Strain identifier

BacDive ID: 5242

Type strain: Yes

Species: Cronobacter muytjensii

Strain Designation: 83-07-023, E603, LRA 023 07 83

Culture col. no.: DSM 21870, ATCC 51329, CIP 103581, WDCM 00213

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General

@ref: 16003

BacDive-ID: 5242

DSM-Number: 21870

keywords: motile, gram-negative, mesophilic, aerobe, Bacteria, 16S sequence, genome sequence, rod-shaped

description: Cronobacter muytjensii 83-07-023 is an aerobe, mesophilic, gram-negative bacterium of the family Enterobacteriaceae.

strain history: <- CIP <- R. Mercier, bioMérieux, La Balme-les-Grottes, France; LRA 023 07 83 (Enterobacter sakazakii) <- INSERM, Villeneuve d'Ascq

doi: 10.13145/bacdive5242.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Cronobacter
  • species: Cronobacter muytjensii
  • full scientific name: Cronobacter muytjensii Iversen et al. 2008

@ref: 16003

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Cronobacter

species: Cronobacter muytjensii

full scientific name: Cronobacter muytjensii Iversen et al. 2008

strain designation: 83-07-023, E603, LRA 023 07 83

type strain: yes

Morphology

cell morphology

  • @ref: 32494
  • gram stain: negative
  • cell length: 3 µm
  • cell width: 1 µm
  • cell shape: rod-shaped
  • motility: yes

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
16003TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium535.pdf
41817MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
16003TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium92.pdf
16003COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium693.pdf

culture temp

@refgrowthtypetemperaturerange
16003positivegrowth28mesophilic
32494positivegrowth06-45
41817positivegrowth30mesophilic
16003positivegrowth30mesophilic

culture pH

  • @ref: 32494
  • ability: positive
  • type: growth
  • pH: 05-10

Physiology and metabolism

oxygen tolerance

  • @ref: 32494
  • oxygen tolerance: aerobe

halophily

  • @ref: 32494
  • salt: NaCl
  • growth: positive
  • tested relation: growth
  • concentration: <7 %

metabolite utilization

@refChebi-IDmetaboliteutilization activitykind of utilization tested
3249415792malonate+carbon source
3249417268myo-inositol+carbon source
3249417148putrescine+carbon source
324944853esculin+hydrolysis
3249417632nitrate+reduction

metabolite production

  • @ref: 32494
  • Chebi-ID: 35581
  • metabolite: indole
  • production: yes

metabolite tests

  • @ref: 32494
  • Chebi-ID: 35581
  • metabolite: indole
  • indole test: +

enzymes

  • @ref: 32494
  • value: catalase
  • activity: +
  • ec: 1.11.1.6

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
16003++-++---++++++-+++++-
16003++-++---++-+++-+++++-

Isolation, sampling and environmental information

isolation

  • @ref: 16003
  • country: France
  • origin.country: FRA
  • continent: Europe

Safety information

risk assessment

  • @ref: 16003
  • biosafety level: 2
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Enterobacter sakazakii partial 16S-23S IGS, strain ATCC 51329AM295804154ena28141
20218Enterobacter sakazakii strain ATCC 51329 16S ribosomal RNA gene, partial sequenceAY579153528ena28141
20218Enterobacter sakazakii strain ATCC 51329 16S ribosomal RNA gene, partial sequenceAY7529371480ena28141
20218Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequenceGU1222171507ena1159613
20218Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequenceHM0692261413ena1159613
20218Cronobacter muytjensii strain ATCC 51329 16S ribosomal RNA gene, partial sequenceHQ8804211443ena1159613
16003Cronobacter muytjensii ATCC 51329 strain E603 16S ribosomal RNA gene, partial sequenceEF0598451425ena1159613

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Cronobacter muytjensii ATCC 51329GCA_001277195completencbi1159613
66792Cronobacter muytjensii ATCC 51329GCA_000409285contigncbi1159613
66792Cronobacter muytjensii Cr150GCA_013363965contigncbi413501
66792Cronobacter muytjensii SD83GCA_009938515contigncbi413501
66792Cronobacter muytjensii SD92GCA_009938485contigncbi413501
66792Cronobacter muytjensii MOD1-Md1sGCA_001922855contigncbi413501
66792Cronobacter muytjensii MOD1_GK1257GCA_008805515contigncbi413501
66792Cronobacter muytjensii ATCC 513291159613.3wgspatric1159613
66792Cronobacter muytjensii ATCC 513291159613.6completepatric1159613
66792Cronobacter muytjensii strain MOD1-Md1s413501.8wgspatric413501
66792Cronobacter muytjensii strain MOD1_GK1257413501.11wgspatric413501

External links

@ref: 16003

culture collection no.: DSM 21870, ATCC 51329, CIP 103581, WDCM 00213

straininfo link

@refpassport
20218http://www.straininfo.net/strains/115489
20218http://www.straininfo.net/strains/150551

Reference

@idauthorscataloguedoi/urltitlejournalpubmedID_cross_reference
16003Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 21870)https://www.dsmz.de/collection/catalogue/details/culture/DSM-21870
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
2871410.1099/ijs.0.65577-0
32494Barberan A, Caceres Velazquez H, Jones S, Fierer N.10.1128/mSphere.00237-17Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information28714
41817Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/15394
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)