Serratia ficaria 4024 | Type strain | DSM 4569, ATCC 33105, CIP 79.23, ICPB 4050, CCUG 14507, NCTC 12148, LMG 7881, JCM 1241

Strain identifier

BacDive ID: 5132

Type strain:

Species: Serratia ficaria

Strain Designation: 4024

Culture col. no.: DSM 4569, ATCC 33105, CIP 79.23, ICPB 4050, CCUG 14507, NCTC 12148, LMG 7881, JCM 1241

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Serratia ficaria 4024 is a mesophilic bacterium that was isolated from fig.

mesophilic
16S sequence
Bacteria

Information on the name and the taxonomic classification.Name and taxonomic classification

	Last LPSN update	10-09-2020 (DD-MM-YYYY)
	Domain	Bacteria
	Phylum	Proteobacteria
	Class	Gammaproteobacteria
	Order	Enterobacterales
	Family	Yersiniaceae
	Genus	Serratia
	Species	Serratia ficaria
	Full Scientific Name (PNU)	Serratia ficaria Grimont et al. 1981

Information on morphological and physiological propertiesMorphology and physiology

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #1775]	7664	+	-	-	-	+	-	-	-	-	+	+	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API® 50CH acid:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Acid from glycerolGLY	Acid from erythritolERY	Acid from D-arabinoseDARA	Acid from L-arabinoseLARA	Acid from D-riboseRIB	Acid from D-xyloseDXYL	Acid from L-xyloseLXYL	Acid from D-adonitolADO	Acid from methyl beta-D-xylopyranosideMDX	Acid from D-galactoseGAL	Acid from D-glucoseGLU	Acid from D-fructoseFRU	Acid from D-mannoseMNE	Acid from L-sorboseSBE	Acid from L-rhamnoseRHA	Acid from dulcitolDUL	Acid from inositolINO	Acid from D-mannitolMAN	Acid from D-sorbitolSOR	Acid from methyl alpha-D-mannopyranosideMDM	Acid from methyl alpha-D-glucopyranosideMDG	Acid from N-acetyl-glucosamineNAG	Acid from amygdalinAMY	Acid from arbutinARB	Acid from esculinESC	Acid from salicinSAL	Acid from cellobioseCEL	Acid from maltoseMAL	Acid from lactoseLAC	Acid from melibioseMEL	Acid from sucroseSAC	Acid from trehaloseTRE	Acid from inulinINU	Acid from melezitoseMLZ	Acid from raffinoseRAF	Acid from starchAMD	Acid from glycogenGLYG	Acid from xylitolXLT	Acid from gentiobioseGEN	Acid from turanoseTUR	Acid from D-lyxoseLYX	Acid from D-tagatoseTAG	Acid from D-fucoseDFUC	Acid from L-fucoseLFUC	Acid from D-arabitolDARL	Acid from L-arabitolLARL	Acid from gluconateGNT	Acid from 2-Ketogluconate2KG	Acid from 5-Ketogluconate5KG
[Ref.: #1775]	4644	-	+	+	+	+	+	+	-	+	-	+	+	+	+	-	+	-	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	-	-	-	+	+	+	-	+	+	+	+	-	-	+

API® 50CH assim:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	ControlQ	Assimilation of glycerolGLY	Assimilation of erythritolERY	Assimilation of D-arabinoseDARA	Assimilation of L-arabinoseLARA	Assimilation of D-riboseRIB	Assimilation of D-xyloseDXYL	Assimilation of L-xyloseLXYL	Assimilation of D-adonitolADO	Assimilation of methyl beta-D-xylopyranosideMDX	Assimilation of D-galactoseGAL	Assimilation of D-glucoseGLU	Assimilation of D-fructoseFRU	Assimilation of D-mannoseMNE	Assimilation of L-sorboseSBE	Assimilation of L-rhamnoseRHA	Assimilation of dulcitolDUL	Assimilation of inositolINO	Assimilation of D-mannitolMAN	Assimilation of sorbitolSOR	Assimilation of methyl alpha-D-mannopyranosideMDM	Assimilation of methyl alpha-D-glucopyranosideMDG	Assimilation of N-acetyl-glucosamineNAG	Assimilation of amygdalinAMY	Assimilation of arbutinARB	Assimilation of esculinESC	Assimilation of salicinSAL	Assimilation of cellobioseCEL	Assimilation of maltoseMAL	Assimilation of lactoseLAC	Assimilation of melibioseMEL	Assimilation of sucroseSAC	Assimilation of trehaloseTRE	Assimilation of inulinINU	Assimilation of melezitoseMLZ	Assimilation of raffinoseRAF	Assimilation of starchAMD	Assimilation of glycogenGLYG	Assimilation of xylitolXLT	Assimilation of gentiobioseGEN	Assimilation of turanoseTUR	Assimilation of D-lyxoseLYX	Assimilation of D-tagatoseTAG	Assimilation of D-fucoseDFUC	Assimilation of L-fucoseLFUC	Assimilation of D-arabitolDARL	Assimilation of L-arabitolLARL	Assimilation of gluconateGNT	Assimilation of 2-Ketogluconate2KG	Assimilation of 5-Ketogluconate5KG
[Ref.: #1775]	30	-	+	+	-	+	+	+	-	-	-	+	+	+	+	-	+	-	+	+	+	-	-	+	-	+	+	+	+	+	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	+	+	+	+	+	+

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #1775]

Culture medium

REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a), 30°C

[Ref.: #1775]

Culture medium growth

[Ref.: #1775]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #33057]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #33057]

Culture medium growth

[Ref.: #33057]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1775]			growth	30 ̊C
[Ref.: #33057]			growth	30 ̊C

[Ref.: #1775]	Temperature range	mesophilic
[Ref.: #33057]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #1775]

Sample type/isolated from

fig

[Ref.: #46119]

Sample type/isolated from

Calimyrna fig,Winters

[Ref.: #46119]

Sampling date

1977

Isolation sources categories

#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Fruit (Seed)

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #1775]

Biosafety level

Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #1775]	16S rRNA gene, Marker Gene (EMBL Direct submission)	Serratia ficaria 16S rRNA gene (strain DSM 4569)	AJ233428 ENA	16S	1495	61651 tax ID
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Serratia ficaria partial gyrB gene for DNA gyrase B subunit strain CIP 79.23T, ATCC 33105T, O-type 1	AJ300541 ENA		972	61651 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 353 from Patent WO0123604	AX109620 ENA		820	61651 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 613 from Patent WO0123604	AX109880 ENA		778	61651 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Serratia ficaria gene for 16S ribosomal RNA, partial sequence	AB004745 ENA	16S	1449	61651 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Serratia ficaria gene for GroES protein homologue, GroEL protein homologue, partial cds	AB008144 ENA		1934	61651 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Serratia ficaria strain LMG 7881 RNA polymerase beta-subunit (rpoB) gene, partial cds	HM359002 ENA		512	61651 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Serratia ficaria strain LMG 7881 ATP synthase beta subunit (atpD) gene, partial cds	JX424914 ENA		642	61651 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Serratia ficaria strain LMG 7881 DNA gyrase (gyrB) gene, partial cds	JX425044 ENA		742	61651 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Serratia ficaria strain LMG 7881 initiation translation factor 2 (infB) gene, partial cds	JX425173 ENA		615	61651 tax ID	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Serratia ficaria strain LMG 7881 RNA polymerase beta subunit (rpoB) gene, partial cds	JX425300 ENA		637	61651 tax ID	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Serratia ficaria gene for 16S rRNA, partial sequence, strain: NBRC 102596	AB681873 ENA	16S	1467	61651 tax ID	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Serratia ficaria partial 16S rRNA gene, strain NCTC 12148	AJ279054 ENA	16S	1362	61651 tax ID	*

Availability in culture collectionsStrain availability

[Ref.: #1775]

Culture collection no.

DSM 4569, ATCC 33105, CIP 79.23, ICPB 4050, CCUG 14507, NCTC 12148, LMG 7881, JCM 1241

[Ref.: #1775]	Strain history	<- CIP <- P.A.D. Grimont; 4024
[Ref.: #33057]	Strain history	1979, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain 4024

[Ref.: #20218]

Associated Passport(s) in StrainInfo

154931, 21451, 229507, 21456

References

#1775

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4569

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#33057 ; Curators of the CIP;
#46119 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 14507
* These References are textmined

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Serratia ficaria in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF