Serratia fonticola (DSM 4576, ATCC 29844, CIP 78.64)

Name: Serratia fonticola (DSM 4576, ATCC 29844, CIP 78.64)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5133

Type strain

Strain Designation 2.78, 2-78, CUEMT 77-165

Culture col. no. DSM 4576 ATCC 29844 CIP 78.64 2.78 CUETM 77.165 13 more

NCBI tax ID(s) 1378072 47917

Special Collections DSMZ CCUG JCM CIP

History <- CIP <- C. Richard; 2.78 <- H. Leclerc; CUETM 77.165 Y. Kosako 321 <-- R. Sakazaki 321 <-- ATCC 29844 <-- H. Leclerc. CIP <- 1978, C. Richard, Inst. Pasteur, Paris, France: strain 2-78 <- H. Leclerc, Inst. Pasteur, Lille, France: strain CUEMT 77-165

Links

Serratia fonticola 2.78 is a facultative anaerobe, mesophilic, Gram-negative prokaryote that was isolated from water.

Gram-negative motile rod-shaped facultative anaerobe mesophilic genome sequence 16S sequence

Name and taxonomic classification

SI-ID 389408

LMG 7882,ATCC 29844,CCM 3407,CCUG 14186,IAM 1242,DSM 4576,JCM 1242,CCRC 14810,IAM 13541,KCTC 2922,CCUG 37824,NCTC 12965,HAMBI 1274,BCRC 14810,CIP 78.64,NBRC 102597,CNCTC 5954

@ref 20215

Last LPSN update 2025-12-16 09:47:59

Domain Pseudomonadati

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Yersiniaceae

Genus Serratia

Species Serratia fonticola

Full scientific name Serratia fonticola Gavini et al. 1979 (Approved Lists 1980)

Synonyms (1)

Serratia glossinae

BacDive ID	Other strains from **Serratia fonticola** (26)	Type strain
5134	S. fonticola V 147, DSM 9663
5135	S. fonticola S5/1-689, DSM 9664
5169	S. fonticola C1, DSM 22080, CCM 7984, CCUG 57457, CIP ...
131924	S. fonticola H1w, DSM 103283
131925	S. fonticola H1n, DSM 103300
135292	S. fonticola LRA 047 01 80, CIP 103580, ATCC 29845
135510	S. fonticola 755.85, CIP 101874
137150	S. fonticola 78.1034, CIP 78.67
143782	S. fonticola CCUG 21217
143783	S. fonticola CCUG 21218
144943	S. fonticola CCUG 27226
145915	S. fonticola CCUG 29909
145916	S. fonticola CCUG 29910
145917	S. fonticola CCUG 29911
145918	S. fonticola CCUG 29912
145919	S. fonticola CCUG 29913
145920	S. fonticola CCUG 29914
145921	S. fonticola CCUG 29915
145922	S. fonticola CCUG 29916
146439	S. fonticola CCUG 31137
146985	S. fonticola CCUG 32598
147010	S. fonticola CCUG 32640
148933	S. fonticola CCUG 36603
148934	S. fonticola CCUG 36604
148935	S. fonticola CCUG 36605
149860	S. fonticola CCUG 38570

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Confidence
119420	negative	rod-shaped
125438	negative		99
125439	negative		97.1

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
1777	NUTRIENT AGAR (DSMZ Medium 1)	Medium recipe at MediaDive	Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water
37710	MEDIUM 72- for trypto casein soja agar		Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
1777	TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)	Medium recipe at MediaDive	Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
119420	CIP Medium 72	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)	Range
1777	positive	growth	28	mesophilic
1777	positive	growth	30	mesophilic
37710	positive	growth	30	mesophilic
67770	positive	growth	37	mesophilic
119420	positive	growth	5-41

Physiology and metabolism

Oxygen tolerance

119420

Oxygen tolerancefacultative anaerobe

Spore formation

@ref	Spore formation	Confidence
125439		94.5

Compound production

1777

CompoundFSH binding inhibitor (FSH=follicle stimulating hormone)

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68371	27613 ChEBI	amygdalin	-	builds acid from	from API 50CH acid
68368	27613 ChEBI	amygdalin	+	fermentation	from API 20E
68371	18305 ChEBI	arbutin	+	builds acid from	from API 50CH acid
68368	29016 ChEBI	arginine	-	hydrolysis	from API 20E
68371	17057 ChEBI	cellobiose	-	builds acid from	from API 50CH acid
119420	16947 ChEBI	citrate	+	carbon source
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68371	17108 ChEBI	D-arabinose	-	builds acid from	from API 50CH acid
68371	18333 ChEBI	D-arabitol	+	builds acid from	from API 50CH acid
68371	15824 ChEBI	D-fructose	+	builds acid from	from API 50CH acid
68371	28847 ChEBI	D-fucose	-	builds acid from	from API 50CH acid
68371	12936 ChEBI	D-galactose	+	builds acid from	from API 50CH acid
68371	17634 ChEBI	D-glucose	+	builds acid from	from API 50CH acid
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68371	62318 ChEBI	D-lyxose	-	builds acid from	from API 50CH acid
68371	16899 ChEBI	D-mannitol	+	builds acid from	from API 50CH acid
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68371	16024 ChEBI	D-mannose	+	builds acid from	from API 50CH acid
68371	16988 ChEBI	D-ribose	+	builds acid from	from API 50CH acid
68371	17924 ChEBI	D-sorbitol	+	builds acid from	from API 50CH acid
68371	16443 ChEBI	D-tagatose	+	builds acid from	from API 50CH acid
68371	65327 ChEBI	D-xylose	+	builds acid from	from API 50CH acid
68371	4853 ChEBI	esculin	+	builds acid from	from API 50CH acid
68371	16813 ChEBI	galactitol	+	builds acid from	from API 50CH acid
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68371	28066 ChEBI	gentiobiose	+	builds acid from	from API 50CH acid
68371	24265 ChEBI	gluconate	+	builds acid from	from API 50CH acid
119420	17234 ChEBI	glucose	+	fermentation
68371	17754 ChEBI	glycerol	+	builds acid from	from API 50CH acid
68371	28087 ChEBI	glycogen	-	builds acid from	from API 50CH acid
68371	15443 ChEBI	inulin	-	builds acid from	from API 50CH acid
68371	30849 ChEBI	L-arabinose	+	builds acid from	from API 50CH acid
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68371	18403 ChEBI	L-arabitol	+	builds acid from	from API 50CH acid
68371	18287 ChEBI	L-fucose	-	builds acid from	from API 50CH acid
68371	62345 ChEBI	L-rhamnose	+	builds acid from	from API 50CH acid
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68371	17266 ChEBI	L-sorbose	-	builds acid from	from API 50CH acid
68371	65328 ChEBI	L-xylose	-	builds acid from	from API 50CH acid
119420	17716 ChEBI	lactose	-	fermentation
68371	17716 ChEBI	lactose	+	builds acid from	from API 50CH acid
68368	25094 ChEBI	lysine	+	degradation	from API 20E
119420	15792 ChEBI	malonate	+	assimilation
68371	17306 ChEBI	maltose	+	builds acid from	from API 50CH acid
119420	29864 ChEBI	mannitol	+	fermentation
68371	6731 ChEBI	melezitose	-	builds acid from	from API 50CH acid
68371	28053 ChEBI	melibiose	+	builds acid from	from API 50CH acid
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
68371	320061 ChEBI	methyl alpha-D-glucopyranoside	+	builds acid from	from API 50CH acid
68371	43943 ChEBI	methyl alpha-D-mannoside	-	builds acid from	from API 50CH acid
68371	74863 ChEBI	methyl beta-D-xylopyranoside	-	builds acid from	from API 50CH acid
68371	17268 ChEBI	myo-inositol	+	builds acid from	from API 50CH acid
68368	17268 ChEBI	myo-inositol	+	fermentation	from API 20E
68371	59640 ChEBI	N-acetylglucosamine	+	builds acid from	from API 50CH acid
119420	17632 ChEBI	nitrate	+	reduction
119420	16301 ChEBI	nitrite	+	reduction
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68371		Potassium 5-ketogluconate	-	builds acid from	from API 50CH acid
68371	16634 ChEBI	raffinose	+	builds acid from	from API 50CH acid
68371	15963 ChEBI	ribitol	+	builds acid from	from API 50CH acid
68371	17814 ChEBI	salicin	+	builds acid from	from API 50CH acid
119420	132112 ChEBI	sodium thiosulfate	-	builds gas from
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68371	28017 ChEBI	starch	-	builds acid from	from API 50CH acid
68371	17992 ChEBI	sucrose	+	builds acid from	from API 50CH acid
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68371	27082 ChEBI	trehalose	+	builds acid from	from API 50CH acid
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E
68371	17151 ChEBI	xylitol	-	builds acid from	from API 50CH acid

Antibiotic resistance

@ref	Metabolite	Is sensitive	Is resistant
119420	0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
119420	35581 ChEBI	indole
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Methylred-test	Indole test
119420	15688 ChEBI	acetoin	-
68368	15688 ChEBI	acetoin	-			from API 20E
119420	17234 ChEBI	glucose		+
68368	35581 ChEBI	indole			-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68382	acid phosphatase	+	3.1.3.2	from API zym
119420	alcohol dehydrogenase	-	1.1.1.1
68382	alkaline phosphatase	+	3.1.3.1	from API zym
68382	alpha-chymotrypsin	-	3.4.21.1	from API zym
68382	alpha-fucosidase	-	3.2.1.51	from API zym
68382	alpha-galactosidase	+	3.2.1.22	from API zym
68382	alpha-glucosidase	+	3.2.1.20	from API zym
68382	alpha-mannosidase	-	3.2.1.24	from API zym
68368	arginine dihydrolase	-	3.5.3.6	from API 20E
68382	beta-galactosidase	+	3.2.1.23	from API zym
119420	beta-galactosidase	+	3.2.1.23
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68382	beta-glucosidase	+	3.2.1.21	from API zym
68382	beta-glucuronidase	+	3.2.1.31	from API zym
119420	catalase	+	1.11.1.6
68382	cystine arylamidase	-	3.4.11.3	from API zym
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68382	esterase (C 4)	+		from API zym
68382	esterase lipase (C 8)	+		from API zym
119420	gelatinase	-
68368	gelatinase	-		from API 20E
68382	leucine arylamidase	+	3.4.11.1	from API zym
68382	lipase (C 14)	-		from API zym
119420	lysine decarboxylase	+	4.1.1.18
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68382	N-acetyl-beta-glucosaminidase	+	3.2.1.52	from API zym
68382	naphthol-AS-BI-phosphohydrolase	+		from API zym
119420	ornithine decarboxylase	+	4.1.1.17
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
119420	oxidase	-
119420	phenylalanine ammonia-lyase	-	4.3.1.24
68382	trypsin	+	3.4.21.4	from API zym
119420	tryptophan deaminase	-
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
119420	urease	-	3.5.1.5
68368	urease	-	3.5.1.5	from API 20E
68382	valine arylamidase	+		from API zym

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
1777	+	-	+	+	+	-	-	-	-	-	-	+	+	+	+	+	-	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

API zym

@ref	Control	Alkaline phosphatase	Esterase (C 4)	2-naphtyl caprylateEsterase Lipase (C 8)	Lipase (C 14)	L-leucyl-2-naphthylamideLeucine arylamidase	L-valyl-2-naphthylamideValine arylamidase	L-cystyl-2-naphthylamideCystine arylamidase	Trypsin	alpha- Chymotrypsin	Acid phosphatase	Naphthol-AS-BI-phosphateNaphthol-AS-BI-phosphohydrolase	alpha- Galactosidase	beta- Galactosidase	beta- Glucuronidase	alpha- Glucosidase	beta- Glucosidase	N-acetyl-beta- glucosaminidase	alpha- Mannosidase	alpha- Fucosidase
119420	-	+	+	+	-	+	+	-	+	-	+	+	+	+	+	+	+	+	-	-

API 50CHac

@ref	ControlQ	GLY	ERY	DARA	LARA	RIB	DXYL	LXYL	ADO	MDX	GAL	GLU	FRU	MNE	SBE	RHA	DUL	INO	MAN	SOR	MDM	MDG	NAG	AMY	ARB	ESC	SAL	CEL	MAL	LAC	MEL	SAC	TRE	INU	MLZ	RAF	AMD	GLYG	XLT	GEN	TUR	LYX	TAG	DFUC	LFUC	DARL	LARL	GNT	2KG	5KG
119420	not determinedn.d.	+	+/-	-	+	+	+	-	+	-	+	+	+	+	-	+	+	+	+	+	-	+	+	-	+	+	+	-	+	+	+	+	+	-	-	+	-	-	-	+	+/-	-	+	-	-	+	+	+	+/-	-

API biotype100

@ref	ControlQ	D-glucose as carbon sourceGLU	D-fructose as carbon sourceFRU	D-galactose as carbon sourceGAL	D-trehalose as carbon sourceTRE	D-mannose as carbon sourceMNE	L-sorbose as carbon sourceSBE	D-melibiose as carbon sourceMEL	sucrose as carbon sourceSAC	D-raffinose as carbon sourceRAF	maltotriose as carbon sourceMTE	maltose as carbon sourceMAL	lactose as carbon sourceLAC	lactulose as carbon sourceLTE	1-O-methyl-beta-galactopyranoside as carbon sourceMbGa	1-O-methyl-alpha-galactopyranoside as carbon sourceMaGa	D-cellobiose as carbon sourceCEL	gentiobiose as carbon sourceGEN	1-O-methyl-beta-D-glucopyranoside as carbon sourceMbGu	esculin as carbon sourceESC	D-ribose as carbon sourceRIB	L-arabinose as carbon sourceARA	D-xylose as carbon sourceXYL	palatinose as carbon sourcePLE	L-rhamnose as carbon sourceRHA	L-fucose as carbon sourceFUC	D-melezitose as carbon sourceMLZ	D-arabitol as carbon sourceDARL	L-arabitol as carbon sourceLARL	xylitol as carbon sourceXLT	dulcitol as carbon sourceDUL	D-tagatose as carbon sourceTAG	glycerol as carbon sourceGLY	myo-inositol as carbon sourceINO	D-mannitol as carbon sourceMAN	maltitol as carbon sourceMTL	D-turanose as carbon sourceTUR	D-sorbitol as carbon sourceSOR	adonitol as carbon sourceADO	hydroxyquinoline-beta-glucuronide as carbon sourceHBG	D-lyxose as carbon sourceLYX	i-erythritol as carbon sourceERY	1-O-methyl-alpha-D-glucoside as carbon sourceMDG	3-O-methyl-D-glucose as carbon source3MDG	D-saccharate as carbon sourceSAT	mucate as carbon sourceMUC	L-tartrate as carbon sourceLTAT	D-tartrate as carbon sourceDTAT	meso-tartrate as carbon sourceMTAT	D-malate as carbon sourceDMLT	L-malate as carbon sourceLMLT	cis-aconitate as carbon sourceCATE	trans-aconitate as carbon sourceTATE	tricarballylate as carbon sourceTTE	citrate as carbon sourceCIT	D-glucuronate as carbon sourceGRT	D-galacturonate as carbon sourceGAT	2-ketogluconate as carbon source2KG	5-ketogluconate as carbon source5KG	tryptophan as carbon sourceTRY	N-acetyl-D-glucosamine as carbon sourceNAG	D-gluconate as carbon sourceGNT	phenylacetate as carbon sourcePAC	protocatechuate as carbon sourcePAT	4-hydroxybenzoate as carbon sourcepOBE	quinate as carbon sourceQAT	gentisate as carbon sourceGTE	3-hydroxybenzoate as carbon sourcemOBE	benzoate as carbon sourceBAT	3-phenylpropionate as carbon sourcePPAT	m-coumarate as carbon sourceCMT	trigonelline as carbon sourceTGE	betaine as carbon sourceBET	putrescine as carbon sourcePCE	4-aminobutyrate as carbon sourceABT	histamine as carbon sourceHIN	DL-lactate as carbon sourceLAT	caprate as carbon sourceCAP	caprylate as carbon sourceCYT	L-histidine as carbon sourceHIS	succinate as carbon sourceSUC	fumarate as carbon sourceFUM	glutarate as carbon sourceGRE	DL-glycerate as carbon sourceGYT	5-aminovalerate as carbon sourceAVT	ethanolamine as carbon sourceETN	tryptamine as carbon sourceTTN	D-glucosamine as carbon sourceGLN	itaconate as carbon sourceITA	3-hydroxybutyrate as carbon source3OBU	L-aspartate as carbon sourceAPT	L-glutamate as carbon sourceGTT	L-proline as carbon sourcePRO	D-alanine as carbon sourceDALA	L-alanine as carbon sourceLALA	L-serine as carbon sourceSER	malonate as carbon sourceMNT	propionate as carbon sourcePROP	L-tyrosine as carbon sourceTYR	2-ketoglutarate as carbon source2KT
119420	not determinedn.d.	+	+	+	+	+	-	+	-	-	+	+	+	+	+	+	-	+	+	+	+	+	+	+	+	-	-	+	+	+	+	+	+	+	+	+	+	+	+	-	-	+	+	+	+	+	-	+	-	-	+	+	-	+	+	+	+	+	-	-	+	+	+	-	-	-	-	-	-	+	-	-	-	+	-	-	+	-	-	-	+	+	-	+	-	-	-	+	-	-	+	-	-	+	+	+	-	-	-	-

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Environmental	#Aquatic

Isolation

@ref	Sample type
1777	water
67770	Spring water
119420	Environment, Spring water

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
1777	1	Risk group (German classification) According to TRBA 466
119420	1	Risk group (French classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM100600v1 assembly for Serratia fonticola DSM 4576	complete	GCA_001006005	47917.8	2636415821	47917	98.65
67770	sf7882_v1 assembly for Serratia fonticola LMG 7882	contig	GCA_000469035	1378072.3	2602041585	1378072	4.84
67770	28771_D01 assembly for Serratia fonticola NCTC12965	contig	GCA_901482655	47917.36		47917

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Serratia fonticola 16S rRNA gene (strain DSM 4576)	AJ233429	1490	47917
20218	Serratia fonticola LMG 7882 16S ribosomal RNA gene, partial sequence	AF286869	1457	47917
20218	Serratia fonticola gene for 16S rRNA, partial sequence, strain: NBRC 102597	AB681874	1466	47917
124043	Serratia fonticola strain LMG 7882 16S ribosomal RNA gene, partial sequence.	OR053965	1432	47917
124043	Serratia fonticola strain NBRC 102597 16S ribosomal RNA gene, partial sequence.	PP858825	328	47917
1777	Serratia fonticola LMG 7882 serratia7882_scaffold293, whole genome shotgun sequence	AVAH01000293	1773	1378072

GC content

@ref	GC-content (mol%)	Method
67770	51.5	thermal denaturation, midpoint method (Tm)

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Serratia fonticola strain DSM 4576
PATRIC: 47917.8

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	94.50	no
125439	motility	BacteriaNetⓘ	yes	79.00	no
125439	gram_stain	BacteriaNetⓘ	negative	97.10	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	86.80	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Serratia fonticola DSM 4576
NCBI: GCA_001006005.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.00	no
125438	anaerobic	anaerobicⓘ	no	96.50	yes
125438	aerobic	aerobicⓘ	no	63.55	yes
125438	spore-forming	spore-formingⓘ	no	89.06	no
125438	thermophilic	thermophileⓘ	no	98.25	yes
125438	flagellated	motile2+ⓘ	yes	77.68	no

Literature

Topic	Title	Authors	Journal	DOI	Year
	Genome-driven discovery of new serrawettin W2 analogues from Serratia fonticola DSM 4576.	Qiu H, Xiao Y, Shen L, Han T, He Q, Li A, Zhang P, Cai X.	Org Biomol Chem	10.1039/d3ob01642k	2023
	Quorum sensing inhibition through site-directed mutation by deletion PCR.	Jeong Y, Moon S, Shin JH.	Biochem Biophys Res Commun	10.1016/j.bbrc.2023.03.078	2023
	Phylogeny and structural modeling of the transcription factor CsqR (YihW) from Escherichia coli.	Rybina AA, Glushak RA, Bessonova TA, Dakhnovets AI, Rudenko AY, Ozhiganov RM, Kaznadzey AD, Tutukina MN, Gelfand MS.	Sci Rep	10.1038/s41598-024-58492-y	2024
	Divergence among genes encoding the elongation factor Tu of Yersinia Species.	Isabel S, Leblanc E, Boissinot M, Boudreau DK, Grondin M, Picard FJ, Martel EA, Parham NJ, Chain PS, Bader DE, Mulvey MR, Bryden L, Roy PH, Ouellette M, Bergeron MG.	J Bacteriol	10.1128/jb.01067-08	2008
Enzymology	Development of rRNA-targeted PCR and in situ hybridization with fluorescently labelled oligonucleotides for detection of Yersinia species.	Trebesius K, Harmsen D, Rakin A, Schmelz J, Heesemann J.	J Clin Microbiol	10.1128/jcm.36.9.2557-2564.1998	1998
	The Glutaminase-Dependent Acid Resistance System: Qualitative and Quantitative Assays and Analysis of Its Distribution in Enteric Bacteria.	Pennacchietti E, D'Alonzo C, Freddi L, Occhialini A, De Biase D.	Front Microbiol	10.3389/fmicb.2018.02869	2018
Enzymology	Development of quantitative real-time PCR assays for detection and quantification of surrogate biological warfare agents in building debris and leachate.	Saikaly PE, Barlaz MA, de Los Reyes FL.	Appl Environ Microbiol	10.1128/aem.00779-07	2007
	A persistent and diverse airway microbiota present during chronic obstructive pulmonary disease exacerbations.	Huang YJ, Kim E, Cox MJ, Brodie EL, Brown R, Wiener-Kronish JP, Lynch SV.	OMICS	10.1089/omi.2009.0100	2010
Enzymology	Serratia fonticola isolated from a leg abscess.	Bollet C, Gainnier M, Sainty JM, Orhesser P, De Micco P.	J Clin Microbiol	10.1128/jcm.29.4.834-835.1991	1991
Enzymology	Molecular method for detection of total coliforms in drinking water samples.	Maheux AF, Boudreau DK, Bisson MA, Dion-Dupont V, Bouchard S, Nkuranga M, Bergeron MG, Rodriguez MJ.	Appl Environ Microbiol	10.1128/aem.00546-14	2014
Enzymology	Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples.	Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02337-10	2011
	Evaluation of hybridization characteristics of a cloned pRF106 probe for Listeria monocytogenes detection and development of a nonisotopic colony hybridization assay.	Kim CM, Graves LM, Swaminathan B, Mayer LW, Weaver RE.	Appl Environ Microbiol	10.1128/aem.57.1.289-294.1991	1991
	Compilation of small ribosomal subunit RNA structures.	Neefs JM, Van de Peer Y, De Rijk P, Chapelle S, De Wachter R.	Nucleic Acids Res	10.1093/nar/21.13.3025	1993
Enzymology	A robotic DNA purification protocol and real-time PCR for the detection of Enterobacter sakazakii in powdered infant formulae.	Derzelle S, Dilasser F.	BMC Microbiol	10.1186/1471-2180-6-100	2006
	Benchmarking the MinION: Evaluating long reads for microbial profiling.	Leidenfrost RM, Pother DC, Jackel U, Wunschiers R.	Sci Rep	10.1038/s41598-020-61989-x	2020
	Draft Genome Sequence of Serratia fonticola UTAD54, a Carbapenem-Resistant Strain Isolated from Drinking Water.	Henriques I, Juca Ramos RT, Barauna RA, de Sa PH, Marinho Almeida D, Carneiro AR, Barbosa S, Pereira A, Alves A, Saavedra MJ, Egas C, Silva A, Correia A.	Genome Announc	10.1128/genomea.00970-13	2013
Phylogeny	Information about variations in multiple copies of bacterial 16S rRNA genes may aid in species identification.	Ibal JC, Pham HQ, Park CE, Shin JH.	PLoS One	10.1371/journal.pone.0212090	2019
Metabolism	Complete genome sequence of Serratia fonticola DSM 4576 T, a potential plant growth promoting bacterium.	Lim YL, Yong D, Ee R, Krishnan T, Tee KK, Yin WF, Chan KG	J Biotechnol	10.1016/j.jbiotec.2015.09.005	2015
Phylogeny	Serratia glossinae Geiger et al. 2010 is a later synonym of Serratia fonticola Gavini et al. 1979.	Kampfer P, Glaeser SP	Int J Syst Evol Microbiol	10.1099/ijs.0.000112	2015
Genetics	Draft Genome Sequence of Serratia fonticola LMG 7882T Isolated from Freshwater.	Carneiro AR, Juca Ramos RT, Barauna RA, de Sa PH, Marinho Almeida D, Barbosa S, Pereira A, Alves A, Egas C, Correia A, Henriques I, Silva A	Genome Announc	10.1128/genomeA.00971-13	2013
	Serratia silvae sp. nov., Isolated from Forest Soil.	Cho GS, Muhle E, Clermont D, Franz CMAP, Besaury L.	Curr Microbiol	10.1007/s00284-023-03214-2	2023
Phylogeny	Serratia oryzae sp. nov., isolated from rice stems.	Zhang CW, Zhang J, Zhao JJ, Zhao X, Zhao DF, Yin HQ, Zhang XX	Int J Syst Evol Microbiol	10.1099/ijsem.0.002049	2017
Phylogeny	Serratia aquatilis sp. nov., isolated from drinking water systems.	Kampfer P, Glaeser SP	Int J Syst Evol Microbiol	10.1099/ijsem.0.000731	2015
Phylogeny	Serratia glossinae sp. nov., isolated from the midgut of the tsetse fly Glossina palpalis gambiensis.	Geiger A, Fardeau ML, Falsen E, Ollivier B, Cuny G	Int J Syst Evol Microbiol	10.1099/ijs.0.013441-0	2009

References

#1777	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4576
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#37710	; Curators of the CIP;
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67770	Japan Collection of Microorganism (JCM) ; Curators of the JCM;
#68368	Automatically annotated from API 20E .
#68371	Automatically annotated from API 50CH acid .
#68382	Automatically annotated from API zym .
#119420	Collection of Institut Pasteur ; Curators of the CIP; CIP 78.64
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Serratia fonticola (DSM 4576, ATCC 29844, CIP 78.64)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Culture medium

Culture temp

Physiology and metabolism

Oxygen tolerance

Spore formation

Compound production

Metabolite utilization

Antibiotic resistance

Metabolite production

Metabolite tests

Enzymes

API 20E

API zym

API 50CHac

API biotype100

Isolation, sampling and environmental information

Isolation source categories

Isolation

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Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_001006005

16S sequences

GC content

Genome-based predictions

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