Eubacterium oxidoreducens (DSM 3217, G41)

Name: Eubacterium oxidoreducens (DSM 3217, G41)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5438

Type strain

Strain Designation G41

Culture col. no. DSM 3217 G41

NCBI tax ID(s) 1732

Special Collections DSMZ

History <- M.P. Bryant, G41

Links

Eubacterium oxidoreducens G41 is an anaerobe bacterium that was isolated from rumen of cattle.

anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 47701

DSM 3217,ATCC 43585

@ref 20215

Last LPSN update 2026-02-09 11:18:58

Domain Bacteria

Phylum Bacillota

Class Clostridia

Order Eubacteriales

Family Eubacteriaceae

Genus Eubacterium

Species Eubacterium oxidoreducens

Full scientific name Eubacterium oxidoreducens corrig. Krumholz and Bryant 1986

Synonyms (1)

Eubacterium oxidoreducans

Morphology

Colony morphology

1311

Incubation period3-7 days

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
1311	EUBACTERIUM OXIDOREDUCENS MEDIUM (DSMZ Medium 335)		Medium recipe at MediaDive	Name: EUBACTERIUM OXIDOREDUCENS MEDIUM (DSMZ Medium 335) Composition: Crotonic acid 4.98504 g/l NaHCO3 4.98504 g/l Yeast extract 1.99402 g/l KH2PO4 0.498504 g/l NH4Cl 0.398804 g/l NaCl 0.398804 g/l MgCl2 x 6 H2O 0.329013 g/l L-Cysteine HCl x H2O 0.239282 g/l Na2S x 9 H2O 0.0777667 g/l CaCl2 x 2 H2O 0.0498504 g/l HCl 0.00249252 g/l FeCl2 x 4 H2O 0.00149551 g/l Resazurin 0.000997012 g/l Pyridoxine hydrochloride 0.000299103 g/l Thiamine-HCl x 2 H2O 0.000199402 g/l Nicotinic acid 0.000199402 g/l CoCl2 x 6 H2O 0.000189432 g/l MnCl2 x 4 H2O 9.97009e-05 g/l Calcium pantothenate 9.97009e-05 g/l Vitamin B12 9.97009e-05 g/l p-Aminobenzoic acid 7.97607e-05 g/l ZnCl2 6.97906e-05 g/l Na2MoO4 x 2 H2O 3.58923e-05 g/l NiCl2 x 6 H2O 2.39282e-05 g/l D-(+)-biotin 1.99402e-05 g/l H3BO3 5.98205e-06 g/l CuCl2 x 2 H2O 1.99402e-06 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
1311	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
1311	anaerobe
125438	anaerobe	94.824
125439	anaerobe	99.8

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	adipate degradation	100	2 of 2
66794	starch degradation	100	10 of 10
66794	C4 and CAM-carbon fixation	100	8 of 8
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	coenzyme A metabolism	100	4 of 4
66794	teichoic acid biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	palmitate biosynthesis	90.91	20 of 22
66794	aspartate and asparagine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	CO2 fixation in Crenarchaeota	88.89	8 of 9
66794	gluconeogenesis	87.5	7 of 8
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	propanol degradation	85.71	6 of 7
66794	peptidoglycan biosynthesis	80	12 of 15
66794	hydrogen production	80	4 of 5
66794	threonine metabolism	80	8 of 10
66794	cellulose degradation	80	4 of 5
66794	photosynthesis	78.57	11 of 14
66794	tetrahydrofolate metabolism	78.57	11 of 14
66794	NAD metabolism	77.78	14 of 18
66794	serine metabolism	77.78	7 of 9
66794	d-mannose degradation	77.78	7 of 9
66794	valine metabolism	77.78	7 of 9
66794	phenylalanine metabolism	76.92	10 of 13
66794	glycogen biosynthesis	75	3 of 4
66794	acetate fermentation	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	ppGpp biosynthesis	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	formaldehyde oxidation	66.67	2 of 3
66794	glycolate and glyoxylate degradation	66.67	4 of 6
66794	pyrimidine metabolism	66.67	30 of 45
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	acetoin degradation	66.67	2 of 3
66794	L-lactaldehyde degradation	66.67	2 of 3
66794	methane metabolism	66.67	2 of 3
66794	purine metabolism	65.96	62 of 94
66794	alanine metabolism	65.52	19 of 29
66794	glutamate and glutamine metabolism	64.29	18 of 28
66794	heme metabolism	64.29	9 of 14
66794	citric acid cycle	64.29	9 of 14
66794	isoleucine metabolism	62.5	5 of 8
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	62.5	5 of 8
66794	glycogen metabolism	60	3 of 5
66794	methylglyoxal degradation	60	3 of 5
66794	glycine betaine biosynthesis	60	3 of 5
66794	ubiquinone biosynthesis	57.14	4 of 7
66794	lysine metabolism	57.14	24 of 42
66794	degradation of sugar alcohols	56.25	9 of 16
66794	molybdenum cofactor biosynthesis	55.56	5 of 9
66794	histidine metabolism	55.17	16 of 29
66794	proline metabolism	54.55	6 of 11
66794	oxidative phosphorylation	53.85	49 of 91
66794	methionine metabolism	53.85	14 of 26
66794	urea cycle	53.85	7 of 13
66794	glycolysis	52.94	9 of 17
66794	tryptophan metabolism	52.63	20 of 38
66794	dolichol and dolichyl phosphate biosynthesis	50	1 of 2
66794	ethanol fermentation	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	biotin biosynthesis	50	2 of 4
66794	propionate fermentation	50	5 of 10
66794	toluene degradation	50	2 of 4
66794	aminopropanol phosphate biosynthesis	50	1 of 2
66794	non-pathway related	50	19 of 38
66794	glutathione metabolism	50	7 of 14
66794	phenylmercury acetate degradation	50	1 of 2
66794	sulfopterin metabolism	50	2 of 4
66794	cysteine metabolism	50	9 of 18
66794	lipid metabolism	48.39	15 of 31
66794	sulfate reduction	46.15	6 of 13
66794	pentose phosphate pathway	45.45	5 of 11
66794	nitrate assimilation	44.44	4 of 9
66794	degradation of hexoses	44.44	8 of 18
66794	vitamin B12 metabolism	44.12	15 of 34
66794	cardiolipin biosynthesis	42.86	3 of 7
66794	arginine metabolism	41.67	10 of 24
66794	glycine metabolism	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	leucine metabolism	38.46	5 of 13
66794	isoprenoid biosynthesis	38.46	10 of 26
66794	vitamin B1 metabolism	38.46	5 of 13
66794	ketogluconate metabolism	37.5	3 of 8
66794	metabolism of disaccharids	36.36	4 of 11
66794	phenol degradation	35	7 of 20
66794	polyamine pathway	34.78	8 of 23
66794	pantothenate biosynthesis	33.33	2 of 6
66794	allantoin degradation	33.33	3 of 9
66794	IAA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	lipid A biosynthesis	33.33	3 of 9
66794	octane oxidation	33.33	1 of 3
66794	degradation of aromatic, nitrogen containing compounds	33.33	4 of 12
66794	androgen and estrogen metabolism	31.25	5 of 16
66794	phenylpropanoid biosynthesis	30.77	4 of 13
66794	myo-inositol biosynthesis	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	4-hydroxyphenylacetate degradation	30	3 of 10
66794	benzoyl-CoA degradation	28.57	2 of 7
66794	tyrosine metabolism	28.57	4 of 14
66794	degradation of pentoses	28.57	8 of 28
66794	ascorbate metabolism	27.27	6 of 22
66794	cyclohexanol degradation	25	1 of 4
66794	lactate fermentation	25	1 of 4
66794	vitamin E metabolism	25	1 of 4
66794	carnitine metabolism	25	2 of 8

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Mammals	#Bovinae (Cow, Cattle)
#Host Body-Site	#Organ	#Rumen

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
1311	rumen of cattle	USA	USA	North America

Taxonmaps

69479

Global distribution of 16S sequence FR733672 (>99% sequence identity) for Eubacterium oxidoreducens subclade from Microbeatlas

Aquatic Samples	19
Soil Samples	17
Animal Samples	1141
Plant Samples	55
Total Samples	1232

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1311	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	IMG-taxon 2593339221 annotated assembly for Eubacterium oxidoreducens DSM 3217	scaffold	GCA_900104415	1732.3	2593339221	1732	69.48

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
20218	Eubacterium oxidoreducens partial 16S rRNA gene, type strain DSM3217T	FR733672	1521		1732

GC content

1311

GC-content (mol%)35.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Eubacterium oxidoreducens DSM 3217
NCBI: GCA_900104415

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	yes	76.50	no
125439	motility	BacteriaNetⓘ	yes	77.80	no
125439	gram_stain	BacteriaNetⓘ	variable	80.70	no
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	99.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Eubacterium oxidoreducens DSM 3217
NCBI: GCA_900104415.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	yes	66.27	no
125438	anaerobic	anaerobicⓘ	yes	94.82	yes
125438	aerobic	aerobicⓘ	no	94.47	no
125438	spore-forming	spore-formingⓘ	no	50.24	no
125438	thermophilic	thermophileⓘ	no	85.38	no
125438	flagellated	motile2+ⓘ	yes	67.78	no

Literature

Title	Authors	Journal	DOI	Year
Transformation of (sup14)C-Lignin-Labeled Cell Walls of Wheat by Syntrophococcus sucromutans, Eubacterium oxidoreducens, and Neocallimastix frontalis.	Bernard-Vailhe MA, Besle JM, Dore J.	Appl Environ Microbiol	10.1128/aem.61.1.379-381.1995	1995

References

#1311	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 3217
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Eubacterium oxidoreducens (DSM 3217, G41)

Name and taxonomic classification

Morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Pathway annotation

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900104415

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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