Name: Cronobacter muytjensii 83-07-023
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 5242

Type strain:

Species: Cronobacter muytjensii

Strain Designation: 83-07-023, E603, LRA 023 07 83

Culture col. no.: DSM 21870, ATCC 51329, CIP 103581, WDCM 00213, CECT 9143

Strain history: CIP <- 1992, R. Mercier, bioMérieux, La Balme-les-Grottes, France, Enterobacter sakazakii: strain LRA 023 07 83 <- 1983, INSERM, Villeneuve d'Ascq, France

NCBI tax ID(s): 1159613 (strain), 413501 (species)

SI-ID 42926

ATCC 51329, CIP 103581

Special Collections

Section

When using BacDive for research please cite our paper

Cronobacter muytjensii 83-07-023 is an aerobe, mesophilic, Gram-negative bacterium of the family Enterobacteriaceae.

Gram-negative
motile
rod-shaped
aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Cronobacter*
	Species	**Cronobacter muytjensii**
	Full Scientific Name (LPSN)	Cronobacter muytjensii Iversen et al. 2008

Synonym

"Cronobacter muytjensii"

Information on morphological and physiological properties Morphology

[Ref.: #32494]	Gram stain	negative
[Ref.: #121207]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %99.5
[Ref.: #125439]	Gram stain	negative Confidence in %97.9

[Ref.: #32494]	Cell length	3 µm

[Ref.: #32494]	Cell width	1 µm

[Ref.: #32494]	Cell shape	rod-shaped
[Ref.: #121207]	Cell shape	rod-shaped

[Ref.: #32494]	Motility	yes
[Ref.: #121207]	Motility	yes

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16003]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #16003]

Culture medium growth

[Ref.: #16003]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16003]

Culture medium composition

expand / minimize

[Ref.: #41817]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #41817]

Culture medium growth

[Ref.: #41817]

Culture medium composition

expand / minimize

[Ref.: #16003]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #16003]

Culture medium growth

[Ref.: #16003]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16003]

Culture medium composition

expand / minimize

[Ref.: #16003]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #16003]

Culture medium growth

[Ref.: #16003]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16003]

Culture medium composition

expand / minimize

[Ref.: #121207]

Culture medium

CIP Medium 3

[Ref.: #121207]

Culture medium growth

[Ref.: #121207]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #121207]

Culture medium

CIP Medium 72

[Ref.: #121207]

Culture medium growth

[Ref.: #121207]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #16003]	growth	28 °C
[Ref.: #16003]	growth	30 °C
[Ref.: #32494]	growth	06-45 °C
[Ref.: #41817]	growth	30 °C

	pH	Kind of pH		pH
[Ref.: #32494]			growth	05-10

Information on physiology and metabolism Physiology and metabolism

[Ref.: #32494]	Oxygen tolerance	aerobe
[Ref.: #121207]	Oxygen tolerance	facultative anaerobe
[Ref.: #125439]	Oxygen tolerance	aerobe Confidence in %92.9

[Ref.: #125438]	Ability of spore formation	no Confidence in %90.306
[Ref.: #125439]	Ability of spore formation	no Confidence in %91.9

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #32494]		NaCl		growth	<7	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	+	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #32494]	esculin ChEBI	+	hydrolysis
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #32494]	malonate ChEBI	+	carbon source
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #32494]	myo-inositol ChEBI	+	carbon source
[Ref.: #68368]	myo-inositol ChEBI	+	fermentation	* from API 20E
[Ref.: #32494]	nitrate ChEBI	+	reduction
[Ref.: #121207]	nitrate ChEBI	+	reduction
[Ref.: #121207]	nitrite ChEBI	+	reduction
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #32494]	putrescine ChEBI	+	carbon source
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	+	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	-	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #32494]	indole ChEBI	yes
[Ref.: #121207]	indole ChEBI	yes
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	yes	* from API 20E

	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #32494]	indole ChEBI		+
[Ref.: #68368]	acetoin ChEBI	+		* from API 20E
[Ref.: #68368]	indole ChEBI		+	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	+	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #32494]	catalase	+	1.11.1.6
[Ref.: #121207]	catalase	+	1.11.1.6
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #121207]	oxidase	-
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #121207]	urease	-	3.5.1.5
[Ref.: #68368]	urease	-	3.5.1.5	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #16003]	19665	+	+	-	+	+	-	-	-	+	+	+	+	+	+	-	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #16003]	18295	+	+	-	+	+	-	-	-	+	+	-	+	+	+	-	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16003]	Country	France
[Ref.: #16003]	Country ISO 3 Code	FRA
[Ref.: #16003]	Continent	Europe
* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16003]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #121207]	Biosafety level	2	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16003]	Cronobacter muytjensii ATCC 51329 strain E603 16S ribosomal RNA gene, partial sequence	EF059845	1425	GenBank ENA	1159613 tax ID
[Ref.: #20218]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence	HQ880421	1443	GenBank ENA	1159613 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069207	1393	GenBank ENA	28141 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069208	1392	GenBank ENA	28141 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069209	1402	GenBank ENA	28141 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069210	1415	GenBank ENA	28141 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069211	1417	GenBank ENA	28141 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069212	1422	GenBank ENA	28141 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069213	1385	GenBank ENA	28141 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069214	1399	GenBank ENA	413497 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069215	1466	GenBank ENA	28141 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069216	1391	GenBank ENA	28141 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069217	1405	GenBank ENA	28141 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069218	1394	GenBank ENA	28141 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069219	1415	GenBank ENA	28141 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069220	1424	GenBank ENA	28141 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069221	1397	GenBank ENA	28141 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069222	1385	GenBank ENA	28141 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069223	1421	GenBank ENA	413502 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069224	1426	GenBank ENA	28141 tax ID	*
[Ref.: #124043]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence.	HM069225	1398	GenBank ENA	28141 tax ID	*
[Ref.: #20218]	Enterobacter sakazakii strain ATCC 51329 16S ribosomal RNA gene, partial sequence	AY579153	528	GenBank ENA	28141 tax ID	*
[Ref.: #20218]	Enterobacter sakazakii partial 16S-23S IGS, strain ATCC 51329	AM295804	154	GenBank ENA	28141 tax ID	*
[Ref.: #20218]	Enterobacter sakazakii strain ATCC 51329 16S ribosomal RNA gene, partial sequence	AY752937	1480	GenBank ENA	28141 tax ID	*
[Ref.: #20218]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence	GU122217	1507	GenBank ENA	1159613 tax ID	*
[Ref.: #20218]	Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequence	HM069226	1413	GenBank ENA	1159613 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Cronobacter muytjensii ATCC 51329	GCA_001277195	complete	GenBank ENA	1159613 tax ID	*
[Ref.: #66792]	Cronobacter muytjensii ATCC 51329	GCA_000409285	contig	GenBank ENA	1159613 tax ID	*
[Ref.: #66792]	Cronobacter muytjensii ATCC 51329	1159613.6	complete	PATRIC	1159613 tax ID	*
[Ref.: #66792]	Cronobacter muytjensii ATCC 51329	1159613.3	wgs	PATRIC	1159613 tax ID	*
[Ref.: #66792]	Cronobacter muytjensii ATCC 51329	2548876993	draft	JGI IMG/M	1159613 tax ID	*
[Ref.: #66792]	Cronobacter muytjensii ATCC 51329	2667527495	complete	JGI IMG/M	1159613 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cronobacter muytjensii ATCC 51329 ATCC 51329 NCBI: GCA_001277195.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	99.5	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	94.401	yes
[Ref.: #125438]	aerobic	aerobicⓘ	no	63.912	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	90.306	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	99.3	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	74.778	no

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Cronobacter muytjensii ATCC 51329 NCBI: GCA_001277195
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	aerobe	92.9
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	97.9
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	71
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	91.9

Availability in culture collections External links

[Ref.: #16003]

Culture collection no.

DSM 21870, ATCC 51329, CIP 103581, WDCM 00213, CECT 9143

[Ref.: #74733]

SI-ID 42926

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mixta tenebrionis sp. nov., isolated from the gut of the plastic-eating mealworm Tenebrio molitor L.	Xia M, Wang J, Huo YX, Yang Y	Int J Syst Evol Microbiol	10.1099/ijsem.0.003826	2020	*
Enzymology	Plasmonic ELISA based on DNA-directed gold nanoparticle growth for Cronobacter detection in powdered infant formula samples.	Wu Y, Xiong Y, Chen X, Luo D, Gao B, Chen J, Huang X, Leng Y, Xiong Y	J Dairy Sci	10.3168/jds.2019-17067	2019	*
Phylogeny	Cronobacter gen. nov., a new genus to accommodate the biogroups of Enterobacter sakazakii, and proposal of Cronobacter sakazakii gen. nov., comb. nov., Cronobacter malonaticus sp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov., Cronobacter genomospecies 1, and of three subspecies, Cronobacter dublinensis subsp. dublinensis subsp. nov., Cronobacter dublinensis subsp. lausannensis subsp. nov. and Cronobacter dublinensis subsp. lactaridi subsp. nov.	Iversen C, Mullane N, McCardell B, Tall BD, Lehner A, Fanning S, Stephan R, Joosten H	Int J Syst Evol Microbiol	10.1099/ijs.0.65577-0	2008	*

References

#16003

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 21870

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#32494

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28714 (see below)

#41817 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#74733

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID42926.1 )

#121207 Collection of Institut Pasteur ; Curators of the CIP; CIP 103581

#124043

Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

#28714

IJSEM 1442 2008 ( DOI 10.1099/ijs.0.65577-0 , PubMed 18523192 )

* These data were automatically processed and therefore are not curated

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Cronobacter muytjensii ATCC 51329 ATCC 51329

Cronobacter muytjensii ATCC 51329

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