Serratia ficaria (DSM 4569, ATCC 33105, CIP 79.23)

Name: Serratia ficaria (DSM 4569, ATCC 33105, CIP 79.23)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5132

Type strain

Strain Designation 4024

Culture col. no. DSM 4569 ATCC 33105 CIP 79.23 ICPB 4050 CCUG 14507 8 more

NCBI tax ID(s) 1411141 61651

Special Collections DSMZ CCUG JCM CIP

History DSMZ <- CIP <- P.A.D. Grimont; 4024 CIP <- 1979, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain 4024 JCM <-- Y. Kosako 316 <-- R. Sakazaki 316 <-- ATCC 33105 <-- M. P. Starr <-- P. A. D. Grimont 4024. CIP <- 1979, P.A.D. Grimont, Inst. Pasteur, Paris, France: strain 4024

Links

Serratia ficaria 4024 is a motile, rod-shaped bacterium that was isolated from fig.

motile rod-shaped genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 389412

LMG 7881,ATCC 33105,CCM 3418,CCUG 14507,CIP 7923,NCTC 12148,DSM 4569,JCM 1241,CCRC 14809,IAM 13540,KCTC 2921,BCRC 14809,CIP 79.23,NBRC 102596

@ref 20215

Last LPSN update 2026-05-29 08:26:06

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Yersiniaceae

Genus Serratia

Species Serratia ficaria

Full scientific name Serratia ficaria Grimont et al. 1981

BacDive ID	Other strains from **Serratia ficaria** (7)	Type strain
135454	S. ficaria VAL 93, CIP 104255
135828	S. ficaria 4737, CIP 82.15
135962	S. ficaria 4747, CIP 82.16
137759	S. ficaria 4162, CIP 82.17
139095	S. ficaria 23164(90), CIP 103813
143672	S. ficaria CCUG 20935
143673	S. ficaria CCUG 20936

Morphology

Cell morphology

@ref	Cell shape	Gram stain	Confidence
119342	rod-shaped
125438		negative	100
125439		negative	98.233

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1775	REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a)	Medium recipe at MediaDive	Name: REACTIVATION WITH LIQUID MEDIUM 1 (DSMZ Medium 1a) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
33057	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
119342	CIP Medium 3	Medium recipe at CIP
119342	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
1775	positive	growth	30
33057	positive	growth	30
67770	positive	growth	37

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
125439	aerobe	94.732

Spore formation

@ref	Spore formation	Confidence
125439		98.563

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68372	27613 ChEBI	amygdalin	-	assimilation	from API 50CH assim
68371	27613 ChEBI	amygdalin	+	builds acid from	from API 50CH acid
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68372	18305 ChEBI	arbutin	+	assimilation	from API 50CH assim
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68372	17057 ChEBI	cellobiose	+	assimilation	from API 50CH assim
68371	17057 ChEBI	cellobiose	+	builds acid from	from API 50CH acid
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68372	17108 ChEBI	D-arabinose	-	assimilation	from API 50CH assim
68371	17108 ChEBI	D-arabinose	+	builds acid from	from API 50CH acid
68372	18333 ChEBI	D-arabitol	+	assimilation	from API 50CH assim
68371	18333 ChEBI	D-arabitol	+	builds acid from	from API 50CH acid
68372	15824 ChEBI	D-fructose	+	assimilation	from API 50CH assim
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68372	28847 ChEBI	D-fucose	-	assimilation	from API 50CH assim
68371	28847 ChEBI	D-fucose	+	builds acid from	from API 50CH acid
68372	12936 ChEBI	D-galactose	+	assimilation	from API 50CH assim
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68372	17634 ChEBI	D-glucose	+	assimilation	from API 50CH assim
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68372	62318 ChEBI	D-lyxose	-	assimilation	from API 50CH assim
68371	62318 ChEBI	D-lyxose	+	builds acid from	from API 50CH acid
68372	16899 ChEBI	D-mannitol	+	assimilation	from API 50CH assim
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68372	16024 ChEBI	D-mannose	+	assimilation	from API 50CH assim
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68372	16988 ChEBI	D-ribose	+	assimilation	from API 50CH assim
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	+	builds acid from	from API 50CH acid
68372	16443 ChEBI	D-tagatose	-	assimilation	from API 50CH assim
68371	16443 ChEBI	D-tagatose	-	builds acid from	from API 50CH acid
68372	65327 ChEBI	D-xylose	+	assimilation	from API 50CH assim
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68372	17113 ChEBI	erythritol	+	assimilation	from API 50CH assim
68371	17113 ChEBI	erythritol	+	builds acid from	from API 50CH acid
68372	4853 ChEBI	esculin	+	assimilation	from API 50CH assim
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68372	16813 ChEBI	galactitol	-	assimilation	from API 50CH assim
68371	16813 ChEBI	galactitol	-	builds acid from	from API 50CH acid
68368	5291 ChEBI	gelatin	+	hydrolysis	from API 20E
68372	28066 ChEBI	gentiobiose	+	assimilation	from API 50CH assim
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68372	24265 ChEBI	gluconate	+	assimilation	from API 50CH assim
68371	24265 ChEBI	gluconate	-	builds acid from	from API 50CH acid
68372	17754 ChEBI	glycerol	+	assimilation	from API 50CH assim
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68372	28087 ChEBI	glycogen	-	assimilation	from API 50CH assim
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68372	15443 ChEBI	inulin	-	assimilation	from API 50CH assim
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68372	30849 ChEBI	L-arabinose	+	assimilation	from API 50CH assim
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68372	18403 ChEBI	L-arabitol	+	assimilation	from API 50CH assim
68371	18403 ChEBI	L-arabitol	+	builds acid from	from API 50CH acid
68372	18287 ChEBI	L-fucose	+	assimilation	from API 50CH assim
68371	18287 ChEBI	L-fucose	+	builds acid from	from API 50CH acid
68372	62345 ChEBI	L-rhamnose	+	assimilation	from API 50CH assim
68371	62345 ChEBI	L-rhamnose	+	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68372	17266 ChEBI	L-sorbose	-	assimilation	from API 50CH assim
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68372	65328 ChEBI	L-xylose	-	assimilation	from API 50CH assim
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
68372	17716 ChEBI	lactose	-	assimilation	from API 50CH assim
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	-	degradation	from API 20E
68372	17306 ChEBI	maltose	+	assimilation	from API 50CH assim
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
68372	6731 ChEBI	melezitose	+	assimilation	from API 50CH assim
68371	6731 ChEBI	melezitose	+	builds acid from	from API 50CH acid
68372	28053 ChEBI	melibiose	+	assimilation	from API 50CH assim
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
68372	320061 ChEBI	methyl alpha-D-glucopyranoside	-	assimilation	from API 50CH assim
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
68372	43943 ChEBI	methyl alpha-D-mannoside	-	assimilation	from API 50CH assim
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68372	74863 ChEBI	methyl beta-D-xylopyranoside	-	assimilation	from API 50CH assim
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68372	17268 ChEBI	myo-inositol	+	assimilation	from API 50CH assim
68371	17268 ChEBI	myo-inositol	+	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	+	fermentation	from API 20E
68372	59640 ChEBI	N-acetylglucosamine	+	assimilation	from API 50CH assim
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
68368	17632 ChEBI	nitrate	+	reduction	from API 20E
68368	18257 ChEBI	ornithine	-	degradation	from API 20E
68372	0 ChEBI	Potassium 2-ketogluconate	+	assimilation	from API 50CH assim
68371	0 ChEBI	Potassium 2-ketogluconate	-	builds acid from	from API 50CH acid
68372	0 ChEBI	Potassium 5-ketogluconate	+	assimilation	from API 50CH assim
68371	0 ChEBI	Potassium 5-ketogluconate	+	builds acid from	from API 50CH acid
68372	16634 ChEBI	raffinose	+	assimilation	from API 50CH assim
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68372	15963 ChEBI	ribitol	-	assimilation	from API 50CH assim
68371	15963 ChEBI	ribitol	+	builds acid from	from API 50CH acid
68372	17814 ChEBI	salicin	+	assimilation	from API 50CH assim
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
68372	30911 ChEBI	sorbitol	+	assimilation	from API 50CH assim
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68372	28017 ChEBI	starch	-	assimilation	from API 50CH assim
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68372	17992 ChEBI	sucrose	+	assimilation	from API 50CH assim
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	+	fermentation	from API 20E
68372	27082 ChEBI	trehalose	+	assimilation	from API 50CH assim
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68372	32528 ChEBI	turanose	+	assimilation	from API 50CH assim
68371	32528 ChEBI	turanose	+	builds acid from	from API 50CH acid
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68372	17151 ChEBI	xylitol	-	assimilation	from API 50CH assim
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	17997 ChEBI	dinitrogen	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E
68368	16301 ChEBI	nitrite	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	+		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	+		from API 20E
68368	lysine decarboxylase	-	4.1.1.18	from API 20E
68368	ornithine decarboxylase	-	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	citric acid cycle	100	14 of 14
66794	coenzyme A metabolism	100	4 of 4
66794	acetoin degradation	100	3 of 3
66794	formaldehyde oxidation	100	3 of 3
66794	enterobactin biosynthesis	100	3 of 3
66794	phenylacetate degradation (aerobic)	100	5 of 5
66794	starch degradation	100	10 of 10
66794	vitamin K metabolism	100	5 of 5
66794	ribulose monophosphate pathway	100	2 of 2
66794	gallate degradation	100	5 of 5
66794	biotin biosynthesis	100	4 of 4
66794	adipate degradation	100	2 of 2
66794	ethanol fermentation	100	2 of 2
66794	L-lactaldehyde degradation	100	3 of 3
66794	threonine metabolism	100	10 of 10
66794	pentose phosphate pathway	100	11 of 11
66794	molybdenum cofactor biosynthesis	100	9 of 9
66794	sulfopterin metabolism	100	4 of 4
66794	acetate fermentation	100	4 of 4
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	butanoate fermentation	100	4 of 4
66794	valine metabolism	100	9 of 9
66794	tetrahydrofolate metabolism	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	ketogluconate metabolism	100	8 of 8
66794	aerobactin biosynthesis	100	1 of 1
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	taurine degradation	100	1 of 1
66794	palmitate biosynthesis	100	22 of 22
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	ppGpp biosynthesis	100	4 of 4
66794	gluconeogenesis	100	8 of 8
66794	lactate fermentation	100	4 of 4
66794	suberin monomers biosynthesis	100	2 of 2
66794	lipoate biosynthesis	100	5 of 5
66794	heme metabolism	92.86	13 of 14
66794	photosynthesis	92.86	13 of 14
66794	glutathione metabolism	92.86	13 of 14
66794	proline metabolism	90.91	10 of 11
66794	4-hydroxyphenylacetate degradation	90	9 of 10
66794	Entner Doudoroff pathway	90	9 of 10
66794	glutamate and glutamine metabolism	89.29	25 of 28
66794	serine metabolism	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	4-hydroxymandelate degradation	88.89	8 of 9
66794	lipid A biosynthesis	88.89	8 of 9
66794	methionine metabolism	88.46	23 of 26
66794	degradation of sugar acids	88	22 of 25
66794	isoleucine metabolism	87.5	7 of 8
66794	degradation of sugar alcohols	87.5	14 of 16
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	purine metabolism	87.23	82 of 94
66794	ubiquinone biosynthesis	85.71	6 of 7
66794	reductive acetyl coenzyme A pathway	85.71	6 of 7
66794	vitamin B1 metabolism	84.62	11 of 13
66794	phenylalanine metabolism	84.62	11 of 13
66794	NAD metabolism	83.33	15 of 18
66794	glycolate and glyoxylate degradation	83.33	5 of 6
66794	glycogen metabolism	80	4 of 5
66794	cellulose degradation	80	4 of 5
66794	pyrimidine metabolism	80	36 of 45
66794	phenol degradation	80	16 of 20
66794	arginine metabolism	79.17	19 of 24
66794	tryptophan metabolism	78.95	30 of 38
66794	allantoin degradation	77.78	7 of 9
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	urea cycle	76.92	10 of 13
66794	leucine metabolism	76.92	10 of 13
66794	glycolysis	76.47	13 of 17
66794	alanine metabolism	75.86	22 of 29
66794	glycogen biosynthesis	75	3 of 4
66794	CMP-KDO biosynthesis	75	3 of 4
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	oxidative phosphorylation	73.63	67 of 91
66794	flavin biosynthesis	73.33	11 of 15
66794	3-phenylpropionate degradation	73.33	11 of 15
66794	peptidoglycan biosynthesis	73.33	11 of 15
66794	histidine metabolism	72.41	21 of 29
66794	degradation of hexoses	72.22	13 of 18
66794	degradation of pentoses	71.43	20 of 28
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	propanol degradation	71.43	5 of 7
66794	non-pathway related	71.05	27 of 38
66794	degradation of aromatic, nitrogen containing compounds	66.67	8 of 12
66794	cyanate degradation	66.67	2 of 3
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	octane oxidation	66.67	2 of 3
66794	tyrosine metabolism	64.29	9 of 14
66794	vitamin B6 metabolism	63.64	7 of 11
66794	metabolism of disaccharids	63.64	7 of 11
66794	carnitine metabolism	62.5	5 of 8
66794	cysteine metabolism	61.11	11 of 18
66794	methylglyoxal degradation	60	3 of 5
66794	propionate fermentation	60	6 of 10
66794	metabolism of amino sugars and derivatives	60	3 of 5
66794	lysine metabolism	59.52	25 of 42
66794	lipid metabolism	58.06	18 of 31
66794	isoprenoid biosynthesis	57.69	15 of 26
66794	d-mannose degradation	55.56	5 of 9
66794	nitrate assimilation	55.56	5 of 9
66794	phenylpropanoid biosynthesis	53.85	7 of 13
66794	polyamine pathway	52.17	12 of 23
66794	androgen and estrogen metabolism	50	8 of 16
66794	glycine metabolism	50	5 of 10
66794	cyclohexanol degradation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	dTDPLrhamnose biosynthesis	50	4 of 8
66794	pantothenate biosynthesis	50	3 of 6
66794	phenylmercury acetate degradation	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	kanosamine biosynthesis II	50	1 of 2
66794	quinate degradation	50	1 of 2
66794	myo-inositol biosynthesis	50	5 of 10
66794	d-xylose degradation	45.45	5 of 11
66794	benzoyl-CoA degradation	42.86	3 of 7
66794	ascorbate metabolism	40.91	9 of 22
66794	glycine betaine biosynthesis	40	2 of 5
66794	coenzyme M biosynthesis	40	4 of 10
66794	arachidonate biosynthesis	40	2 of 5
66794	bacilysin biosynthesis	40	2 of 5
66794	creatinine degradation	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	3-chlorocatechol degradation	40	2 of 5
66794	sulfate reduction	38.46	5 of 13
66794	methane metabolism	33.33	1 of 3
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	1,4-dihydroxy-6-naphthoate biosynthesis	33.33	2 of 6
66794	sphingosine metabolism	33.33	2 of 6
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	phosphatidylethanolamine bioynthesis	30.77	4 of 13
66794	arachidonic acid metabolism	27.78	5 of 18
66794	dolichyl-diphosphooligosaccharide biosynthesis	27.27	3 of 11
66794	catecholamine biosynthesis	25	1 of 4
66794	alginate biosynthesis	25	1 of 4
66794	bile acid biosynthesis, neutral pathway	23.53	4 of 17

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
1775	+	-	-	-	+	-	-	-	-	+	+	+	+	+	+	+	+	+	+	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
1775	+	-	-	-	+	-	-	-	-	+	+	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
1775	-	+	+	+	+	+	+	-	+	-	+	+	+	+	-	+	-	+	+	+	-	+	+	+	+	+	+	+	+	+	+	+	+	-	+	+	-	-	-	+	+	+	-	+	+	+	+	-	-	+

API 50CHas

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
1775	-	+	+	-	+	+	+	-	-	-	+	+	+	+	-	+	-	+	+	+	-	-	+	-	+	+	+	+	+	-	+	+	+	-	+	+	-	-	-	+	+	-	-	-	+	+	+	+	+	+

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Tree
#Host Body-Site	#Plant	#Fruit (Seed)

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent	Sampling date
1775	fig
46119	Calimyrna fig,Winters					1977
67770	Smyrna figs
119342	Calimyrna fig	Winters, California	United States of America	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1775	1	Risk group (German classification) According to TRBA 466
119342	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	50465_F01 assembly for Serratia ficaria NCTC12148	complete	GCA_900187015	61651.3	2773857830	61651	99.36
67770	ASM159088v1 assembly for Serratia ficaria NBRC 102596	contig	GCA_001590885	1411141.3	2731957628	1411141	61.19

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Serratia ficaria gene for 16S ribosomal RNA, partial sequence	AB004745	1449	61651
20218	Serratia ficaria gene for 16S rRNA, partial sequence, strain: NBRC 102596	AB681873	1467	61651
20218	Serratia ficaria partial 16S rRNA gene, strain NCTC 12148	AJ279054	1362	61651
1775	Serratia ficaria 16S rRNA gene (strain DSM 4569)	AJ233428	1495	61651

GC content

@ref	GC-content (mol%)	Method
67770	59.4-59.8	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: 50465_F01 assembly for Serratia ficaria NCTC12148
BV-BRC: 61651.3

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	94.73	no
125439	gram_stain	BacteriaNetⓘ	negative	98.23	no
125439	motility	BacteriaNetⓘ	yes	77.32	no
125439	spore_formation	BacteriaNetⓘ	no	98.56	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Serratia ficaria NCTC12148
NCBI: GCA_900187015.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	100.00	no
125438	anaerobic	anaerobicⓘ	no	99.34	no
125438	aerobic	aerobicⓘ	no	61.35	no
125438	spore-forming	spore-formingⓘ	no	86.44	no
125438	thermophilic	thermophileⓘ	no	98.50	yes
125438	flagellated	motile2+ⓘ	yes	75.85	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Phylogenetic insights and antimicrobial biosynthetic potential of Serratia sp. XAFb12 and Pseudomonas sp. XAFb13 from Xylopia aethiopica.	Ezeobiora CE, Igbokwe NH, Amin DH, Okpalanwa CF, Stephen CM, Mendie UE.	Braz J Microbiol	10.1007/s42770-023-01213-w	2024
Metabolism	Impacts of labile organic carbon concentration on organic and inorganic nitrogen utilization by a stream biofilm bacterial community.	Ghosh S, Leff LG.	Appl Environ Microbiol	10.1128/aem.01694-13	2013
Enzymology	Development of quantitative real-time PCR assays for detection and quantification of surrogate biological warfare agents in building debris and leachate.	Saikaly PE, Barlaz MA, de Los Reyes FL.	Appl Environ Microbiol	10.1128/aem.00779-07	2007
Metabolism	Dual labeling of Pseudomonas putida with fluorescent proteins for in situ monitoring of conjugal transfer of the TOL plasmid.	Nancharaiah YV, Wattiau P, Wuertz S, Bathe S, Mohan SV, Wilderer PA, Hausner M.	Appl Environ Microbiol	10.1128/aem.69.8.4846-4852.2003	2003
Enzymology	Rapid identification of Yersinia enterocolitica in blood by the 5' nuclease PCR assay.	Sen K.	J Clin Microbiol	10.1128/jcm.38.5.1953-1958.2000	2000
	Development and evaluation of oligonucleotide chip based on the 16S-23S rRNA gene spacer region for detection of pathogenic microorganisms associated with sepsis.	Kim CM, Song ES, Jang HJ, Kim HJ, Lee S, Shin JH, Kim SJ, Jeong SH, Jeong J, Koh K, Choi GE, Lee EY, Chang CL.	J Clin Microbiol	10.1128/jcm.01130-09	2010
Enzymology	Molecular method for detection of total coliforms in drinking water samples.	Maheux AF, Boudreau DK, Bisson MA, Dion-Dupont V, Bouchard S, Nkuranga M, Bergeron MG, Rodriguez MJ.	Appl Environ Microbiol	10.1128/aem.00546-14	2014
Metabolism	gfp-based N-acyl homoserine-lactone sensor systems for detection of bacterial communication.	Andersen JB, Heydorn A, Hentzer M, Eberl L, Geisenberger O, Christensen BB, Molin S, Givskov M.	Appl Environ Microbiol	10.1128/aem.67.2.575-585.2001	2001
Enzymology	Design and evaluation of 16S rRNA sequence based oligonucleotide probes for the detection and quantification of Comamonas testosteroni in mixed microbial communities.	Bathe S, Hausner M.	BMC Microbiol	10.1186/1471-2180-6-54	2006
Enzymology	Description and evaluation of the semiautomated 4-hour ATB 32E method for identification of members of the family Enterobacteriaceae.	Freney J, Herve C, Desmonceaux M, Allard F, Boeufgras JM, Monget D, Fleurette J.	J Clin Microbiol	10.1128/jcm.29.1.138-141.1991	1991
Enzymology	Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples.	Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02337-10	2011
	Single cell time-resolved quorum responses reveal dependence on cell density and configuration.	Whitaker RD, Pember S, Wallace BC, Brodley CE, Walt DR.	J Biol Chem	10.1074/jbc.m111.239897	2011
	Pyrazines responsible for the potatolike odor produced by some serratia and cedecea strains.	Gallois A, Grimont PA.	Appl Environ Microbiol	10.1128/aem.50.4.1048-1051.1985	1985
	Compilation of small ribosomal subunit RNA structures.	Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R.	Nucleic Acids Res	10.1093/nar/21.13.3025	1993
Genetics	Systematic analysis of plasmids of the Serratia marcescens complex using 142 closed genomes.	Nagano DS, Taniguchi I, Ono T, Nakamura K, Gotoh Y, Hayashi T.	Microb Genom	10.1099/mgen.0.001135	2023
Genetics	Genome sequence of the entomopathogenic Serratia entomophila isolate 626 and characterisation of the species specific itaconate degradation pathway.	Vaughan AL, Altermann E, Glare TR, Hurst MRH.	BMC Genomics	10.1186/s12864-022-08938-2	2022
Phylogeny	PCR Primer Design for 16S rRNAs for Experimental Horizontal Gene Transfer Test in Escherichia coli.	Miyazaki K, Sato M, Tsukuda M.	Front Bioeng Biotechnol	10.3389/fbioe.2017.00014	2017
Phylogeny	Serratia vespertilionis (Garcia-Fraile et al. 2015) is a later heterotypic synonym of Serratia ficaria (Grimont et al. 1981).	Garcia-Fraile P, Sproer C, Chesneau O, Criscuolo A, Lang E, Clermont D	Int J Syst Evol Microbiol	10.1099/ijsem.0.003996	2020
Phylogeny	Serratia microhaemolytica sp. nov., isolated from an artificial lake in Southern China.	Wang J, Zheng ML, Jiao JY, Wang WJ, Li S, Xiao M, Chen C, Qu PH, Li WJ	Antonie Van Leeuwenhoek	10.1007/s10482-019-01273-9	2019
Phylogeny	Serratia myotis sp. nov. and Serratia vespertilionis sp. nov., isolated from bats hibernating in caves.	Garcia-Fraile P, Chudickova M, Benada O, Pikula J, Kolarik M	Int J Syst Evol Microbiol	10.1099/ijs.0.066407-0	2014

References

#1775	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4569
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#33057	; Curators of the CIP;
#46119	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 14507
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68372	Automatically annotated from API 50CH assim .
#119342	Collection of Institut Pasteur ; Curators of the CIP; CIP 79.23
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

Content

About us

Serratia ficaria (DSM 4569, ATCC 33105, CIP 79.23)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Metabolite production

Metabolite tests

Enzymes

Pathway annotation

API 20E

API 50CHac

API 50CHas

Isolation, sampling and environmental information

Isolation source categories

Isolation

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_900187015

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

Help

Social Media