Strain identifier
BacDive ID: 5384
Type strain: 
Species: Qipengyuania seohaensis
Strain Designation: SW-135
Strain history: <- J.H. Yoon
NCBI tax ID(s): 266951 (species)
version 9.3 (current version)
General
@ref: 6336
BacDive-ID: 5384
DSM-Number: 16221
keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, Gram-negative
description: Qipengyuania seohaensis SW-135 is an aerobe, mesophilic, Gram-negative bacterium that was isolated from sea water of tidal flat.
NCBI tax id
- NCBI tax id: 266951
- Matching level: species
strain history
| @ref | history |
|---|---|
| 6336 | <- J.-H. Yoon; SW-135 |
| 67770 | IAM 15371. |
| 67771 | <- J.H. Yoon |
doi: 10.13145/bacdive5384.20250331.9.3
Name and taxonomic classification
LPSN
- @ref: 20215
- description: domain/bacteria
- keyword: phylum/pseudomonadota
- domain: Bacteria
- phylum: Pseudomonadota
- class: Alphaproteobacteria
- order: Sphingomonadales
- family: Erythrobacteraceae
- genus: Qipengyuania
- species: Qipengyuania seohaensis
- full scientific name: Qipengyuania seohaensis (Yoon et al. 2005) Xu et al. 2020
synonyms
- @ref: 20215
- synonym: Erythrobacter seohaensis
@ref: 6336
domain: Bacteria
phylum: Proteobacteria
class: Alphaproteobacteria
order: Sphingomonadales
family: Erythrobacteraceae
genus: Qipengyuania
species: Qipengyuania seohaensis
full scientific name: Qipengyuania seohaensis (Yoon et al. 2005) Xu et al. 2020
strain designation: SW-135
type strain: yes
Morphology
cell morphology
| @ref | gram stain | confidence |
|---|---|---|
| 67771 | negative | |
| 125439 | negative | 99.4 |
| 125438 | negative | 98.469 |
Culture and growth conditions
culture medium
- @ref: 6336
- name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)
- growth: yes
- link: https://mediadive.dsmz.de/medium/514
- composition: Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
culture temp
| @ref | growth | type | temperature |
|---|---|---|---|
| 6336 | positive | growth | 30 |
| 67770 | positive | growth | 30 |
| 67771 | positive | growth | 30 |
Physiology and metabolism
oxygen tolerance
| @ref | oxygen tolerance | confidence |
|---|---|---|
| 67771 | aerobe | |
| 125439 | obligate aerobe | 97.1 |
spore formation
| @ref | spore formation | confidence |
|---|---|---|
| 125439 | no | 98 |
| 125438 | no | 93.356 |
observation
- @ref: 67770
- observation: quinones: Q-10
Isolation, sampling and environmental information
isolation
| @ref | sample type | geographic location | country | origin.country | continent |
|---|---|---|---|---|---|
| 6336 | sea water of tidal flat | Daepo beach | Republic of Korea | KOR | Asia |
| 67770 | Tidal flat of the Yellow Sea | Republic of Korea | KOR | Asia | |
| 67771 | From seawater | the west sea | Republic of Korea | KOR | Asia |
isolation source categories
| Cat1 | Cat2 | Cat3 |
|---|---|---|
| #Environmental | #Aquatic | #Marine |
| #Environmental | #Terrestrial | #Tidal flat |
Safety information
risk assessment
- @ref: 6336
- biosafety level: 1
- biosafety level comment: Risk group (German classification)
Sequence information
16S sequences
- @ref: 6336
- description: Erythrobacter seohaensis 16S ribosomal RNA gene, partial sequence
- accession: AY562219
- length: 1444
- database: nuccore
- NCBI tax ID: 266951
Genome sequences
- @ref: 66792
- description: Qipengyuania seohaensis SW-135
- accession: GCA_002795865
- assembly level: complete
- database: ncbi
- NCBI tax ID: 266951
GC content
| @ref | GC-content | method |
|---|---|---|
| 6336 | 62.2 | high performance liquid chromatography (HPLC) |
| 67770 | 61.7 | genome sequence analysis |
Genome-based predictions
predictions
| @ref | model | trait | description | prediction | confidence | training_data |
|---|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positive | Positive reaction to Gram-staining | no | 98.469 | yes |
| 125438 | anaerobic | anaerobic | Ability to grow under anoxygenic conditions (including facultative anaerobes) | no | 93.961 | no |
| 125438 | aerobic | aerobic | Ability to grow under oxygenic conditions (including facultative aerobes) | yes | 87.168 | yes |
| 125438 | spore-forming | spore-forming | Ability to form endo- or exospores | no | 93.356 | no |
| 125438 | thermophile | thermophilic | Ability to grow at temperatures above or equal to 45°C | no | 97.531 | no |
| 125438 | motile2+ | flagellated | Ability to perform flagellated movement | no | 66.677 | no |
| 125439 | BacteriaNet | spore_formation | Ability to form endo- or exospores | no | 98 | |
| 125439 | BacteriaNet | motility | Ability to perform movement | no | 61.4 | |
| 125439 | BacteriaNet | gram_stain | Reaction to gram-staining | negative | 99.4 | |
| 125439 | BacteriaNet | oxygen_tolerance | Oxygenic conditions needed for growth | obligate aerobe | 97.1 |
External links
@ref: 6336
culture collection no.: DSM 16221, KCTC 12228, JCM 21815, CGMCC 1.8708, IAM 15371
straininfo link
- @ref: 74874
- straininfo: 343917
literature
- Pubmed-ID: 35308395
- title: Structure and Function Insight of the alpha-Glucosidase QsGH13 From Qipengyuania seohaensis sp. SW-135.
- authors: Zhai X, Wu K, Ji R, Zhao Y, Lu J, Yu Z, Xu X, Huang J
- journal: Front Microbiol
- DOI: 10.3389/fmicb.2022.849585
- year: 2022
Reference
| @id | authors | catalogue | doi/url | title |
|---|---|---|---|---|
| 6336 | Curators of the DSMZ | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16221) | https://www.dsmz.de/collection/catalogue/details/culture/DSM-16221 | |
| 20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M. | 10.1099/ijsem.0.004332 | List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ | |
| 66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann | https://diaspora-project.de/progress.html#genomes | Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) | |
| 67770 | Curators of the JCM | https://jcm.brc.riken.jp/en/ | ||
| 67771 | Curators of the KCTC | https://kctc.kribb.re.kr/En/Kctc | ||
| 74874 | Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J. | 10.60712/SI-ID343917.1 | StrainInfo: A central database for resolving microbial strain identifiers | |
| 125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann | 10.1101/2024.08.12.607695 | Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets | |
| 125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy | https://github.com/GenomeNet/deepG | deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 |