Name: Mangrovibacter plantisponsor MSSRF40
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5243

Type strain:

Species: Mangrovibacter plantisponsor

Strain Designation: MSSRF40

Culture col. no.: DSM 19579, LMG 24236

Strain history: <- S. Nair, M.S. Swaminathan Research Foundation <- N. Ramesh kumar, M.S. Swaminathan Research Foundation, Taramani, India

NCBI tax ID(s): 451513 (species)

Section

Mangrovibacter plantisponsor MSSRF40 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from Porteresia coarctata from mangrove ecosystem.

Gram-negative
motile
rod-shaped
facultative anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Mangrovibacter*
	Species	**Mangrovibacter plantisponsor**
	Full Scientific Name (LPSN)	Mangrovibacter plantisponsor Rameshkumar et al. 2010

Information on morphological and physiological properties Morphology

[Ref.: #29192]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.98

[Ref.: #29192]	Cell length	2.6 µm

[Ref.: #29192]	Cell width	1 µm

[Ref.: #29192]	Cell shape	rod-shaped

[Ref.: #29192]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.435

[Ref.: #29192]

Pigment production

yes

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #29192]			growth	15-40 °C
[Ref.: #29192]			optimum	29 °C

[Ref.: #29192]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29192]

Oxygen tolerance

facultative anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.736

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29192]		NaCl		growth	0-8	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29192]	5-dehydro-D-gluconate ChEBI	+	carbon source
[Ref.: #29192]	gluconate ChEBI	+	carbon source
[Ref.: #29192]	malate ChEBI	+	carbon source
[Ref.: #29192]	nitrate ChEBI	+	reduction

	Enzymes	Enzyme	Enzyme activity	EC number
[Ref.: #29192]		catalase	+	1.11.1.6

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #8190]	Sample type/isolated from	Porteresia coarctata (plant related to wild rice) from mangrove ecosystem
[Ref.: #8190]	Host species	Porteresia coarctata
[Ref.: #8190]	Geographic location (country and/or sea, region)	Pichavaram, Tamil Nadu
[Ref.: #8190]	Country	India
[Ref.: #8190]	Country ISO 3 Code	IND
[Ref.: #8190]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Mangrove
#Host	#Plants	#Herbaceous plants (Grass,Crops)

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence EF643377 (>99% sequence identity) for Enterobacteriaceae from Microbeatlas

Aquatic Samples	517
Soil Samples	85
Animal Samples	2601
Plant Samples	297
Total Samples	3500

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #8190]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #8190]	Mangroveibacter plantisponsor strain MSSRF40 16S ribosomal RNA gene, partial sequence	EF643377	1368	ENA	451513 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Mangrovibacter plantisponsor DSM 19579	GCA_003182475	scaffold	GenBank	451513 tax ID	*
[Ref.: #66792]	Mangrovibacter plantisponsor strain DSM 19579	451513.3	wgs	PATRIC	451513 tax ID	*
[Ref.: #66792]	Mangrovibacter plantisponsor DSM 19579	2770939621	draft	JGI IMG/M	451513 tax ID	*

[Ref.: #29192]

GC-content

50.1 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Mangrovibacter plantisponsor DSM 19579 NCBI: GCA_003182475.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Mangrovibacter plantisponsor DSM 19579 NCBI: GCA_003182475.1
[Ref.: #69480]	flagellated	yes	56.004	no
[Ref.: #69480]	gram-positive	no	98.517	yes
[Ref.: #69480]	anaerobic	no	93.685	yes
[Ref.: #69480]	halophile	no	82.124	no
[Ref.: #69480]	spore-forming	no	94.27	no
[Ref.: #69480]	glucose-util	yes	97.42	no
[Ref.: #69480]	aerobic	no	69.705	yes
[Ref.: #69480]	thermophile	no	99.308	yes
[Ref.: #69480]	motile	yes	90.686	yes
[Ref.: #69480]	glucose-ferment	yes	92.726	no

Availability in culture collections External links

[Ref.: #8190]

Culture collection no.

DSM 19579, LMG 24236

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Mangrovibacter phragmitis sp. nov., an endophyte isolated from the roots of Phragmites karka.	Behera P, Venkata Ramana V, Maharana B, Joseph N, Vaishampayan P, Singh NK, Shouche Y, Bhadury P, Mishra SR, Raina V, Suar M, Pattnaik AK, Rastogi G	Int J Syst Evol Microbiol	10.1099/ijsem.0.001789	2017	*
Phylogeny	Mangrovibacter yixingensis sp. nov., isolated from farmland soil.	Zhang H, Guo SH, Sun B, Zhang J, Cheng MG, Li Q, Hong Q, Huang X	Int J Syst Evol Microbiol	10.1099/ijs.0.000281	2015	*
Phylogeny	Mangrovibacter plantisponsor gen. nov., sp. nov., a nitrogen-fixing bacterium isolated from a mangrove-associated wild rice (Porteresia coarctata Tateoka).	Rameshkumar N, Lang E, Nair S	Int J Syst Evol Microbiol	10.1099/ijs.0.008292-0	2009	*

References

#8190

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 19579

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29192

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25616 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#25616

IJSEM 179 2010 ( DOI 10.1099/ijs.0.008292-0 , PubMed 19648330 )

* These data were automatically processed and therefore are not curated

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Mangrovibacter plantisponsor DSM 19579

Mangrovibacter plantisponsor DSM 19579

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