bacteria sheds insight on bacterial biomarkers across populations.	Liang S, Sin ZY, Yu J, Zhao S, Xi Z, Bruzzone R, Tun HM.	Cell Mol Life Sci	10.1007/s00018-022-04650-2	2022
Pathogenicity	Unraveling the mysteries of the gut-kidney axis: the protective role of traditional Chinese medicine in chronic kidney disease.	Li J, Diao L, Li M, Huang F, Sun K.	Front Microbiol	10.3389/fmicb.2025.1642377	2025
	A novel in vitro periodontal pocket model to evaluate the effect of root surface instrumentation on biofilm-epithelial cell interactions.	Lang KN, Sculean A, Eick S, Stahli A.	Clin Oral Investig	10.1007/s00784-022-04371-7	2022
	Diversity of Oral Microbiome of Women From Urban and Rural Areas of Indonesia: A Pilot Study.	Widyarman AS, Theodorea CF, Udawatte NS, Drestia AM, Bachtiar EW, Astoeti TE, Bachtiar BM.	Front Oral Health	10.3389/froh.2021.738306	2021
Phylogeny	Characteristics of mouse intestinal microbiota during acute liver injury and repair following 50% partial hepatectomy.	Shao Y, Jiang Y, Li H, Zhang F, Hu Z, Zheng S.	Exp Ther Med	10.3892/etm.2021.10385	2021
	Screening and Assessment of Antimicrobial Susceptibility of Periodontopathic Bacteria in Peruvian Patients with Periodontitis: A Pilot Study.	Aguilar-Luis MA, Casas Apayco L, Tinco Valdez C, De Lama-Odria MDC, Weilg C, Mazulis F, Silva-Caso WG, Del Valle-Mendoza JM.	Int J Dent	10.1155/2021/2695793	2021
	Investigating the relationship between periodontitis and specific memory processes in the search for cognitive markers of Alzheimer's disease risk.	Wereszczynski M, Smigiel A, Tomaszewska I, Niedzwienska A.	Sci Rep	10.1038/s41598-023-38674-w	2023
	Competition Between Butyrate Fermenters and Chain-Elongating Bacteria Limits the Efficiency of Medium-Chain Carboxylate Production.	Liu B, Kleinsteuber S, Centler F, Harms H, Strauber H.	Front Microbiol	10.3389/fmicb.2020.00336	2020
	Oral Absorbent AST-120 Is Associated with Compositional and Functional Adaptations of Gut Microbiota and Modification of Serum Short and Medium-Chain Fatty Acids in Advanced CKD Patients.	Hsu CK, Su SC, Chang LC, Yang KJ, Lee CC, Hsu HJ, Chen YT, Sun CY, Wu IW.	Biomedicines	10.3390/biomedicines10092234	2022
Metabolism	Saturated Fatty Acids and Omega-3 Polyunsaturated Fatty Acids Improve Metabolic Parameters in Ovariectomized Female Mice.	Sui K, Yasrebi A, Malonza N, Jaffri ZH, Fisher SE, Seelenfreund I, McGuire BD, Martinez SA, MacDonell AT, Tveter KM, Longoria CR, Shapses SA, Campbell SC, Roopchand DE, Roepke TA.	Endocrinology	10.1210/endocr/bqad059	2023
	Change of termite hindgut metabolome and bacteria after captivity indicates the hindgut microbiota provides nutritional factors to the host.	Alom MS, Cen Y, Tang R, Chen D, Dou H, Mo Z, Du H.	Front Bioeng Biotechnol	10.3389/fbioe.2023.1228918	2023
	Dynamic changes of Bacterial Microbiomes in Oropharynx during Infection and Recovery of COVID-19 Omicron Variant.	Cui G, Sun Y, Zou Y, Sun R, Gao Y, Liu X, Zhou Y, Zhang D, Wang X, Li Y, Liu L, Zhang G, Rao B, Yu Z, Ren Z.	PLoS Pathog	10.1371/journal.ppat.1012075	2024
	Microbial profiling of peri-implantitis compared to the periodontal microbiota in health and disease using 16S rRNA sequencing.	Kim HJ, Ahn DH, Yu Y, Han H, Kim SY, Joo JY, Chung J, Na HS, Lee JY.	J Periodontal Implant Sci	10.5051/jpis.2202080104	2023
	Parkinson's disease alters the composition of subgingival microbiome.	Yay E, Yilmaz M, Toygar H, Balci N, Alvarez Rivas C, Bolluk Kilic B, Zirh A, Paster B, Kantarci A.	J Oral Microbiol	10.1080/20002297.2023.2250650	2023
	Effect of two milk supplements and two ways of administration on growth performance, welfare and fecal microbial ecology of suckling piglets.	Correa F, Luise D, Negrini C, Ruggeri R, Bosi P, Trevisi P.	Front Vet Sci	10.3389/fvets.2023.1050414	2023
	Antiferroptosis therapy alleviated the development of atherosclerosis.	Yang Z, He Y, Wu D, Shi W, Liu P, Tan J, Wang R, Yu B.	MedComm (2020)	10.1002/mco2.520	2024
	Antibiofilm and Immune-Modulatory Activity of Cannabidiol and Cannabigerol in Oral Environments-In Vitro Study.	Garzon HS, Loaiza-Oliva M, Martinez-Pabon MC, Puerta-Suarez J, Tellez Corral MA, Bueno-Silva B, Suarez DR, Diaz-Baez D, Suarez LJ.	Antibiotics (Basel)	10.3390/antibiotics13040342	2024
Phylogeny	Characterization of the Fecal and Mucosa-Associated Microbiota in Dogs with Chronic Inflammatory Enteropathy.	Diaz-Reganon D, Garcia-Sancho M, Villaescusa A, Sainz A, Agulla B, Reyes-Prieto M, Rodriguez-Bertos A, Rodriguez-Franco F.	Animals (Basel)	10.3390/ani13030326	2023
	Oral bacteria in infective endocarditis requiring surgery: a retrospective analysis of 134 patients.	Deppe H, Reitberger J, Behr AV, Vitanova K, Lange R, Wantia N, Wagenpfeil S, Sculean A, Ritschl LM.	Clin Oral Investig	10.1007/s00784-022-04465-2	2022
	Fructan-sensitive children with irritable bowel syndrome have distinct gut microbiome signatures.	Chumpitazi BP, Hoffman KL, Smith DP, McMeans AR, Musaad S, Versalovic J, Petrosino JF, Shulman RJ.	Aliment Pharmacol Ther	10.1111/apt.16204	2021
	Polyphyllin B inhibited STAT3/NCOA4 pathway and restored gut microbiota to ameliorate lung tissue injury in cigarette smoke-induced mice.	Wang Q, He Z, Zhu J, Hu M, Yang L, Yang H.	BMC Biotechnol	10.1186/s12896-024-00837-6	2024
	Analysis of subgingival micro-organisms based on multi-omics and Treg/Th17 balance in type 2 diabetes with/without periodontitis.	Jiang L, Zhang J, Fang M, Qin Y, Huang Y, Tao R.	Front Microbiol	10.3389/fmicb.2022.939608	2022
	Investigation of six selected bacterial species in endo-periodontal lesions.	Didilescu AC, Rusu D, Anghel A, Nica L, Iliescu A, Greabu M, Bancescu G, Stratul SI.	Int Endod J	10.1111/j.1365-2591.2011.01974.x	2012
	Restricted feeding of weight control diets induces weight loss and affects body composition, voluntary physical activity, blood metabolites, hormones, and oxidative stress markers, and fecal metabolites and microbiota of obese cats.	Opetz DL, Oba PM, Lin CY, Ren P, Swanson KS.	J Anim Sci	10.1093/jas/skae335	2024
Phylogeny	Composition of subgingival microbiota associated with periodontitis and diagnosis of malignancy-a cross-sectional study.	Narayanan A, Soder B, Meurman J, Lundmark A, Hu YOO, Neogi U, Yucel-Lindberg T.	Front Microbiol	10.3389/fmicb.2023.1172340	2023
	Periodontal Antibodies and All-Cause and Cardiovascular Disease Mortality.	Qi J, Zihang Z, Zhang J, Park YM, Shrestha D, Jianling B, Merchant AT.	J Dent Res	10.1177/0022034519884012	2020
	Metabolic and inflammatory linkage of the chicken cecal microbiome to growth performance.	Wang L, Zhang F, Li H, Yang S, Chen X, Long S, Yang S, Yang Y, Wang Z.	Front Microbiol	10.3389/fmicb.2023.1060458	2023
	Microbiota and Nutrient Portraits of European Roe Deer (Capreolus capreolus) Rumen Contents in Characteristic Southern German Habitats.	Dahl SA, Seifert J, Camarinha-Silva A, Cheng YC, Hernandez-Arriaga A, Hudler M, Windisch W, Konig A.	Microb Ecol	10.1007/s00248-023-02308-5	2023
	Effects of the Cistanche tubulosa Aqueous Extract on the Gut Microbiota of Mice with Intestinal Disorders.	Bao X, Bai D, Liu X, Wang Y, Zeng L, Wei C, Jin W.	Evid Based Complement Alternat Med	10.1155/2021/4936970	2021
	Smoking-induced subgingival dysbiosis precedes clinical signs of periodontal disease.	Tamashiro R, Strange L, Schnackenberg K, Santos J, Gadalla H, Zhao L, Li EC, Hill E, Hill B, Sidhu GS, Kirst M, Walker C, Wang GP.	Sci Rep	10.1038/s41598-023-30203-z	2023
Enzymology	Subgingival microbial profiles of generalized aggressive and chronic periodontal diseases.	Heller D, Silva-Boghossian CM, do Souto RM, Colombo AP.	Arch Oral Biol	10.1016/j.archoralbio.2012.02.003	2012
	Adjunctive azithromycin in the treatment of aggressive periodontitis: microbiological findings of a 12-month randomized clinical trial.	Haas AN, Silva-Boghossian CM, Colombo AP, Susin C, Albandar JM, Oppermann RV, Rosing CK.	J Dent	10.1016/j.jdent.2012.03.004	2012
	The recovery of the microbial community after plaque removal depends on periodontal health status.	Li X, Yu C, Zhang B, Shan X, Mao W, Zhang Z, Wang C, Jin X, Wang J, Zhao H.	NPJ Biofilms Microbiomes	10.1038/s41522-023-00441-0	2023
Pathogenicity	Effects of Allium hookeri on gut microbiome related to growth performance in young broiler chickens.	Lee SH, Bang S, Jang HH, Lee EB, Kim BS, Kim SH, Kang SH, Lee KW, Kim DW, Kim JB, Choe JS, Park SY, Lillehoj HS.	PLoS One	10.1371/journal.pone.0226833	2020
	Salivary MRP-8/14 and the presence of periodontitis-associated bacteria in children with bonded maxillary expansion treatment.	Nemec M, Mittinger N, Bertl M, Liu E, Jonke E, Andrukhov O, Rausch-Fan X.	Clin Oral Investig	10.1007/s00784-020-03706-6	2021
	Functional Plasmon-Activated Water Increases Akkermansia muciniphila Abundance in Gut Microbiota to Ameliorate Inflammatory Bowel Disease.	Chang CC, Liu CY, Su IC, Lee YJ, Yeh HJ, Chen WC, Yu CJ, Kao WY, Liu YC, Huang CJ.	Int J Mol Sci	10.3390/ijms231911422	2022
	Necrotizing periodontal diseases in HIV-infected Brazilian patients: a clinical and microbiologic descriptive study.	Ramos MP, Ferreira SM, Silva-Boghossian CM, Souto R, Colombo AP, Noce CW, Goncalves LS.	Quintessence Int		2012
	Bacterial colonization of a power-driven water flosser during regular use. A proof-of-principle study.	Bertl K, Edlund Johansson P, Bruckmann C, Leonhard M, Davies JR, Stavropoulos A.	Clin Exp Dent Res	10.1002/cre2.393	2021
	Differently Pre-treated Rapeseed Meals Affect in vitro Swine Gut Microbiota Composition.	Long C, de Vries S, Venema K.	Front Microbiol	10.3389/fmicb.2020.570985	2020
	Personalized antibiotic selection in periodontal treatment improves clinical and microbiological outputs.	Ziemyte M, Lopez-Roldan A, Carda-Dieguez M, Reglero-Santaolaya M, Rodriguez A, Ferrer MD, Mira A.	Front Cell Infect Microbiol	10.3389/fcimb.2023.1307380	2023
Pathogenicity	Dietary inflammatory potential in relation to the gut microbiome: results from a cross-sectional study.	Zheng J, Hoffman KL, Chen JS, Shivappa N, Sood A, Browman GJ, Dirba DD, Hanash S, Wei P, Hebert JR, Petrosino JF, Schembre SM, Daniel CR.	Br J Nutr	10.1017/s0007114520001853	2020
	The Unique Seed Protein Composition of Quality Protein Popcorn Promotes Growth of Beneficial Bacteria From the Human Gut Microbiome.	Korth N, Parsons L, Van Haute MJ, Yang Q, Hurst P, Schnable JC, Holding DR, Benson AK.	Front Microbiol	10.3389/fmicb.2022.921456	2022
	Effects of Post-Ruminal Urea Supplementation during the Seasonal Period on Performance and Rumen Microbiome of Rearing Grazing Nellore Cattle.	Souza MG, Reis IA, Carvalho IPC, Porcionato MAF, Prados LF, Granja-Salcedo YT, Siqueira GR, Resende FD.	Animals (Basel)	10.3390/ani12243463	2022
	Molecular detection of in-vivo microbial contamination of metallic orthodontic brackets by checkerboard DNA-DNA hybridization.	Andrucioli MC, Nelson-Filho P, Matsumoto MA, Saraiva MC, Feres M, de Figueiredo LC, Martins LP.	Am J Orthod Dentofacial Orthop	10.1016/j.ajodo.2011.06.036	2012
	SMDI: An Index for Measuring Subgingival Microbial Dysbiosis.	Chen T, Marsh PD, Al-Hebshi NN.	J Dent Res	10.1177/00220345211035775	2022
	Infection burden, periodontal pathogens, and their interactive association with incident all-cause and Alzheimer's disease dementia in a large national survey.	Beydoun MA, Beydoun HA, Hedges DW, Erickson LD, Gale SD, Weiss J, El-Hajj ZW, Evans MK, Zonderman AB.	Alzheimers Dement	10.1002/alz.14141	2024
Pathogenicity	Impact of the Diet on the Formation of Oxidative Stress and Inflammation Induced by Bacterial Biofilm in the Oral Cavity.	Rowinska I, Szyperska-Slaska A, Zariczny P, Paslawski R, Kramkowski K, Kowalczyk P.	Materials (Basel)	10.3390/ma14061372	2021
	The Associations of Periodontopathic Bacteria and Oral Candida with Periodontal Inflamed Surface Area in Older Adults Receiving Supportive Periodontal Therapy.	Shigeishi H, Nakamura M, Oka I, Su CY, Yano K, Ishikawa M, Kaneyasu Y, Sugiyama M, Ohta K.	Diagnostics (Basel)	10.3390/diagnostics11081397	2021
	Shift of dietary carbohydrate source from milk to various solid feeds reshapes the rumen and fecal microbiome in calves.	Hartinger T, Pacifico C, Poier G, Terler G, Klevenhusen F, Zebeli Q.	Sci Rep	10.1038/s41598-022-16052-2	2022
Phylogeny	Oral Microbiome Traits of Type 1 Diabetes and Phenylketonuria Patients in Latvia.	Abola I, Gudra D, Ustinova M, Fridmanis D, Emulina DE, Skadins I, Brinkmane A, Lauga-Tunina U, Gailite L, Auzenbaha M.	Microorganisms	10.3390/microorganisms11061471	2023
	Changes of Intestinal Microflora in Colorectal Cancer Patients after Surgical Resection and Chemotherapy.	Huang R, He K, Duan X, Xiao J, Wang H, Xiang G.	Comput Math Methods Med	10.1155/2022/1940846	2022
	Astragaloside IV improves the pharmacokinetics of febuxostat in rats with hyperuricemic nephropathy by regulating urea metabolism in gut microbiota.	Zhao ZX, Tang XH, Jiang SL, Pang JQ, Xu YB, Yuan DD, Zhang LL, Liu HM, Fan Q.	Front Pharmacol	10.3389/fphar.2022.1031509	2022
	Molecular analyses of two bacterial sampling methods in ligature-induced periodontitis in rats.	Fontana CR, Grecco C, Bagnato VS, de Freitas LM, Boussios CI, Soukos NS.	Clin Exp Dent Res	10.1002/cre2.98	2018
	Prevalence of target anaerobes associated with chronic periodontitis.	Alazemi AM, Jamal W, Al Khabbaz A, Rotimi VO.	Access Microbiol	10.1099/acmi.0.000177	2020
	Influence of glycemic control on the levels of subgingival periodontal pathogens in patients with generalized chronic periodontitis and type 2 diabetes.	Miranda TS, Feres M, Retamal-Valdes B, Perez-Chaparro PJ, Maciel SS, Duarte PM.	J Appl Oral Sci	10.1590/1678-77572016-0302	2017
Pathogenicity	Heritability and recursive influence of host genetics on the rumen microbiota drive body weight variance in male Hu sheep lambs.	Wang W, Zhang Y, Zhang X, Li C, Yuan L, Zhang D, Zhao Y, Li X, Cheng J, Lin C, Zhao L, Wang J, Xu D, Yue X, Li W, Wen X, Jiang Z, Ding X, Salekdeh GH, Li F.	Microbiome	10.1186/s40168-023-01642-7	2023
Enzymology	Detection of periodontopathogenic bacteria in pregnant women by traditional anaerobic culture method and by a commercial molecular genetic method.	Urban E, Terhes G, Radnai M, Gorzo I, Nagy E.	Anaerobe	10.1016/j.anaerobe.2010.02.005	2010
	Correlation of Periodontal Bacteria with Chronic Inflammation Present in Patients with Metabolic Syndrome.	Ghitea TC.	Biomedicines	10.3390/biomedicines9111709	2021
Phylogeny	Comparison between polymerase chain reaction-based and checkerboard DNA hybridization techniques for microbial assessment of subgingival plaque samples.	Haffajee AD, Yaskell T, Torresyap G, Teles R, Socransky SS.	J Clin Periodontol	10.1111/j.1600-051x.2009.01434.x	2009
	Periodontal diseases and its association with disease activity in ankylosing spondylitis/SpA: A systematic review.	Pandey A, Rajak R, Pandey M.	Eur J Rheumatol	10.5152/eurjrheum.2020.20177	2021
	Identification of Gut Microbiome and Metabolites Associated with Acute Diarrhea in Cats.	Bai H, Liu T, Wang S, Gong W, Shen L, Zhang S, Wang Z.	Microbiol Spectr	10.1128/spectrum.00590-23	2023
Metabolism	Cellulase and Alkaline Treatment Improve Intestinal Microbial Degradation of Recalcitrant Fibers of Rapeseed Meal in Pigs.	Long C, Rosch C, de Vries S, Schols H, Venema K.	J Agric Food Chem	10.1021/acs.jafc.0c03618	2020
	Effect of Chromium Nanoparticles and Switching from a High-Fat to a Low-Fat Diet on the Cecal Microenvironment in Obese Rats.	Fotschki B, Ognik K, Cholewinska E, Grzelak-Blaszczyk K, Myszczynski K, Krauze M, Juskiewicz J.	Nutrients	10.3390/nu15143118	2023
Enzymology	Identification of mucin degraders of the human gut microbiota.	Raimondi S, Musmeci E, Candeliere F, Amaretti A, Rossi M.	Sci Rep	10.1038/s41598-021-90553-4	2021
	Microbiological profile of untreated subjects with localized aggressive periodontitis.	Faveri M, Figueiredo LC, Duarte PM, Mestnik MJ, Mayer MP, Feres M.	J Clin Periodontol	10.1111/j.1600-051x.2009.01449.x	2009
	Nonsurgical periodontal therapy with/without 980 nm diode laser in patients after myocardial infarction: a randomized clinical trial.	Samulak R, Suwala M, Dembowska E.	Lasers Med Sci	10.1007/s10103-020-03136-6	2021
	High risk of peri-implant disease in periodontal Ehlers-Danlos Syndrome. A case series.	Rinner A, Zschocke J, Schossig A, Grobner R, Strobl H, Kapferer-Seebacher I.	Clin Oral Implants Res	10.1111/clr.13373	2018
Phylogeny	Increased tooth brushing frequency is associated with reduced gingival pocket bacterial diversity in patients with intracranial aneurysms.	Pyysalo MJ, Mishra PP, Sundstrom K, Lehtimaki T, Karhunen PJ, Pessi T.	PeerJ	10.7717/peerj.6316	2019
Enzymology	Lysozyme and microbiota in relation to gingivitis and periodontitis.	Surna A, Kubilius R, Sakalauskiene J, Vitkauskiene A, Jonaitis J, Saferis V, Gleiznys A.	Med Sci Monit		2009
	Serum antibodies to periodontal bacteria as diagnostic markers of periodontitis.	Dye BA, Herrera-Abreu M, Lerche-Sehm J, Vlachojannis C, Pikdoken L, Pretzl B, Schwartz A, Papapanou PN.	J Periodontol	10.1902/jop.2009.080474	2009
	The oral microbiome and breast cancer and nonmalignant breast disease, and its relationship with the fecal microbiome in the Ghana Breast Health Study.	Wu Z, Byrd DA, Wan Y, Ansong D, Clegg-Lamptey JN, Wiafe-Addai B, Edusei L, Adjei E, Titiloye N, Dedey F, Aitpillah F, Oppong J, Vanderpuye V, Osei-Bonsu E, Dagnall CL, Jones K, Hutchinson A, Hicks BD, Ahearn TU, Shi J, Knight R, Biritwum R, Yarney J, Wiafe S, Awuah B, Nyarko K, Figueroa JD, Sinha R, Garcia-Closas M, Brinton LA, Vogtmann E.	Int J Cancer	10.1002/ijc.34145	2022
	Molecular subgroup of periodontitis revealed by integrated analysis of the microbiome and metabolome in a cross-sectional observational study.	Na HS, Kim S, Kim S, Yu Y, Kim SY, Kim HJ, Lee JY, Lee JH, Chung J.	J Oral Microbiol	10.1080/20002297.2021.1902707	2021
	Short-chain fatty acid administration via water acidifier improves feed efficiency and modulates fecal microbiota in weaned piglets.	Lingbeek MM, Borewicz K, Febery E, Han Y, Doelman J, van Kuijk SJA.	J Anim Sci	10.1093/jas/skab307	2021
	Association of Eubacterium nodatum and Treponema denticola with human periodontitis lesions.	Haffajee AD, Teles RP, Socransky SS.	Oral Microbiol Immunol	10.1111/j.1399-302x.2006.00287.x	2006
Phylogeny	Salivary and fecal microbiota: potential new biomarkers for early screening of colorectal polyps.	Zhang L, Feng Z, Li Y, Lv C, Li C, Hu Y, Fu M, Song L.	Front Microbiol	10.3389/fmicb.2023.1182346	2023
	Effect of Shenling Baizhu San on Intestinal Flora in a Rat Model of Ulcerative Colitis with Spleen Deficiency and Dampness.	Luo Y, Zhu F, Wu J, Wu J, Wu P, Liu Y.	Evid Based Complement Alternat Med	10.1155/2022/9985147	2022
	Effects of dietary replacement of soybean meal with dried distillers grains with solubles on the microbiota occupying different ecological niches in the rumen of growing Hu lambs.	Shen J, Li Z, Yu Z, Zhu W.	J Anim Sci Biotechnol	10.1186/s40104-020-00499-2	2020
	What is the influence of tonsillectomy on the level of periodontal pathogens on the tongue dorsum and in periodontal pockets.	Diener VN, Gay A, Soyka MB, Attin T, Schmidlin PR, Sahrmann P.	BMC Oral Health	10.1186/s12903-018-0521-7	2018
	Effectiveness of photodynamic therapy on the treatment of chronic periodontitis: a systematic review during 2008-2023.	Mahdizade Ari M, Amirmozafari N, Atieh Darbandi, Afifirad R, Asadollahi P, Irajian G.	Front Chem	10.3389/fchem.2024.1384344	2024
	The Role of Oral Microbiota in Intra-Oral Halitosis.	Hampelska K, Jaworska MM, Babalska ZL, Karpinski TM.	J Clin Med	10.3390/jcm9082484	2020
	Photodynamic therapy as an adjunct to non-surgical periodontal treatment: a randomized, controlled clinical trial.	Christodoulides N, Nikolidakis D, Chondros P, Becker J, Schwarz F, Rossler R, Sculean A.	J Periodontol	10.1902/jop.2008.070652	2008
	Hydroxychloride trace minerals have a positive effect on growth performance, carcass quality and impact ileal and cecal microbiota in broiler chickens.	van Kuijk SJA, Han Y, Garcia-Ruiz AI, Rodiles A.	J Anim Sci Biotechnol	10.1186/s40104-021-00553-7	2021
Pathogenicity	Antimicrobial effectiveness of an herbal mouthrinse compared with an essential oil and a chlorhexidine mouthrinse.	Haffajee AD, Yaskell T, Socransky SS.	J Am Dent Assoc	10.14219/jada.archive.2008.0222	2008
	Auricularia auricula polysaccharides attenuate obesity in mice through gut commensal Papillibacter cinnamivorans.	Zong X, Zhang H, Zhu L, Deehan EC, Fu J, Wang Y, Jin M.	J Adv Res	10.1016/j.jare.2023.08.003	2023
Pathogenicity	Aseptic-avascular osteonecrosis: local "silent inflammation" in the jawbone and RANTES/CCL5 overexpression.	Lechner J, Schuett S, von Baehr V.	Clin Cosmet Investig Dent	10.2147/ccide.s149545	2017
	Establishing the link between microbial communities in bovine liver abscesses and the gastrointestinal tract.	Pinnell LJ, Young JD, Thompson TW, Wolfe CA, Bryant TC, Nair MN, Richeson JT, Morley PS.	Anim Microbiome	10.1186/s42523-023-00278-0	2023
	Subgingival Microbiome in Pregnancy and a Potential Relationship to Early Term Birth.	Yang I, Claussen H, Arthur RA, Hertzberg VS, Geurs N, Corwin EJ, Dunlop AL.	Front Cell Infect Microbiol	10.3389/fcimb.2022.873683	2022
	A New Comorbidity in Periodontitis: Fusobacterium nucleatum and Colorectal Cancer.	Mesa F, Mesa-Lopez MJ, Egea-Valenzuela J, Benavides-Reyes C, Nibali L, Ide M, Mainas G, Rizzo M, Magan-Fernandez A.	Medicina (Kaunas)	10.3390/medicina58040546	2022
	Impact of Oral Microbiome in Periodontal Health and Periodontitis: A Critical Review on Prevention and Treatment.	Di Stefano M, Polizzi A, Santonocito S, Romano A, Lombardi T, Isola G.	Int J Mol Sci	10.3390/ijms23095142	2022
Phylogeny	Potential Roles of the Free Salivary Microbiome Dysbiosis in Periodontal Diseases.	Diao J, Yuan C, Tong P, Ma Z, Sun X, Zheng S.	Front Cell Infect Microbiol	10.3389/fcimb.2021.711282	2021
	Salivary microbiota of HIV-positive children and its correlation with HIV status, oral diseases, and total secretory IgA.	Silva-Boghossian C, Castro GF, Teles RP, De Souza IP, Colombo AP.	Int J Paediatr Dent	10.1111/j.1365-263x.2007.00864.x	2008
Phylogeny	Dysbiosis of the Subgingival Microbiome and Relation to Periodontal Disease in Association with Obesity and Overweight.	Rahman B, Al-Marzooq F, Saad H, Benzina D, Al Kawas S.	Nutrients	10.3390/nu15040826	2023
	Anaerobic Bacteria in Implants and Homologous Teeth 2-14 Years after Implantation.	Savic I, Bosnjak A, Beader N, Lovric Z, Salihagic A, Gasparac I.	Acta Stomatol Croat	10.15644/asc52/3/3	2018
	Photodynamic therapy as adjunct to non-surgical periodontal treatment in patients on periodontal maintenance: a randomized controlled clinical trial.	Chondros P, Nikolidakis D, Christodoulides N, Rossler R, Gutknecht N, Sculean A.	Lasers Med Sci	10.1007/s10103-008-0565-z	2009
Enzymology	[Microbiological and biochemical characteristics of inflammatory tissues in the periodontium].	Surna A, Sakalauskiene J, Vitkauskiene A, Saferis V.	Medicina (Kaunas)	10.3390/medicina44030026	2008
	Dental and periodontal health, and microbiological and salivary conditions in patients with or without diabetes undergoing haemodialysis.	Schmalz G, Schiffers N, Schwabe S, Vasko R, Muller GA, Haak R, Mausberg RF, Ziebolz D.	Int Dent J	10.1111/idj.12282	2017
Phylogeny	Profile of the oral microbiota from preconception to the third trimester of pregnancy and its association with oral hygiene practices.	La X, Jiang H, Chen A, Zheng H, Shen L, Chen W, Yang F, Zhang L, Cai X, Mao H, Cheng L.	J Oral Microbiol	10.1080/20002297.2022.2053389	2022
Pathogenicity	Adjunctive Antiseptic Irrigation of Periodontal Pockets: Effects on Microbial and Cytokine Profiles.	Vitt A, Babenka A, Bostrom EA, Gustafsson A, Lira Junior R, Slizen V, Sorsa T, Tervahartiala T, Buhlin K.	Dent J (Basel)	10.3390/dj8040124	2020
	In Silico Core Proteomics and Molecular Docking Approaches for the Identification of Novel Inhibitors against Streptococcus pyogenes.	Rehman A, Wang X, Ahmad S, Shahid F, Aslam S, Ashfaq UA, Alrumaihi F, Qasim M, Hashem A, Al-Hazzani AA, Abd Allah EF.	Int J Environ Res Public Health	10.3390/ijerph182111355	2021
	Saccharomyces Cerevisiae Var Boulardii CNCM I-1079 Reduces Expression of Genes Involved in Inflammatory Response in Porcine Cells Challenged by Enterotoxigenic E. Coli and Influences Bacterial Communities in an In Vitro Model of the Weaning Piglet Colon.	Gresse R, Garrido JJ, Jimenez-Marin A, Denis S, Van de Wiele T, Forano E, Blanquet-Diot S, Chaucheyras-Durand F.	Antibiotics (Basel)	10.3390/antibiotics10091101	2021
	Bacterial communities in the solid, liquid, dorsal, and ventral epithelium fractions of yak (Bos grunniens) rumen.	Ren Q, Si H, Yan X, Liu C, Ding L, Long R, Li Z, Qiu Q.	Microbiologyopen	10.1002/mbo3.963	2020
Phylogeny	Gut microbiota diversity in middle-aged and elderly patients with end-stage diabetic kidney disease.	Chen R, Zhu D, Yang R, Wu Z, Xu N, Chen F, Zhang S, Chen H, Li M, Hou K.	Ann Transl Med	10.21037/atm-22-2926	2022
	Association of periodontitis and oral microbiomes with Alzheimer's disease: A narrative systematic review.	Mao S, Huang CP, Lan H, Lau HG, Chiang CP, Chen YW.	J Dent Sci	10.1016/j.jds.2022.07.001	2022
Enzymology	Association of time under immunosuppression and different immunosuppressive medication on periodontal parameters and selected bacteria of patients after solid organ transplantation.	Schmalz G, Berisha L, Wendorff H, Widmer F, Marcinkowski A, Teschler H, Sommerwerck U, Haak R, Kollmar O, Ziebolz D.	Med Oral Patol Oral Cir Bucal	10.4317/medoral.22238	2018
	Proteome based mapping and molecular docking revealed DnaA as a potential drug target against Shigella sonnei.	Shahid F, Alghamdi YS, Mashraqi M, Khurshid M, Ashfaq UA.	Saudi J Biol Sci	10.1016/j.sjbs.2021.09.051	2022
	Akkermansia muciniphila Alters Gut Microbiota and Immune System to Improve Cardiovascular Diseases in Murine Model.	He X, Bai Y, Zhou H, Wu K.	Front Microbiol	10.3389/fmicb.2022.906920	2022
	Periodontal infection profiles in type 1 diabetes.	Lalla E, Kaplan S, Chang SM, Roth GA, Celenti R, Hinckley K, Greenberg E, Papapanou PN.	J Clin Periodontol	10.1111/j.1600-051x.2006.00996.x	2006
	Microarrays complement culture methods for identification of bacteria in endodontic infections.	Vianna ME, Horz HP, Gomes BP, Conrads G.	Oral Microbiol Immunol	10.1111/j.1399-302x.2005.00221.x	2005
	Clinical and microbiological profiles of human immunodeficiency virus (HIV)-seropositive Brazilians undergoing highly active antiretroviral therapy and HIV-seronegative Brazilians with chronic periodontitis.	Goncalves LS, Soares Ferreira SM, Souza CO, Souto R, Colombo AP.	J Periodontol	10.1902/jop.2007.060040	2007
	Early life nutrition influences susceptibility to chronic inflammatory colitis in later life.	Ley D, Desseyn JL, Gouyer V, Plet S, Tims S, Renes I, Mischke M, Gottrand F.	Sci Rep	10.1038/s41598-019-54308-6	2019
	Microbiological composition associated with interleukin-1 gene polymorphism in subjects undergoing supportive periodontal therapy.	Agerbaek MR, Lang NP, Persson GR.	J Periodontol	10.1902/jop.2006.050212	2006
	The composition of microbial communities in inflammatory periodontal diseases in young adults Tatars.	Kharitonova M, Vankov P, Abdrakhmanov A, Mamaeva E, Yakovleva G, Ilinskaya O.	AIMS Microbiol	10.3934/microbiol.2021005	2021
	Comparative Study of the Gut Microbiota Among Four Different Marine Mammals in an Aquarium.	Bai S, Zhang P, Zhang C, Du J, Du X, Zhu C, Liu J, Xie P, Li S.	Front Microbiol	10.3389/fmicb.2021.769012	2021
	Microbial role in periodontitis: Have we reached the top? Some unsung bacteria other than red complex.	Arora N, Mishra A, Chugh S.	J Indian Soc Periodontol	10.4103/0972-124x.128192	2014
	Salivary microbial profiles in relation to age, periodontal, and systemic diseases.	Lira-Junior R, Akerman S, Klinge B, Bostrom EA, Gustafsson A.	PLoS One	10.1371/journal.pone.0189374	2018
	Microbial Pathogens Associated with Proximal Dental Caries in the Primary Dentition and Their Association with Periodontal Disease in Children.	Alagl AS.	Saudi J Med Med Sci	10.4103/1658-631x.178323	2016
	Characterizing Microbiota from Sjögren's Syndrome Patients.	Singh M, Teles F, Uzel NG, Papas A.	JDR Clin Trans Res	10.1177/2380084420940623	2021
	Comparison of Periodontopathic Bacterial Profiles of Different Periodontal Disease Severity Using Multiplex Real-Time Polymerase Chain Reaction.	Choi JU, Lee JB, Kim KH, Kim S, Seol YJ, Lee YM, Rhyu IC.	Diagnostics (Basel)	10.3390/diagnostics10110965	2020
	Oral behavior, dental, periodontal and microbiological findings in patients undergoing hemodialysis and after kidney transplantation.	Schmalz G, Kauffels A, Kollmar O, Slotta JE, Vasko R, Muller GA, Haak R, Ziebolz D.	BMC Oral Health	10.1186/s12903-016-0274-0	2016
Pathogenicity	Host defense peptides: An insight into the antimicrobial world.	Gupta S, Bhatia G, Sharma A, Saxena S.	J Oral Maxillofac Pathol	10.4103/jomfp.jomfp_113_16	2018
Metabolism	Functional Characterization of COG1713 (YqeK) as a Novel Diadenosine Tetraphosphate Hydrolase Family.	Minazzato G, Gasparrini M, Amici A, Cianci M, Mazzola F, Orsomando G, Sorci L, Raffaelli N.	J Bacteriol	10.1128/jb.00053-20	2020
	Residual feed intake divergence during the preweaning period is associated with unique hindgut microbiome and metabolome profiles in neonatal Holstein heifer calves.	Elolimy A, Alharthi A, Zeineldin M, Parys C, Loor JJ.	J Anim Sci Biotechnol	10.1186/s40104-019-0406-x	2020
	A randomized clinical trial of an adjunct diode laser application for the nonsurgical treatment of peri-implantitis.	Arisan V, Karabuda ZC, Arici SV, Topcuoglu N, Kulekci G.	Photomed Laser Surg	10.1089/pho.2015.3956	2015
	Impact of Sustained Fructose Consumption on Gastrointestinal Function and Health in Wistar Rats: Glycoxidative Stress, Impaired Protein Digestion, and Shifted Fecal Microbiota.	Sanchez-Terron G, Martinez R, Ruiz J, Luna C, Estevez M.	J Agric Food Chem	10.1021/acs.jafc.3c04515	2023
	Unveiling the Bovine Epimural Microbiota Composition and Putative Function.	Pacifico C, Petri RM, Ricci S, Mickdam E, Wetzels SU, Neubauer V, Zebeli Q.	Microorganisms	10.3390/microorganisms9020342	2021
Enzymology	Gram-positive anaerobic bacilli in human periodontal disease.	Booth V, Downes J, Van den Berg J, Wade WG.	J Periodontal Res	10.1111/j.1600-0765.2004.00726.x	2004
	Characterization of the Early Life Microbiota Development and Predominant Lactobacillus Species at Distinct Gut Segments of Low- and Normal-Birth-Weight Piglets.	Li N, Huang S, Jiang L, Dai Z, Li T, Han D, Wang J.	Front Microbiol	10.3389/fmicb.2019.00797	2019
Metabolism	Detection of cfxA2, cfxA3, and cfxA6 genes in beta-lactamase producing oral anaerobes.	Binta B, Patel M.	J Appl Oral Sci	10.1590/1678-775720150469	2016
	Intraindividual variation in core microbiota in peri-implantitis and periodontitis.	Maruyama N, Maruyama F, Takeuchi Y, Aikawa C, Izumi Y, Nakagawa I.	Sci Rep	10.1038/srep06602	2014
	Perinatal Mortality Associated with Positive Postmortem Cultures for Common Oral Flora.	He M, Migliori AR, Lauro P, Sung CJ, Pinar H.	Infect Dis Obstet Gynecol	10.1155/2017/9027918	2017
Phylogeny	Effects of weight loss and feeding specially formulated diets on the body composition, blood metabolite profiles, voluntary physical activity, and fecal metabolites and microbiota of obese dogs.	Oba PM, Kelly J, Kostiuk D, Swanson KS.	J Anim Sci	10.1093/jas/skad073	2023
	Electrospun PLA Fibers Containing Metronidazole for Periodontal Disease.	Budai-Szucs M, Leber A, Cui L, Jozo M, Valyi P, Burian K, Kirschweng B, Csanyi E, Pukanszky B.	Drug Des Devel Ther	10.2147/dddt.s231748	2020
	Clinical and microbiological changes associated with the use of combined antimicrobial therapies to treat "refractory" periodontitis.	Haffajee AD, Uzel NG, Arguello EI, Torresyap G, Guerrero DM, Socransky SS.	J Clin Periodontol	10.1111/j.1600-051x.2004.00573.x	2004
	Tongue Coating Microbiota Community and Risk Effect on Gastric Cancer.	Wu J, Xu S, Xiang C, Cao Q, Li Q, Huang J, Shi L, Zhang J, Zhan Z.	J Cancer	10.7150/jca.25280	2018
Metabolism	Peripheral Blood Leukocytes Interleukin-1 Beta (IL-1beta) Cytokine Hyper-Reactivity in Chronic Periodontitis.	Sakalauskiene J, Giedrimiene D, Gleiznys D, Gleiznys A, Gleizniene R, Vitkauskiene A.	Med Sci Monit	10.12659/msm.898422	2016
	Human gut, breast, and oral microbiome in breast cancer: A systematic review and meta-analysis.	Thu MS, Chotirosniramit K, Nopsopon T, Hirankarn N, Pongpirul K.	Front Oncol	10.3389/fonc.2023.1144021	2023
	Development and Evaluation of Minocycline Hydrochloride-Loaded In Situ Cubic Liquid Crystal for Intra-Periodontal Pocket Administration.	Yang Z, Liang X, Jiang X, Guo J, Tao Y, Wang S, Cao Y, Gui S.	Molecules	10.3390/molecules23092275	2018
Pathogenicity	Gastrodin From Gastrodia elata Enhances Cognitive Function and Neuroprotection of AD Mice via the Regulation of Gut Microbiota Composition and Inhibition of Neuron Inflammation.	Fasina OB, Wang J, Mo J, Osada H, Ohno H, Pan W, Xiang L, Qi J.	Front Pharmacol	10.3389/fphar.2022.814271	2022
	Laser Assisted Non-surgical Periodontal Therapy: A Double Blind, Randomized Clinical Trial.	Everett JD, Rossmann JA, Kerns DG, Al-Hashimi I.	Open Dent J	10.2174/1874210601711010079	2017
	Sequential Modulation of the Equine Fecal Microbiota and Fibrolytic Capacity Following Two Consecutive Abrupt Dietary Changes and Bacterial Supplementation.	Collinet A, Grimm P, Julliand S, Julliand V.	Animals (Basel)	10.3390/ani11051278	2021
	Microbial profile on metallic and ceramic bracket materials.	Anhoury P, Nathanson D, Hughes CV, Socransky S, Feres M, Chou LL.	Angle Orthod	10.1043/0003-3219(2002)072<0338:mpomac>2.0.co;2	2002
	Shared microbiological and immunological patterns in periodontitis and IBD: A scoping review.	Baima G, Massano A, Squillace E, Caviglia GP, Buduneli N, Ribaldone DG, Aimetti M.	Oral Dis	10.1111/odi.13843	2022
	Composition Analysis and Feature Selection of the Oral Microbiota Associated with Periodontal Disease.	Chen WP, Chang SH, Tang CY, Liou ML, Tsai SJ, Lin YL.	Biomed Res Int	10.1155/2018/3130607	2018
	Subgingival microflora in adolescent females with polycystic ovary syndrome and its association with oral hygiene, gingivitis, and selected metabolic and hormonal parameters.	Wendland N, Opydo-Szymaczek J, Mizgier M, Jarzabek-Bielecka G.	Clin Oral Investig	10.1007/s00784-020-03456-5	2021
	Body-size Scaling is Related to Gut Microbial Diversity, Metabolism and Dietary Niche of Arboreal Folivorous Flying Squirrels.	Liu PY, Cheng AC, Huang SW, Lu HP, Oshida T, Liu W, Yu HT.	Sci Rep	10.1038/s41598-020-64801-y	2020
	Checkerboard assessments of serum antibodies to oral microbiota as surrogate markers of clinical periodontal status.	Papapanou PN, Neiderud AM, Sandros J, Dahlen G.	J Clin Periodontol	10.1034/j.1600-051x.2001.280116.x	2001
Pathogenicity	A Novel Antidiabetic Monomers Combination Alleviates Insulin Resistance Through Bacteria-Cometabolism-Inflammation Responses.	Han L, Zhao LH, Zhang ML, Li HT, Gao ZZ, Zheng XJ, Wang XM, Wu HR, Zheng YJ, Jiang XT, Ding QY, Yang HY, Jia WP, Tong XL.	Front Microbiol	10.3389/fmicb.2020.00173	2020
	Long-term effects of early-life rumen microbiota modulation on dairy cow production performance and methane emissions.	Huuki H, Tapio M, Mantysaari P, Negussie E, Ahvenjarvi S, Vilkki J, Vanhatalo A, Tapio I.	Front Microbiol	10.3389/fmicb.2022.983823	2022
	Saliva microbiome, dietary, and genetic markers are associated with suicidal ideation in university students.	Ahrens AP, Sanchez-Padilla DE, Drew JC, Oli MW, Roesch LFW, Triplett EW.	Sci Rep	10.1038/s41598-022-18020-2	2022
	Subgingival microbiome in patients with healthy and ailing dental implants.	Zheng H, Xu L, Wang Z, Li L, Zhang J, Zhang Q, Chen T, Lin J, Chen F.	Sci Rep	10.1038/srep10948	2015
Pathogenicity	Anti-Inflammatory Activities of Pentaherbs formula and Its Influence on Gut Microbiota in Allergic Asthma.	Tsang MS, Cheng SW, Zhu J, Atli K, Chan BC, Liu D, Chan HY, Sun X, Chu IM, Hon KL, Lam CW, Shaw PC, Leung PC, Wong CK.	Molecules	10.3390/molecules23112776	2018
	The Microbiome of Peri-Implantitis: A Systematic Review and Meta-Analysis.	Sahrmann P, Gilli F, Wiedemeier DB, Attin T, Schmidlin PR, Karygianni L.	Microorganisms	10.3390/microorganisms8050661	2020
	Manganese Oxide Nanozyme-Doped Diatom for Safe and Efficient Treatment of Peri-Implantitis.	Lee EH, Lee SW, Seo Y, Deng YH, Lim YJ, Kwon HB, Park K, Kong H, Kim MJ.	ACS Appl Mater Interfaces	10.1021/acsami.2c05166	2022
Enzymology	Effect of periodontal therapy on the subgingival microbiota over a 2-year monitoring period. I. Overall effect and kinetics of change.	Socransky SS, Haffajee AD, Teles R, Wennstrom JL, Lindhe J, Bogren A, Hasturk H, van Dyke T, Wang X, Goodson JM.	J Clin Periodontol	10.1111/jcpe.12117	2013
Pathogenicity	Porphyromonas gingivalis Placental Atopobiosis and Inflammatory Responses in Women With Adverse Pregnancy Outcomes.	Gomez LA, De Avila J, Castillo DM, Montenegro DA, Trujillo TG, Suarez LJ, Lafaurie GI.	Front Microbiol	10.3389/fmicb.2020.591626	2020
	The interaction among obesity, Type 2 diabetes mellitus, and periodontitis in Vietnamese patients.	Pham TAV, Tran TTP.	Clin Exp Dent Res	10.1002/cre2.106	2018
	Prediction of Chronic Periodontitis Severity Using Machine Learning Models Based On Salivary Bacterial Copy Number.	Kim EH, Kim S, Kim HJ, Jeong HO, Lee J, Jang J, Joo JY, Shin Y, Kang J, Park AK, Lee JY, Lee S.	Front Cell Infect Microbiol	10.3389/fcimb.2020.571515	2020
	Identification of subgingival periodontal pathogens and association with the severity of periodontitis in patients with chronic kidney diseases: a cross-sectional study.	Ismail FB, Ismail G, Dumitriu AS, Baston C, Berbecar V, Jurubita R, Andronesi A, Dumitriu HT, Sinescu I, Sinescu I.	Biomed Res Int	10.1155/2015/370314	2015
Phylogeny	Diversity of oral asaccharolytic Eubacterium species in periodontitis--identification of novel phylotypes representing uncultivated taxa.	Spratt DA, Weightman AJ, Wade WG.	Oral Microbiol Immunol	10.1034/j.1399-302x.1999.140107.x	1999
	Plaque retention on elastomeric ligatures. An in vivo study.	Condo R, Casaglia A, Condo SG, Cerroni L.	Oral Implantol (Rome)		2012
	Efficacy of metformin in the management of periodontitis: A systematic review and meta-analysis.	Najeeb S, Zafar MS, Khurshid Z, Zohaib S, Madathil SA, Mali M, Almas K.	Saudi Pharm J	10.1016/j.jsps.2018.02.029	2018
	Salivary pH: A diagnostic biomarker.	Baliga S, Muglikar S, Kale R.	J Indian Soc Periodontol	10.4103/0972-124x.118317	2013
	Restriction fragment-length polymorphism analysis of 16S rDNA from oral asaccharolytic Eubacterium species amplified by polymerase chain reaction.	Sato T, Sato M, Matsuyama J, Kalfas S, Sundqvist G, Hoshino E.	Oral Microbiol Immunol	10.1111/j.1399-302x.1998.tb00746.x	1998
Pathogenicity	Change in subgingival microbial profiles in adult periodontitis subjects receiving either systemically-administered amoxicillin or metronidazole.	Feres M, Haffajee AD, Allard K, Som S, Socransky SS.	J Clin Periodontol	10.1034/j.1600-051x.2001.028007597.x	2001
	Microbiological parameters associated with IL-1 gene polymorphisms in periodontitis patients.	Socransky SS, Haffajee AD, Smith C, Duff GW.	J Clin Periodontol	10.1034/j.1600-051x.2000.027011810.x	2000
Pathogenicity	Effects of a Postbiotic and Prebiotic Mixture on Suckling Rats' Microbiota and Immunity.	Morales-Ferre C, Azagra-Boronat I, Massot-Cladera M, Tims S, Knipping K, Garssen J, Knol J, Franch A, Castell M, Rodriguez-Lagunas MJ, Perez-Cano FJ.	Nutrients	10.3390/nu13092975	2021
	Serum IgG antibody levels to periodontal microbiota are associated with incident Alzheimer disease.	Noble JM, Scarmeas N, Celenti RS, Elkind MS, Wright CB, Schupf N, Papapanou PN.	PLoS One	10.1371/journal.pone.0114959	2014
Phylogeny	"Checkerboard" assessments of periodontal microbiota and serum antibody responses: a case-control study.	Papapanou PN, Neiderud AM, Papadimitriou A, Sandros J, Dahlen G.	J Periodontol	10.1902/jop.2000.71.6.885	2000
	The gut microbiome and Alzheimer's disease: Complex and bidirectional interactions.	Tarawneh R, Penhos E.	Neurosci Biobehav Rev	10.1016/j.neubiorev.2022.104814	2022
	Parvimonas micra can translocate from the subgingival sulcus of the human oral cavity to colorectal adenocarcinoma.	Conde-Perez K, Buetas E, Aja-Macaya P, Martin-De Arribas E, Iglesias-Corras I, Trigo-Tasende N, Nasser-Ali M, Estevez LS, Rumbo-Feal S, Otero-Alen B, Noguera JF, Concha A, Pardinas-Lopez S, Carda-Dieguez M, Gomez-Randulfe I, Martinez-Lago N, Ladra S, Aparicio LA, Bou G, Mira A, Vallejo JA, Poza M.	Mol Oncol	10.1002/1878-0261.13506	2024
	Changes in the subgingival biofilm composition after coronally positioned flap.	Lima JA, Santos VR, Feres M, de Figueiredo LC, Duarte PM.	J Appl Oral Sci	10.1590/s1678-77572011000100014	2011
Pathogenicity	Chlamydia pneumoniae is present in the dental plaque of periodontitis patients and stimulates an inflammatory response in gingival epithelial cells.	Almeida-da-Silva CLC, Alpagot T, Zhu Y, Lee SS, Roberts BP, Hung SC, Tang N, Ojcius DM.	Microb Cell	10.15698/mic2019.04.674	2019
	Relations of Psychosocial Factors and Cortisol with Periodontal and Bacterial Parameters: A Prospective Clinical Study in 30 Patients with Periodontitis Before and After Non-Surgical Treatment.	Dubar M, Clerc-Urmes I, Baumann C, Clement C, Alauzet C, Bisson C.	Int J Environ Res Public Health	10.3390/ijerph17207651	2020
Phylogeny	Identification of Salivary Microbiota and Its Association With Host Inflammatory Mediators in Periodontitis.	Lundmark A, Hu YOO, Huss M, Johannsen G, Andersson AF, Yucel-Lindberg T.	Front Cell Infect Microbiol	10.3389/fcimb.2019.00216	2019
	Periodontitis is associated with significant hepatic fibrosis in patients with non-alcoholic fatty liver disease.	Alazawi W, Bernabe E, Tai D, Janicki T, Kemos P, Samsuddin S, Syn WK, Gillam D, Turner W.	PLoS One	10.1371/journal.pone.0185902	2017
	Relationship between invasion of the periodontium by periodontal pathogens and periodontal disease: a systematic review.	Mendes L, Azevedo NF, Felino A, Pinto MG.	Virulence	10.4161/21505594.2014.984566	2015
	Microbial complexes in subgingival plaque.	Socransky SS, Haffajee AD, Cugini MA, Smith C, Kent RL.	J Clin Periodontol	10.1111/j.1600-051x.1998.tb02419.x	1998
Enzymology	Eubacterium nodatum mimics Actinomyces in intrauterine device-associated infections and other settings within the female genital tract.	Hill GB.	Obstet Gynecol		1992
	Relationship of clinical and microbiological variables in patients with type 1 diabetes mellitus and periodontitis.	Sakalauskiene J, Kubilius R, Gleiznys A, Vitkauskiene A, Ivanauskiene E, Saferis V.	Med Sci Monit	10.12659/msm.890879	2014
	Combination of Zinc Hyaluronate and Metronidazole in a Lipid-Based Drug Delivery System for the Treatment of Periodontitis.	Leber A, Budai-Szucs M, Urban E, Valyi P, Gacsi A, Berko S, Kovacs A, Csanyi E.	Pharmaceutics	10.3390/pharmaceutics11030142	2019
	Effects of Bifidobacterium probiotic on the treatment of chronic periodontitis: A randomized clinical trial.	Invernici MM, Salvador SL, Silva PHF, Soares MSM, Casarin R, Palioto DB, Souza SLS, Taba M, Novaes AB, Furlaneto FAC, Messora MR.	J Clin Periodontol	10.1111/jcpe.12995	2018
	Microbiota-based Signature of Gingivitis Treatments: A Randomized Study.	Huang S, Li Z, He T, Bo C, Chang J, Li L, He Y, Liu J, Charbonneau D, Li R, Xu J.	Sci Rep	10.1038/srep24705	2016
	Calibrated interdental brushing for the prevention of periodontal pathogens infection in young adults - a randomized controlled clinical trial.	Bourgeois D, Bravo M, Llodra JC, Inquimbert C, Viennot S, Dussart C, Carrouel F.	Sci Rep	10.1038/s41598-019-51938-8	2019
	Cytokines in gingivocrevicular fluid of rheumatoid arthritis patients: A review of the literature.	Rahajoe PS, Smit MJ, Kertia N, Westra J, Vissink A.	Oral Dis	10.1111/odi.13145	2019
	Chemical composition of Eubacterium nodatum cell wall peptidoglycan.	Severin AI, Kokeguchi S, Kato K.	Arch Microbiol	10.1007/bf00406564	1989
	The gingival immune response to periodontal pathogens in juvenile periodontitis.	Hall ER, Martin SA, Suzuki JB, Falkler WA.	Oral Microbiol Immunol	10.1111/j.1399-302x.1994.tb00282.x	1994
	Microbiomes of Endodontic-Periodontal Lesions before and after Chemomechanical Preparation.	Gomes BP, Berber VB, Kokaras AS, Chen T, Paster BJ.	J Endod	10.1016/j.joen.2015.08.022	2015
	Microbial risk markers for childhood caries in pediatricians' offices.	Kanasi E, Johansson I, Lu SC, Kressin NR, Nunn ME, Kent R, Tanner AC.	J Dent Res	10.1177/0022034509360010	2010
	Association Between Serum Antibodies to Periodontal Bacteria and Rheumatoid Factor in the Third National Health and Nutrition Examination Survey.	Goh CE, Kopp J, Papapanou PN, Molitor JA, Demmer RT.	Arthritis Rheumatol	10.1002/art.39724	2016
	Coaggregation studies of the Eubacterium species.	George KS, Falkler WA.	Oral Microbiol Immunol	10.1111/j.1399-302x.1992.tb00590.x	1992
Phylogeny	Microbiologic profile of endodontic infections from HIV- and HIV+ patients using multiple-displacement amplification and checkerboard DNA-DNA hybridization.	Brito LC, Sobrinho AP, Teles RP, Socransky SS, Haffajee AD, Vieira LQ, Teles FR.	Oral Dis	10.1111/j.1601-0825.2012.01908.x	2012
	Weaning-associated feed deprivation stress causes microbiota disruptions in a novel mucin-containing in vitro model of the piglet colon (MPigut-IVM).	Gresse R, Chaucheyras-Durand F, Denis S, Beaumont M, Van de Wiele T, Forano E, Blanquet-Diot S.	J Anim Sci Biotechnol	10.1186/s40104-021-00584-0	2021
	Comparative Metatranscriptomics of Periodontitis Supports a Common Polymicrobial Shift in Metabolic Function and Identifies Novel Putative Disease-Associated ncRNAs.	Ram-Mohan N, Meyer MM.	Front Microbiol	10.3389/fmicb.2020.00482	2020
Pathogenicity	Use of ethanol extracts of Terminalia chebula to prevent periodontal disease induced by dental plaque bacteria.	Lee J, Nho YH, Yun SK, Hwang YS.	BMC Complement Altern Med	10.1186/s12906-017-1619-1	2017
	Changes in the Solid-, Liquid-, and Epithelium-Associated Bacterial Communities in the Rumen of Hu Lambs in Response to Dietary Urea Supplementation.	Li Z, Mu C, Xu Y, Shen J, Zhu W.	Front Microbiol	10.3389/fmicb.2020.00244	2020
	The arginine-deiminase enzymatic system on gingivitis: preliminary pediatric study.	Ierardo G, Bossu M, Tarantino D, Trinchieri V, Sfasciotti GL, Polimeni A.	Ann Stomatol (Roma)		2010
Phylogeny	Newly identified pathogens associated with periodontitis: a systematic review.	Perez-Chaparro PJ, Goncalves C, Figueiredo LC, Faveri M, Lobao E, Tamashiro N, Duarte P, Feres M.	J Dent Res	10.1177/0022034514542468	2014
Phylogeny	Levels of Candidate Periodontal Pathogens in Subgingival Biofilm.	Oliveira RR, Fermiano D, Feres M, Figueiredo LC, Teles FR, Soares GM, Faveri M.	J Dent Res	10.1177/0022034516634619	2016
Enzymology	Bacterial profile of aggressive periodontitis in Morocco: a cross-sectional study.	Chahboun H, Arnau MM, Herrera D, Sanz M, Ennibi OK.	BMC Oral Health	10.1186/s12903-015-0006-x	2015
	Interplay Among the Oral Microbiome, Oral Cavity Conditions, the Host Immune Response, Diabetes Mellitus, and Its Associated-Risk Factors-An Overview.	Negrini TC, Carlos IZ, Duque C, Caiaffa KS, Arthur RA.	Front Oral Health	10.3389/froh.2021.697428	2021
	Unique subgingival microbiota associated with periodontitis in cirrhosis patients.	Jensen A, Ladegaard Gronkjaer L, Holmstrup P, Vilstrup H, Kilian M.	Sci Rep	10.1038/s41598-018-28905-w	2018
	Eubacterium callanderi bacteremia: report of the first case.	Thiolas A, Bollet C, Gasmi M, Drancourt M, Raoult D.	J Clin Microbiol	10.1128/jcm.41.5.2235-2236.2003	2003
	Growth stimulation of Treponema denticola by periodontal microorganisms.	ter Steeg PF, van der Hoeven JS.	Antonie Van Leeuwenhoek	10.1007/bf00403156	1990
Phylogeny	Factors affecting human supragingival biofilm composition. II. Tooth position.	Haffajee AD, Teles RP, Patel MR, Song X, Yaskell T, Socransky SS.	J Periodontal Res	10.1111/j.1600-0765.2008.01155.x	2009
Enzymology	Optimization of quantitative polymerase chain reactions for detection and quantification of eight periodontal bacterial pathogens.	Decat E, Cosyn J, De Bruyn H, Miremadi R, Saerens B, Van Mechelen E, Vermeulen S, Vaneechoutte M, Deschaght P.	BMC Res Notes	10.1186/1756-0500-5-664	2012
Phylogeny	Distinct interacting core taxa in co-occurrence networks enable discrimination of polymicrobial oral diseases with similar symptoms.	Shiba T, Watanabe T, Kachi H, Koyanagi T, Maruyama N, Murase K, Takeuchi Y, Maruyama F, Izumi Y, Nakagawa I.	Sci Rep	10.1038/srep30997	2016
	Predictive, preventive, personalised and participatory periodontology: 'the 5Ps age' has already started.	Cafiero C, Matarasso S.	EPMA J	10.1186/1878-5085-4-16	2013
	The Porphyromonas gingivalis/Host Interactome Shows Enrichment in GWASdb Genes Related to Alzheimer's Disease, Diabetes and Cardiovascular Diseases.	Carter CJ, France J, Crean S, Singhrao SK.	Front Aging Neurosci	10.3389/fnagi.2017.00408	2017
Phylogeny	Comparisons of subgingival microbial profiles of refractory periodontitis, severe periodontitis, and periodontal health using the human oral microbe identification microarray.	Colombo AP, Boches SK, Cotton SL, Goodson JM, Kent R, Haffajee AD, Socransky SS, Hasturk H, Van Dyke TE, Dewhirst F, Paster BJ.	J Periodontol	10.1902/jop.2009.090185	2009
	Distinguishing the Signals of Gingivitis and Periodontitis in Supragingival Plaque: a Cross-Sectional Cohort Study in Malawi.	Shaw L, Harjunmaa U, Doyle R, Mulewa S, Charlie D, Maleta K, Callard R, Walker AS, Balloux F, Ashorn P, Klein N.	Appl Environ Microbiol	10.1128/aem.01756-16	2016
	Microbial profiles at baseline and not the use of antibiotics determine the clinical outcome of the treatment of chronic periodontitis.	Bizzarro S, Laine ML, Buijs MJ, Brandt BW, Crielaard W, Loos BG, Zaura E.	Sci Rep	10.1038/srep20205	2016
	Periodontal disease as a risk marker in coronary heart disease and chronic kidney disease.	Fisher MA, Borgnakke WS, Taylor GW.	Curr Opin Nephrol Hypertens	10.1097/mnh.0b013e32833eda38	2010
	A Filifactor alocis-centered co-occurrence group associates with periodontitis across different oral habitats.	Chen H, Liu Y, Zhang M, Wang G, Qi Z, Bridgewater L, Zhao L, Tang Z, Pang X.	Sci Rep	10.1038/srep09053	2015
Genetics	Correlation network analysis applied to complex biofilm communities.	Duran-Pinedo AE, Paster B, Teles R, Frias-Lopez J.	PLoS One	10.1371/journal.pone.0028438	2011
	Quantification by qPCR of Pathobionts in Chronic Periodontitis: Development of Predictive Models of Disease Severity at Site-Specific Level.	Tomas I, Regueira-Iglesias A, Lopez M, Arias-Bujanda N, Novoa L, Balsa-Castro C, Tomas M.	Front Microbiol	10.3389/fmicb.2017.01443	2017
	Relationships among interleukin-6, tumor necrosis factor-alpha, adipokines, vitamin D, and chronic periodontitis.	Teles FR, Teles RP, Martin L, Socransky SS, Haffajee AD.	J Periodontol	10.1902/jop.2011.110346	2012
	S-nitrosoglutathione accelerates recovery from 5-fluorouracil-induced oral mucositis.	Skeff MA, Brito GA, de Oliveira MG, Braga CM, Cavalcante MM, Baldim V, Holanda-Afonso RC, Silva-Boghossian CM, Colombo AP, Ribeiro RA, Moura-Neto V, Leitao RF.	PLoS One	10.1371/journal.pone.0113378	2014
Pathogenicity	Periodontitis in pregnant baboons: systemic inflammation and adaptive immune responses and pregnancy outcomes in a baboon model.	Ebersole JL, Holt SC, Cappelli D.	J Periodontal Res	10.1111/jre.12099	2014
Phylogeny	Early microbial succession in redeveloping dental biofilms in periodontal health and disease.	Teles FR, Teles RP, Uzel NG, Song XQ, Torresyap G, Socransky SS, Haffajee AD.	J Periodontal Res	10.1111/j.1600-0765.2011.01409.x	2012
	Filifactor alocis--a new emerging periodontal pathogen.	Aruni AW, Mishra A, Dou Y, Chioma O, Hamilton BN, Fletcher HM.	Microbes Infect	10.1016/j.micinf.2015.03.011	2015
Metabolism	Relationships among gingival crevicular fluid biomarkers, clinical parameters of periodontal disease, and the subgingival microbiota.	Teles R, Sakellari D, Teles F, Konstantinidis A, Kent R, Socransky S, Haffajee A.	J Periodontol	10.1902/jop.2009.090397	2010
Metabolism	Characterization of a novel family of fibronectin-binding proteins with M23 peptidase domains from Treponema denticola.	Bamford CV, Francescutti T, Cameron CE, Jenkinson HF, Dymock D.	Mol Oral Microbiol	10.1111/j.2041-1014.2010.00584.x	2010
Pathogenicity	The Influence of Diet on Oxidative Stress and Inflammation Induced by Bacterial Biofilms in the Human Oral Cavity.	Rowinska I, Szyperska-Slaska A, Zariczny P, Paslawski R, Kramkowski K, Kowalczyk P.	Materials (Basel)	10.3390/ma14061444	2021
	Porphyromonas gingivalis: where do we stand in our battle against this oral pathogen?	Howard KC, Gonzalez OA, Garneau-Tsodikova S.	RSC Med Chem	10.1039/d0md00424c	2021
Genetics	Changes in the rumen epimural bacterial diversity of beef cattle as affected by diet and induced ruminal acidosis.	Petri RM, Schwaiger T, Penner GB, Beauchemin KA, Forster RJ, McKinnon JJ, McAllister TA.	Appl Environ Microbiol	10.1128/aem.03983-12	2013
	Functional signatures of oral dysbiosis during periodontitis progression revealed by microbial metatranscriptome analysis.	Yost S, Duran-Pinedo AE, Teles R, Krishnan K, Frias-Lopez J.	Genome Med	10.1186/s13073-015-0153-3	2015
	Periodontitis in pregnancy: clinical and serum antibody observations from a baboon model of ligature-induced disease.	Cappelli D, Steffen MJ, Holt SC, Ebersole JL.	J Periodontol	10.1902/jop.2009.080199	2009
Enzymology	Characteristics and sites of infection of Eubacterium nodatum, Eubacterium timidum, Eubacterium brachy, and other asaccharolytic eubacteria.	Hill GB, Ayers OM, Kohan AP.	J Clin Microbiol	10.1128/jcm.25.8.1540-1545.1987	1987
Metabolism	Relationships between subgingival microbiota and GCF biomarkers in generalized aggressive periodontitis.	Teles RP, Gursky LC, Faveri M, Rosa EA, Teles FR, Feres M, Socransky SS, Haffajee AD.	J Clin Periodontol	10.1111/j.1600-051x.2010.01534.x	2010
	Clinical and microbiological benefits of strict supragingival plaque control as part of the active phase of periodontal therapy.	Feres M, Gursky LC, Faveri M, Tsuzuki CO, Figueiredo LC.	J Clin Periodontol	10.1111/j.1600-051x.2009.01471.x	2009
	The effect of apically repositioned flap surgery on clinical parameters and the composition of the subgingival microbiota: 12-month data.	Levy RM, Giannobile WV, Feres M, Haffajee AD, Smith C, Socransky SS.	Int J Periodontics Restorative Dent		2002
	A consortium of Aggregatibacter actinomycetemcomitans, Streptococcus parasanguinis, and Filifactor alocis is present in sites prior to bone loss in a longitudinal study of localized aggressive periodontitis.	Fine DH, Markowitz K, Fairlie K, Tischio-Bereski D, Ferrendiz J, Furgang D, Paster BJ, Dewhirst FE.	J Clin Microbiol	10.1128/jcm.00729-13	2013
	Serum antibody reactive with predominant organisms in the subgingival flora of young adults with generalized severe periodontitis.	Tew JG, Marshall DR, Moore WE, Best AM, Palcanis KG, Ranney RR.	Infect Immun	10.1128/iai.48.2.303-311.1985	1985
Phylogeny	A collection of bacterial isolates from the pig intestine reveals functional and taxonomic diversity.	Wylensek D, Hitch TCA, Riedel T, Afrizal A, Kumar N, Wortmann E, Liu T, Devendran S, Lesker TR, Hernandez SB, Heine V, Buhl EM, M D'Agostino P, Cumbo F, Fischoder T, Wyschkon M, Looft T, Parreira VR, Abt B, Doden HL, Ly L, Alves JMP, Reichlin M, Flisikowski K, Suarez LN, Neumann AP, Suen G, de Wouters T, Rohn S, Lagkouvardos I, Allen-Vercoe E, Sproer C, Bunk B, Taverne-Thiele AJ, Giesbers M, Wells JM, Neuhaus K, Schnieke A, Cava F, Segata N, Elling L, Strowig T, Ridlon JM, Gulder TAM, Overmann J, Clavel T.	Nat Commun	10.1038/s41467-020-19929-w	2020
Phylogeny	PCR-based identification of bacteria associated with endodontic infections.	Fouad AF, Barry J, Caimano M, Clawson M, Zhu Q, Carver R, Hazlett K, Radolf JD.	J Clin Microbiol	10.1128/jcm.40.9.3223-3231.2002	2002
Phylogeny	Taxonomic characterization of Mogibacterium diversum sp. nov. and Mogibacterium neglectum sp. nov., isolated from human oral cavities.	Nakazawa F, Poco SE, Sato M, Ikeda T, Kalfas S, Sundqvist G, Hoshino E.	Int J Syst Evol Microbiol	10.1099/00207713-52-1-115	2002
Phylogeny	Description of Mogibacterium pumilum gen. nov., sp. nov. and Mogibacterium vescum gen. nov., sp. nov., and reclassification of Eubacterium timidum (Holdeman et al. 1980) as Mogibacterium timidum gen. nov., comb. nov.	Nakazawa F, Sato M, Poco SE, Hashimura T, Ikeda T, Kalfas S, Sundqvist G, Hoshino E.	Int J Syst Evol Microbiol	10.1099/00207713-50-2-679	2000
Phylogeny	Cryptobacterium curtum gen. nov., sp. nov., a new genus of gram-positive anaerobic rod isolated from human oral cavities.	Nakazawa F, Poco SE, Ikeda T, Sato M, Kalfas S, Sundqvist G, Hoshino E.	Int J Syst Bacteriol	10.1099/00207713-49-3-1193	1999
Phylogeny	Phylogeny of oral asaccharolytic Eubacterium species determined by 16S ribosomal DNA sequence comparison and proposal of Eubacterium infirmum sp. nov. and Eubacterium tardum sp. nov.	Cheeseman SL, Hiom SJ, Weightman AJ, Wade WG.	Int J Syst Bacteriol	10.1099/00207713-46-4-957	1996

References

#1563	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3993
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#34564	; Curators of the CIP;
#46403	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15996
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68380	Automatically annotated from API rID32A .
#68381	Automatically annotated from API rID32STR .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#121321	Collection of Institut Pasteur ; Curators of the CIP; CIP 104213
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Eubacterium nodatum (DSM 3993, ATCC 33099, CCUG 15996)

Name and taxonomic classification