Qipengyuania flava (DSM 16421, JCM 11808, KCCM 41642)

Name: Qipengyuania flava (DSM 16421, JCM 11808, KCCM 41642)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5385

Type strain

Strain Designation SW-46

Culture col. no. DSM 16421 JCM 11808 KCCM 41642 SW-46 CIP 108097

NCBI tax ID(s) 192812

Special Collections DSMZ JCM CIP

History DSMZ <- J.-H. Yoon, Korea Res. Inst. of Biosci. and Biotechnol. (KRIBB); SW-46 <- J.-H. Yoon et al. JCM <-- J.-H. Yoon SW-46. CIP <- 2003, JCM <- 2002, KRIBB: strain SW-46

Links

Qipengyuania flava SW-46 is an obligate aerobe, Gram-negative, motile bacterium that was isolated from sea water.

Gram-negative motile rod-shaped obligate aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 405534

JCM 11808,DSM 16421

@ref 20215

Last LPSN update 2026-05-29 08:26:09

Domain Bacteria

Phylum Pseudomonadota

Class Alphaproteobacteria

Order Sphingomonadales

Family Erythrobacteraceae

Genus Qipengyuania

Species Qipengyuania flava

Full scientific name Qipengyuania flava (Yoon et al. 2003) Lee and Kim 2020

Synonyms (1)

Erythrobacter flavus

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
119386	negative	rod-shaped
125439	negative		99.138
125438	negative		97.963

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
6442	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)	Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water
36688	Marine agar (MA)		Distilled water make up to (1000.000 ml);Marine agar (55.100 g)
119386	CIP Medium 13	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
6442	positive	growth	30
36688	positive	growth	30
67770	positive	growth	30
119386	positive	growth	25-37
119386	negative	growth	5
119386	negative	growth	41

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	98.422
119386	obligate aerobe

Spore formation

@ref	Spore formation	Confidence
125438		92.36
125439		99.416

Halophily

@ref	Salt	Growth	Tested relation	Concentration
119386	NaCl	positive	growth	0-10 %

Observation

67770

Observationquinones: Q-10

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
119386	16947 ChEBI	citrate	-	carbon source
119386	4853 ChEBI	esculin	-	hydrolysis
119386	606565 ChEBI	hippurate	+	hydrolysis
119386	15792 ChEBI	malonate	-	assimilation
119386	17632 ChEBI	nitrate	-	builds gas from
119386	17632 ChEBI	nitrate	-	reduction
119386	17632 ChEBI	nitrate	-	respiration
119386	16301 ChEBI	nitrite	-	builds gas from
119386	16301 ChEBI	nitrite	-	reduction

Metabolite production

@ref	Chebi-ID	Metabolite	Production
119386	35581 ChEBI	indole

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test
119386	15688 ChEBI	acetoin	-
119386	17234 ChEBI	glucose		-

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119386	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	-	3.2.1.22	from API zym
68382	alpha-glucosidase	-	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
119386	amylase	-
68382	beta-galactosidase	-	3.2.1.23	from API zym
119386	beta-galactosidase	-	3.2.1.23
68382	beta-glucosidase	-	3.2.1.21	from API zym
68382	beta-glucuronidase	-	3.2.1.31	from API zym
119386	caseinase	-	3.4.21.50
119386	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68382	esterase (C 4)	-		from API zym
68382	esterase lipase (C 8)	+		from API zym
119386	gamma-glutamyltransferase	+	2.3.2.2
119386	gelatinase	+/-
119386	lecithinase	+
68382	leucine arylamidase	+	3.4.11.1	from API zym
119386	lipase	-
68382	lipase (C 14)	-		from API zym
119386	lysine decarboxylase	-	4.1.1.18
68382	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119386	ornithine decarboxylase	-	4.1.1.17
119386	oxidase	-
119386	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	+	3.4.21.4	from API zym
119386	tryptophan deaminase	-
119386	tween esterase	+
119386	urease	-	3.5.1.5
68382	valine arylamidase	+		from API zym

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119386	-	+	-	+	-	+	+	-	+	-	+	+	-	-	-	-	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
6442	sea water	East Sea, Hwajinpo Beach	Republic of Korea	KOR	Asia
67770	Seawater of Hwajinpo Beach		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence AF500004 (>99% sequence identity) for Qipengyuania from Microbeatlas

Aquatic Samples	300
Soil Samples	5
Animal Samples	90
Plant Samples	1
Total Samples	396

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
6442	1	Risk group (German classification) According to TRBA 466
119386	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	ASM1176200v1 assembly for Qipengyuania flava DSM 16421	scaffold	GCA_011762005	192812.28	2828320713	192812	76.2

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
6442	Erythrobacter flavus strain SW-46 16S ribosomal RNA gene, partial sequence	AF500004	1442		192812

GC content

@ref	GC-content (mol%)	Method
67770	64	high performance liquid chromatography (HPLC)
67770	63.3	genome sequence analysis

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: ASM1176200v1 assembly for Qipengyuania flava DSM 16421
NCBI: GCA_011762005

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	98.42	no
125439	gram_stain	BacteriaNetⓘ	negative	99.14	no
125439	motility	BacteriaNetⓘ	yes	42.53	no
125439	spore_formation	BacteriaNetⓘ	no	99.42	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Erythrobacter flavus strain DSM 16421
PATRIC: 192812.28

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	97.96	no
125438	anaerobic	anaerobicⓘ	no	95.95	yes
125438	spore-forming	spore-formingⓘ	no	92.36	no
125438	aerobic	aerobicⓘ	yes	86.46	yes
125438	thermophilic	thermophileⓘ	no	92.59	yes
125438	flagellated	motile2+ⓘ	yes	60.35	no

Literature

References

#6442	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16421
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#36688	; Curators of the CIP;
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68382	Automatically annotated from API zym .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#119386	Collection of Institut Pasteur ; Curators of the CIP; CIP 108097
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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