Serratia plymuthica Grimont 510 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from Water.
Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Yersiniaceae |
| Genus Serratia |
| Species Serratia plymuthica |
| Full scientific name Serratia plymuthica (Lehmann and Neumann 1896) Breed et al. 1948 (Approved Lists 1980) |
| Synonyms (1) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 1721 | REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) | Medium recipe at MediaDive | Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | ||
| 36320 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 121876 | CIP Medium 72 | Medium recipe at CIP | |||
| 121876 | CIP Medium 3 | Medium recipe at CIP |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 92.6 |
| 1721 | CompoundFSH binding inhibitor (FSH=follicle stimulating hormone) |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68368 | 27613 ChEBI | amygdalin | + | fermentation | from API 20E |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 121876 | 16947 ChEBI | citrate | + | carbon source | |
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 68368 | 5291 ChEBI | gelatin | + | hydrolysis | from API 20E |
| 121876 | 17234 ChEBI | glucose | + | fermentation | |
| 121876 | 17234 ChEBI | glucose | + | degradation | |
| 121876 | 606565 ChEBI | hippurate | - | hydrolysis | |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68368 | 62345 ChEBI | L-rhamnose | - | fermentation | from API 20E |
| 121876 | 17716 ChEBI | lactose | - | fermentation | |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 121876 | 15792 ChEBI | malonate | - | assimilation | |
| 121876 | 29864 ChEBI | mannitol | + | fermentation | |
| 68368 | 28053 ChEBI | melibiose | + | fermentation | from API 20E |
| 68368 | 17268 ChEBI | myo-inositol | + | fermentation | from API 20E |
| 121876 | 17632 ChEBI | nitrate | + | reduction | |
| 121876 | 16301 ChEBI | nitrite | - | reduction | |
| 68368 | 18257 ChEBI | ornithine | - | degradation | from API 20E |
| 121876 | 132112 ChEBI | sodium thiosulfate | - | builds gas from | |
| 68368 | 30911 ChEBI | sorbitol | + | fermentation | from API 20E |
| 68368 | 17992 ChEBI | sucrose | + | fermentation | from API 20E |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 121876 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | + | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 121876 | beta-galactosidase | + | 3.2.1.23 | |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 121876 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68382 | esterase (C 4) | + | from API zym | |
| 68382 | esterase lipase (C 8) | + | from API zym | |
| 121876 | gamma-glutamyltransferase | + | 2.3.2.2 | |
| 121876 | gelatinase | - | ||
| 68368 | gelatinase | + | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 121876 | lysine decarboxylase | - | 4.1.1.18 | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 121876 | ornithine decarboxylase | - | 4.1.1.17 | |
| 68368 | ornithine decarboxylase | - | 4.1.1.17 | from API 20E |
| 121876 | oxidase | - | ||
| 121876 | phenylalanine ammonia-lyase | - | 4.3.1.24 | |
| 68382 | trypsin | + | 3.4.21.4 | from API zym |
| 121876 | tryptophan deaminase | - | ||
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 121876 | urease | - | 3.5.1.5 | |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1721 | + | - | - | - | + | - | - | - | - | - | + | + | + | + | + | - | + | + | + | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
Global distribution of 16S sequence AJ233433 (>99% sequence identity) for Serratia from Microbeatlas ![]()
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 124043 | ASM1602767v1 assembly for Serratia plymuthica FDAARGOS_895 | complete | 82996 | 96.11 | ||||
| 67772 | ASM159092v1 assembly for Serratia plymuthica NBRC 102599 | contig | 1218095 | 61.73 | ||||
| 66792 | 28193_B02 assembly for Serratia plymuthica NCTC12961 | complete | 82996 | 53.41 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Serratia plymuthica DSM 4540 16S ribosomal RNA gene, partial sequence | AF286872 | 1464 | 82996 | ||
| 20218 | Serratia plymuthica 16S rRNA gene (strain DSM 4540) | AJ233433 | 1502 | 82996 | ||
| 20218 | Serratia plymuthica gene for 16S rRNA, partial sequence, strain: NBRC 102599 | AB681876 | 1467 | 82996 | ||
| 124043 | Serratia plymuthica strain NBRC 102599 16S ribosomal RNA gene, partial sequence. | MF677865 | 1462 | 82996 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 96.60 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 99.10 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 83.20 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 92.60 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 98.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 95.43 | yes |
| 125438 | aerobic | aerobicⓘ | no | 61.48 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 87.52 | no |
| 125438 | thermophilic | thermophileⓘ | no | 98.50 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 74.49 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Evaluation of the Antifungal Activity of Endophytic and Rhizospheric Bacteria against Grapevine Trunk Pathogens. | Bustamante MI, Elfar K, Eskalen A. | Microorganisms | 10.3390/microorganisms10102035 | 2022 | ||
| Occurrence of disinfectant-resistant bacteria in a fresh-cut vegetables processing facility and their role in protecting Salmonella enteritidis. | Xu JG, Meng J, Bao WJ, Kang JM, Chen JY, Han BZ. | RSC Adv | 10.1039/d0ra09325d | 2021 | ||
| Complete genome sequence of the plant-associated Serratia plymuthica strain AS13. | Neupane S, Finlay RD, Kyrpides NC, Goodwin L, Alstrom S, Lucas S, Land M, Han J, Lapidus A, Cheng JF, Bruce D, Pitluck S, Peters L, Ovchinnikova G, Held B, Han C, Detter JC, Tapia R, Hauser L, Ivanova N, Pagani I, Woyke T, Klenk HP, Hogberg N. | Stand Genomic Sci | 10.4056/sigs.2966299 | 2012 | ||
| Complete genome sequence of Serratia plymuthica strain AS12. | Neupane S, Finlay RD, Alstrom S, Goodwin L, Kyrpides NC, Lucas S, Lapidus A, Bruce D, Pitluck S, Peters L, Ovchinnikova G, Chertkov O, Han J, Han C, Tapia R, Detter JC, Land M, Hauser L, Cheng JF, Ivanova N, Pagani I, Klenk HP, Woyke T, Hogberg N. | Stand Genomic Sci | 10.4056/sigs.2705996 | 2012 | ||
| Characterisation of two quorum sensing systems in the endophytic Serratia plymuthica strain G3: differential control of motility and biofilm formation according to life-style. | Liu X, Jia J, Popat R, Ortori CA, Li J, Diggle SP, Gao K, Camara M. | BMC Microbiol | 10.1186/1471-2180-11-26 | 2011 | ||
| Enzymology | Development of quantitative real-time PCR assays for detection and quantification of surrogate biological warfare agents in building debris and leachate. | Saikaly PE, Barlaz MA, de Los Reyes FL. | Appl Environ Microbiol | 10.1128/aem.00779-07 | 2007 | |
| Enzymology | Molecular method for detection of total coliforms in drinking water samples. | Maheux AF, Boudreau DK, Bisson MA, Dion-Dupont V, Bouchard S, Nkuranga M, Bergeron MG, Rodriguez MJ. | Appl Environ Microbiol | 10.1128/aem.00546-14 | 2014 | |
| Enzymology | Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples. | Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG. | Appl Environ Microbiol | 10.1128/aem.02337-10 | 2011 | |
| Compilation of small ribosomal subunit RNA structures. | Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R. | Nucleic Acids Res | 10.1093/nar/21.13.3025 | 1993 | ||
| Safety of isomaltulose syrup (dried) as a novel food pursuant to Regulation (EU) 2015/2283. | EFSA Panel on Nutrition, Novel Foods and Food Allergens (NDA), Turck D, Bohn T, Castenmiller J, De Henauw S, Hirsch-Ernst KI, Maciuk A, Mangelsdorf I, McArdle HJ, Naska A, Pentieva K, Siani A, Thies F, Tsabouri S, Vinceti M, Aguilera-Gomez M, Cubadda F, Frenzel T, Heinonen M, Marchelli R, Neuhauser-Berthold M, Poulsen M, Prieto Maradona M, Schlatter JR, Siskos A, van Loveren H, Ferreira da Costa L, Albert O, Knutsen HK. | EFSA J | 10.2903/j.efsa.2024.8491 | 2024 | ||
| Genetics | Complete genome sequence of Serratia plymuthica SWSY-3.47. | Takahashi H, Warashina T, Takahashi Y, Tanaka M, Suzuki K, Morita T, Arakawa K. | Microbiol Resour Announc | 10.1128/mra.00815-24 | 2024 | |
| Screening and Identification of Protease-Producing Microorganisms in the Gut of Gryllotalpa orientalis (Orthoptera: Gryllotalpidae). | Zheng X, Zhao L, Wu F, Zhou H, Shi F. | Insects | 10.3390/insects15080629 | 2024 | ||
| Genetics | Genome Sequences of Serratia Strains Revealed Common Genes in Both Serratomolides Gene Clusters. | Marques-Pereira C, Proenca DN, Morais PV. | Biology (Basel) | 10.3390/biology9120482 | 2020 | |
| Isolation, characterization, identification, genomics and analyses of bioaccumulation and biosorption potential of two arsenic-resistant bacteria obtained from natural environments. | Roy V, Saha BK, Adhikary S, Chaki MG, Sarkar M, Pal A. | Sci Rep | 10.1038/s41598-024-56082-6 | 2024 | ||
| Water Soluble Vitamins Enhance the Growth of Microorganisms in Peripheral Parenteral Nutrition Solutions. | Omotani S, Tani K, Nagai K, Hatsuda Y, Mukai J, Myotoku M. | Int J Med Sci | 10.7150/ijms.21424 | 2017 | ||
| Enzymology | Monoterpenes with antibacterial activities from a Cameroonian medicinal plant Canthium Multiflorum (Rubiaceae). | Kouam SF, Ngouonpe AW, Bullach A, Lamshoft M, Kuigoua GM, Spiteller M | Fitoterapia | 10.1016/j.fitote.2013.08.025 | 2013 | |
| Polyphasic Characterisation of Cedecea colo sp. nov., a New Enteric Bacterium Isolated from the Koala Hindgut. | Boath JM, Dakhal S, Van TTH, Moore RJ, Dekiwadia C, Macreadie IG. | Microorganisms | 10.3390/microorganisms8020309 | 2020 | ||
| Phylogeny | Serratia microhaemolytica sp. nov., isolated from an artificial lake in Southern China. | Wang J, Zheng ML, Jiao JY, Wang WJ, Li S, Xiao M, Chen C, Qu PH, Li WJ | Antonie Van Leeuwenhoek | 10.1007/s10482-019-01273-9 | 2019 | |
| Phylogeny | Hafnia psychrotolerans sp. nov., isolated from lake water. | Gu Z, Liu Y, Shen L, Liu X, Xiao N, Jiao N, Liu H, Zhou Y, Zhang S | Int J Syst Evol Microbiol | 10.1099/ijs.0.000049 | 2015 |
| #1721 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4540 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #36320 | ; Curators of the CIP; |
| #46121 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 14509 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #67772 | The University of Coimbra Bacteria Culture Collection (UCCCB) ; Curators of the UCCCB; |
| #68368 | Automatically annotated from API 20E . |
| #68382 | Automatically annotated from API zym . |
| #69479 | João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta . |
| #121876 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103239 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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