Strain identifier

BacDive ID: 5384

Type strain: Yes

Species: Qipengyuania seohaensis

Strain Designation: SW-135

Strain history: <- J.H. Yoon

NCBI tax ID(s): 266951 (species)

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General

@ref: 6336

BacDive-ID: 5384

DSM-Number: 16221

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative

description: Qipengyuania seohaensis SW-135 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sea water of tidal flat.

NCBI tax id

  • NCBI tax id: 266951
  • Matching level: species

strain history

@refhistory
6336<- J.-H. Yoon; SW-135
67770IAM 15371.
67771<- J.H. Yoon

doi: 10.13145/bacdive5384.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Alphaproteobacteria
  • order: Sphingomonadales
  • family: Erythrobacteraceae
  • genus: Qipengyuania
  • species: Qipengyuania seohaensis
  • full scientific name: Qipengyuania seohaensis (Yoon et al. 2005) Xu et al. 2020

  • synonyms

    • @ref: 20215
    • synonym: Erythrobacter seohaensis

@ref: 6336

domain: Bacteria

phylum: Proteobacteria

class: Alphaproteobacteria

order: Sphingomonadales

family: Erythrobacteraceae

genus: Erythrobacter

species: Erythrobacter seohaensis

full scientific name: Erythrobacter seohaensis Yoon et al. 2005

strain designation: SW-135

type strain: yes

Morphology

cell morphology

@refgram stainconfidence
67771negative
69480negative99.985

Culture and growth conditions

culture medium

  • @ref: 6336
  • name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
  • growth: yes
  • link: https://mediadive.dsmz.de/medium/514
  • composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

culture temp

@refgrowthtypetemperaturerange
6336positivegrowth30mesophilic
67770positivegrowth30mesophilic
67771positivegrowth30mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 67771
  • oxygen tolerance: aerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.985

observation

  • @ref: 67770
  • observation: quinones: Q-10

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6336sea water of tidal flatDaepo beachRepublic of KoreaKORAsia
67770Tidal flat of the Yellow SeaRepublic of KoreaKORAsia
67771From seawaterthe west seaRepublic of KoreaKORAsia

isolation source categories

Cat1Cat2Cat3
#Environmental#Aquatic#Marine
#Environmental#Terrestrial#Tidal flat

Safety information

risk assessment

  • @ref: 6336
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 6336
  • description: Erythrobacter seohaensis 16S ribosomal RNA gene, partial sequence
  • accession: AY562219
  • length: 1444
  • database: ena
  • NCBI tax ID: 266951

Genome sequences

  • @ref: 66792
  • description: Qipengyuania seohaensis SW-135
  • accession: GCA_002795865
  • assembly level: complete
  • database: ncbi
  • NCBI tax ID: 266951

GC content

@refGC-contentmethod
633662.2high performance liquid chromatography (HPLC)
6777061.7genome sequence analysis

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno95.352no
gram-positiveno97.593yes
anaerobicno99.332no
aerobicyes94.15no
halophileno76.405no
spore-formingno95.449no
glucose-utilyes86.427no
thermophileno98.151yes
motileno87.443no
glucose-fermentno92.001no

External links

@ref: 6336

culture collection no.: DSM 16221, KCTC 12228, JCM 21815, CGMCC 1.8708, DSM 16225, IAM 15371

straininfo link

  • @ref: 74874
  • straininfo: 343917

literature

  • Pubmed-ID: 35308395
  • title: Structure and Function Insight of the alpha-Glucosidase QsGH13 From Qipengyuania seohaensis sp. SW-135.
  • authors: Zhai X, Wu K, Ji R, Zhao Y, Lu J, Yu Z, Xu X, Huang J
  • journal: Front Microbiol
  • DOI: 10.3389/fmicb.2022.849585
  • year: 2022

Reference

@idauthorscataloguedoi/urltitle
6336Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16221)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16221
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
67771Curators of the KCTChttps://kctc.kribb.re.kr/En/Kctc
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
74874Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID343917.1StrainInfo: A central database for resolving microbial strain identifiers