Name: Qipengyuania seohaensis SW-135
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5384

Type strain:

Species: Qipengyuania seohaensis

Strain Designation: SW-135

Culture col. no.: DSM 16221, KCTC 12228, JCM 21815, CGMCC 1.8708, DSM 16225, IAM 15371

Strain history: <- J.H. Yoon

NCBI tax ID(s): 266951 (species)

SI-ID 343917

DSM 16221, KCTC 12228, JCM 21815, IAM 15371

Section

Qipengyuania seohaensis SW-135 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sea water of tidal flat.

Gram-negative
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Alphaproteobacteria*
	Order	*Sphingomonadales*
	Family	*Erythrobacteraceae*
	Genus	*Qipengyuania*
	Species	**Qipengyuania seohaensis**
	Full Scientific Name (LPSN)	Qipengyuania seohaensis (Yoon et al. 2005) Xu et al. 2020

Synonym

Erythrobacter seohaensis

Information on morphological and physiological properties Morphology

[Ref.: #67771]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.985

Information on culture and growth conditions Culture and growth conditions

[Ref.: #6336]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #6336]

Culture medium growth

[Ref.: #6336]

Culture medium link

Medium recipe at MediaDive

[Ref.: #6336]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #6336]	growth	30 °C
[Ref.: #67770]	growth	30 °C
[Ref.: #67771]	growth	30 °C

[Ref.: #6336]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic
[Ref.: #67771]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.985

[Ref.: #67770]

Observation

quinones: Q-10

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #6336]	Sample type/isolated from	sea water of tidal flat
[Ref.: #6336]	Geographic location (country and/or sea, region)	Daepo beach
[Ref.: #6336]	Country	Republic of Korea
[Ref.: #6336]	Country ISO 3 Code	KOR
[Ref.: #6336]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Tidal flat of the Yellow Sea
[Ref.: #67770]	Country	Republic of Korea
[Ref.: #67770]	Country ISO 3 Code	KOR
[Ref.: #67770]	Continent	Asia

[Ref.: #67771]	Sample type/isolated from	From seawater
[Ref.: #67771]	Geographic location (country and/or sea, region)	the west sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Tidal flat

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #6336]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #6336]	Erythrobacter seohaensis 16S ribosomal RNA gene, partial sequence	AY562219	1444	ENA	266951 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Qipengyuania seohaensis SW-135	GCA_002795865	complete	GenBank	266951 tax ID	*

[Ref.: #6336]	GC-content	62.2 mol%	high performance liquid chromatography (HPLC)
[Ref.: #67770]	GC-content	61.7 mol%	genome sequence analysis

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Qipengyuania seohaensis SW-135 NCBI: GCA_002795865.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Qipengyuania seohaensis SW-135 NCBI: GCA_002795865.1
[Ref.: #69480]	flagellated	no	95.352	no
[Ref.: #69480]	gram-positive	no	97.593	yes
[Ref.: #69480]	anaerobic	no	99.332	no
[Ref.: #69480]	aerobic	yes	94.15	no
[Ref.: #69480]	halophile	no	76.405	no
[Ref.: #69480]	spore-forming	no	95.449	no
[Ref.: #69480]	glucose-util	yes	86.427	no
[Ref.: #69480]	thermophile	no	98.151	yes
[Ref.: #69480]	motile	no	87.443	no
[Ref.: #69480]	glucose-ferment	no	92.001	no

Availability in culture collections External links

[Ref.: #6336]

Culture collection no.

DSM 16221, KCTC 12228, JCM 21815, CGMCC 1.8708, DSM 16225, IAM 15371

[Ref.: #74874]

SI-ID 343917

Literature:

	Title	Authors	Journal	DOI	Year
	Structure and Function Insight of the alpha-Glucosidase QsGH13 From Qipengyuania seohaensis sp. SW-135.	Zhai X, Wu K, Ji R, Zhao Y, Lu J, Yu Z, Xu X, Huang J	Front Microbiol	10.3389/fmicb.2022.849585	2022	*

References

#6336

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16221

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74874

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID343917.1 )

* These data were automatically processed and therefore are not curated

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