Cronobacter dublinensis subsp. lausannensis (CCUG 58095, DSM 18706, LMG 23824)

Name: Cronobacter dublinensis subsp. lausannensis (CCUG 58095, DSM 18706, LMG 23824)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5241

Type strain

Strain Designation E515

Culture col. no. CCUG 58095 DSM 18706 LMG 23824 E515 JCM 16469

NCBI tax ID(s) 1159560 413500

Special Collections DSMZ CCUG JCM

Links

Cronobacter dublinensis subsp. lausannensis E515 is an aerobe, mesophilic prokaryote that was isolated from water fountain basin.

aerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 354306

DSM 18706,LMG 23824,JCM 16469,CCUG 58095

@ref 20215

Last LPSN update 2025-12-16 09:48:01

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Cronobacter

Species Cronobacter dublinensis subsp. lausannensis

Full scientific name Cronobacter dublinensis subsp. lausannensis Iversen et al. 2008

Morphology

Cell morphology

@ref	Gram stain	Confidence
125438	negative	99
125439	negative	98.1

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
7667	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)		Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
7667	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)		Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
7667	positive	growth	37	mesophilic
61595	positive	growth	30	mesophilic
67770	positive	growth	30	mesophilic

Physiology and metabolism

Oxygen tolerance

61595

Oxygen toleranceaerobe

Spore formation

@ref	Spore formation	Confidence
125439		96.8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68374	29016 ChEBI	arginine	+	hydrolysis	from API ID32E
68374	17057 ChEBI	cellobiose	-	builds acid from	from API ID32E
68374	18333 ChEBI	D-arabitol	-	builds acid from	from API ID32E
68374	18024 ChEBI	D-galacturonic acid	+	builds acid from	from API ID32E
68374	17634 ChEBI	D-glucose	+	builds acid from	from API ID32E
68374	16899 ChEBI	D-mannitol	+	builds acid from	from API ID32E
68374	30849 ChEBI	L-arabinose	-	builds acid from	from API ID32E
68374	18403 ChEBI	L-arabitol	-	builds acid from	from API ID32E
68374	62345 ChEBI	L-rhamnose	+	builds acid from	from API ID32E
68374	25094 ChEBI	lysine	-	degradation	from API ID32E
68374	15792 ChEBI	malonate	-	assimilation	from API ID32E
68374	17306 ChEBI	maltose	-	builds acid from	from API ID32E
68374	17268 ChEBI	myo-inositol	-	builds acid from	from API ID32E
68374	18257 ChEBI	ornithine	+	degradation	from API ID32E
68374	18394 ChEBI	palatinose	-	builds acid from	from API ID32E
68374		Potassium 5-ketogluconate	-	builds acid from	from API ID32E
68374	15963 ChEBI	ribitol	-	builds acid from	from API ID32E
68374	30911 ChEBI	sorbitol	-	builds acid from	from API ID32E
68374	17992 ChEBI	sucrose	+	builds acid from	from API ID32E
68374	27082 ChEBI	trehalose	+	builds acid from	from API ID32E
68374	27897 ChEBI	tryptophan	+	energy source	from API ID32E
68374	16199 ChEBI	urea	-	hydrolysis	from API ID32E

Metabolite production

@ref	Chebi-ID	Metabolite	Production
68374	35581 ChEBI	indole		from API ID32E

Metabolite tests

@ref	Chebi-ID	Metabolite	Indole test
68374	35581 ChEBI	indole	+	from API ID32E

Enzymes

@ref	Value	Activity	Ec
68374	alpha-galactosidase	+	3.2.1.22	from API ID32E
68374	alpha-glucosidase	+	3.2.1.20	from API ID32E
68374	alpha-maltosidase	+		from API ID32E
68374	arginine dihydrolase	+	3.5.3.6	from API ID32E
68374	beta-galactosidase	+	3.2.1.23	from API ID32E
68374	beta-glucosidase	+	3.2.1.21	from API ID32E
68374	beta-glucuronidase	-	3.2.1.31	from API ID32E
68374	L-aspartate arylamidase	-	3.4.11.21	from API ID32E
68374	lipase	+		from API ID32E
68374	lysine decarboxylase	-	4.1.1.18	from API ID32E
68374	N-acetyl-beta-glucosaminidase	-	3.2.1.52	from API ID32E
68374	ornithine decarboxylase	+	4.1.1.17	from API ID32E
68374	urease	-	3.5.1.5	from API ID32E

API ID32E

@ref	ODC	ADH (Arg)	LDC (Lys)	URE	LARL	GAT	5KG	LipaseLIP	Phenol red (Acidification)RP	beta GLU	MAN	MAL	ADO	PLE	beta GUR	MNT	IND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta GAL	GLU	SAC	LARA	DARL	alpha GLU	alpha GAL	TRE	RHA	INO	CEL	SOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
61595	+	+	-	-	-	+	-	+	-	+	+	-	-	-	-	-	+	-	+	+	+	-	-	+	+	+	+	-	-	-	+	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
7667	water fountain basin	Switzerland	CHE	Europe
61595	Water fountain,basin	Switzerland	CHE	Europe
67770	Basin of a water fountain

Taxonmaps

69479

Global distribution of 16S sequence EF059841 (>99% sequence identity) for Cronobacter from Microbeatlas

Aquatic Samples	2553
Soil Samples	1166
Animal Samples	20787
Plant Samples	2029
Total Samples	26535

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
7667	2	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
67770	E515 assembly for Cronobacter dublinensis subsp. lausannensis LMG 23824	complete	GCA_000409365	1159560.3	2548876991	1159560	98.31

Genome browser: GCA_000409365

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Cronobacter dublinensis subsp. lausannensis LMG 23824 strain E515 16S ribosomal RNA gene, partial sequence	EF059841	1417	1159560
124043	Cronobacter dublinensis subsp. lausannensis strain DSM 18706 16S ribosomal RNA gene, partial sequence.	MF118667	1345	413500
124043	Cronobacter dublinensis subsp. lausannensis LMG 23824 16S ribosomal RNA gene, partial sequence.	MT779759	1375	1159560
124043	Cronobacter dublinensis subsp. lausannensis LMG 23824 16S ribosomal RNA gene, partial sequence.	MT780297	1356	1159560
124043	Cronobacter dublinensis subsp. lausannensis LMG 23824 16S ribosomal RNA gene, partial sequence.	MT780112	1339	1159560
124043	Cronobacter dublinensis subsp. lausannensis LMG 23824 16S ribosomal RNA gene, partial sequence.	MT780122	1426	1159560
124043	Cronobacter dublinensis subsp. lausannensis LMG 23824 16S ribosomal RNA gene, partial sequence.	MT776557	1360	1159560
124043	Cronobacter dublinensis subsp. lausannensis LMG 23824 16S ribosomal RNA gene, partial sequence.	MT780121	1348	1159560

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Cronobacter dublinensis subsp. lausannensis LMG 23824
NCBI: GCA_000409365

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	87.30	no
125439	gram_stain	BacteriaNetⓘ	negative	98.10	no
125439	motility	BacteriaNetⓘ	yes	62.40	no
125439	spore_formation	BacteriaNetⓘ	no	96.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Cronobacter dublinensis subsp. lausannensis LMG 23824
PATRIC: 1159560.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	94.62	yes
125438	spore-forming	spore-formingⓘ	no	88.80	no
125438	aerobic	aerobicⓘ	no	62.79	no
125438	thermophilic	thermophileⓘ	no	99.80	yes
125438	flagellated	motile2+ⓘ	yes	74.80	no

Literature

Title	Authors	Journal	DOI	Year
Linking Genomo- and Pathotype: Exploiting the Zebrafish Embryo Model to Investigate the Divergent Virulence Potential among Cronobacter spp.	Eshwar AK, Tall BD, Gangiredla J, Gopinath GR, Patel IR, Neuhauss SC, Stephan R, Lehner A.	PLoS One	10.1371/journal.pone.0158428	2016
Analysis of the Molecular Diversity Among Cronobacter Species Isolated From Filth Flies Using Targeted PCR, Pan Genomic DNA Microarray, and Whole Genome Sequencing Analyses.	Jang H, Chase HR, Gangiredla J, Grim CJ, Patel IR, Kothary MH, Jackson SA, Mammel MK, Carter L, Negrete F, Finkelstein S, Weinstein L, Yan Q, Iversen C, Pagotto F, Stephan R, Lehner A, Eshwar AK, Fanning S, Farber J, Gopinath GR, Tall BD, Pava-Ripoll M.	Front Microbiol	10.3389/fmicb.2020.561204	2020
Pan-genome analysis of the emerging foodborne pathogen Cronobacter spp. suggests a species-level bidirectional divergence driven by niche adaptation.	Grim CJ, Kotewicz ML, Power KA, Gopinath G, Franco AA, Jarvis KG, Yan QQ, Jackson SA, Sathyamoorthy V, Hu L, Pagotto F, Iversen C, Lehner A, Stephan R, Fanning S, Tall BD.	BMC Genomics	10.1186/1471-2164-14-366	2013
Whole Genome Sequencing-Based Taxonomic Identification of Dulcitol-Positive Cronobacter dublinensis subsp. beijingensis subsp. nov. and Cronobacter dublinensis subsp. infanticibi subsp. nov. from Infant Cereals in China.	Gan X, Li M, Li F, Zhao J, Li H, Fanning S, Dong Y, Bai L.	Curr Microbiol	10.1007/s00284-025-04447-z	2025
The taxonomy of Enterobacter sakazakii: proposal of a new genus Cronobacter gen. nov. and descriptions of Cronobacter sakazakii comb. nov. Cronobacter sakazakii subsp. sakazakii, comb. nov., Cronobacter sakazakii subsp. malonaticus subsp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov. and Cronobacter genomospecies 1.	Iversen C, Lehner A, Mullane N, Bidlas E, Cleenwerck I, Marugg J, Fanning S, Stephan R, Joosten H.	BMC Evol Biol	10.1186/1471-2148-7-64	2007
Cronobacter gen. nov., a new genus to accommodate the biogroups of Enterobacter sakazakii, and proposal of Cronobacter sakazakii gen. nov., comb. nov., Cronobacter malonaticus sp. nov., Cronobacter turicensis sp. nov., Cronobacter muytjensii sp. nov., Cronobacter dublinensis sp. nov., Cronobacter genomospecies 1, and of three subspecies, Cronobacter dublinensis subsp. dublinensis subsp. nov., Cronobacter dublinensis subsp. lausannensis subsp. nov. and Cronobacter dublinensis subsp. lactaridi subsp. nov.	Iversen C, Mullane N, McCardell B, Tall BD, Lehner A, Fanning S, Stephan R, Joosten H	Int J Syst Evol Microbiol	10.1099/ijs.0.65577-0	2008

References

#7667	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 18706
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#61595	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 58095
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68374	Automatically annotated from API ID32E .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Cronobacter dublinensis subsp. lausannensis (CCUG 58095, DSM 18706, LMG 23824)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

API ID32E

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000409365

16S sequences

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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