Salmonella subterranea FRCl is an aerobe, Gram-negative, motile bacterium that was isolated from uranium contaminated subsurface sediment.
Gram-negative motile rod-shaped aerobe 16S sequence Bacteria| @ref 20215 |
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| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Salmonella |
| Species Salmonella subterranea |
| Full scientific name Salmonella subterranea Shelobolina et al. 2005 |
| Synonyms (2) |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 6326 | TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) | Medium recipe at MediaDive | Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water | ||
| 6326 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | Medium recipe at MediaDive | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water | ||
| 6326 | LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) | Medium recipe at MediaDive | Name: LB (Luria-Bertani) MEDIUM (DSMZ Medium 381) Composition: Agar 20.0 g/l NaCl 10.0 g/l Tryptone 10.0 g/l Yeast extract 5.0 g/l Distilled water | ||
| 38374 | MEDIUM 72- for trypto casein soja agar | Distilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g) | |||
| 123352 | CIP Medium 72 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68368 | 27613 ChEBI | amygdalin | + | fermentation | from API 20E |
| 68368 | 29016 ChEBI | arginine | - | hydrolysis | from API 20E |
| 68371 | 17057 ChEBI | cellobiose | + | builds acid from | from API 50CH acid |
| 68368 | 16947 ChEBI | citrate | - | assimilation | from API 20E |
| 68371 | 17108 ChEBI | D-arabinose | + | builds acid from | from API 50CH acid |
| 68371 | 18333 ChEBI | D-arabitol | + | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | - | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | + | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68371 | 24265 ChEBI | gluconate | + | builds acid from | from API 50CH acid |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68371 | 30849 ChEBI | L-arabinose | + | builds acid from | from API 50CH acid |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | + | builds acid from | from API 50CH acid |
| 68371 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API 50CH acid |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68368 | 25094 ChEBI | lysine | - | degradation | from API 20E |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | - | builds acid from | from API 50CH acid |
| 68368 | 28053 ChEBI | melibiose | - | fermentation | from API 20E |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 123352 | 17632 ChEBI | nitrate | + | reduction | |
| 123352 | 16301 ChEBI | nitrite | + | reduction | |
| 68368 | 18257 ChEBI | ornithine | + | degradation | from API 20E |
| 68371 | 0 ChEBI | Potassium 2-ketogluconate | + | builds acid from | from API 50CH acid |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 68368 | 30911 ChEBI | sorbitol | - | fermentation | from API 20E |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68368 | 17992 ChEBI | sucrose | - | fermentation | from API 20E |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68368 | 27897 ChEBI | tryptophan | + | energy source | from API 20E |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68382 | acid phosphatase | + | 3.1.3.2 | from API zym |
| 123352 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68382 | alkaline phosphatase | + | 3.1.3.1 | from API zym |
| 68382 | alpha-chymotrypsin | - | 3.4.21.1 | from API zym |
| 68382 | alpha-fucosidase | - | 3.2.1.51 | from API zym |
| 68382 | alpha-galactosidase | - | 3.2.1.22 | from API zym |
| 68382 | alpha-glucosidase | + | 3.2.1.20 | from API zym |
| 68382 | alpha-mannosidase | - | 3.2.1.24 | from API zym |
| 68368 | arginine dihydrolase | - | 3.5.3.6 | from API 20E |
| 68382 | beta-galactosidase | + | 3.2.1.23 | from API zym |
| 68368 | beta-galactosidase | + | 3.2.1.23 | from API 20E |
| 68382 | beta-glucosidase | + | 3.2.1.21 | from API zym |
| 68382 | beta-glucuronidase | - | 3.2.1.31 | from API zym |
| 123352 | catalase | + | 1.11.1.6 | |
| 68382 | cystine arylamidase | - | 3.4.11.3 | from API zym |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68382 | esterase (C 4) | - | from API zym | |
| 68382 | esterase lipase (C 8) | - | from API zym | |
| 68368 | gelatinase | - | from API 20E | |
| 68382 | leucine arylamidase | + | 3.4.11.1 | from API zym |
| 68382 | lipase (C 14) | - | from API zym | |
| 123352 | lysine decarboxylase | - | 4.1.1.18 | |
| 68368 | lysine decarboxylase | - | 4.1.1.18 | from API 20E |
| 68382 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API zym |
| 68382 | naphthol-AS-BI-phosphohydrolase | + | from API zym | |
| 123352 | ornithine decarboxylase | + | 4.1.1.17 | |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 | from API 20E |
| 123352 | oxidase | - | ||
| 68382 | trypsin | - | 3.4.21.4 | from API zym |
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 123352 | urease | - | 3.5.1.5 | |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| 68382 | valine arylamidase | - | from API zym |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 6326 | + | - | - | + | - | - | - | - | + | - | - | + | + | - | - | + | - | - | + | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 123352 | not determinedn.d. | +/- | - | + | + | + | + | - | - | - | + | + | + | + | - | + | +/- | - | + | - | - | - | + | - | +/- | - | - | + | + | - | - | - | + | - | - | - | - | - | - | +/- | - | +/- | - | - | + | + | - | + | + | - |
| @ref | Description | Assembly level | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|
| 66792 | Atlantibacter subterranea DSM 16208 | complete | 1123238 | 94.09 |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Modelling of Salmonella Enteritidis inactivation in liquid whole egg under dynamic manothermosonication treatments | Beitia E, Ebert E, Plank M, Chanos P, Hertel C, Bhonsale SS, Van Impe JFM, Heinz V, Aganovic K, Valdramidis V. | Innovative food science & emerging technologies : IFSET : the official scientific journal of the European Federation of Food Science and Technology. | 2024 | |||
| Validation List no. 221: valid publication of new names and new combinations effectively published outside the IJSEM. | Oren A, Goker M. | Int J Syst Evol Microbiol | 10.1099/ijsem.0.006562 | 2025 | ||
| Collateral sensitivity and cross-resistance in six species of bacteria exposed to six classes of antibiotics. | Wang X, Nong L, Schaar G, Koenders B, Jonker M, de Leeuw W, Ter Kuile BH. | Microbiol Spectr | 10.1128/spectrum.00983-25 | 2025 | ||
| Spray-Drying Microencapsulation of Artemisia herba-alba Phenolic Extract: Physicochemical Properties, Structural Characterization, and Bioactivity. | Lemmadi S, Dumas E, Adoui F, Agusti G, Vessot-Crastes S, Medfai W, Gharsallaoui A. | Molecules | 10.3390/molecules30193904 | 2025 | ||
| Pathogenicity | Characterization of a Diaporthe toxica Strain: Growth, Spore Formation, Phomopsin-A, and Alkaloids Production on Lupins. | Buccioni F, Rossi C, Serio A, Fanti F, Paparella A. | Toxins (Basel) | 10.3390/toxins16110481 | 2024 | |
| Phylogeny | Reclassification of Brevibacterium frigoritolerans DSM 8801T as Bacillus frigoritolerans comb. nov. Based on Genome Analysis. | Liu GH, Liu B, Wang JP, Che JM, Li PF. | Curr Microbiol | 10.1007/s00284-020-01964-x | 2020 | |
| Phage/nanoparticle cocktails for a biocompatible and environmentally friendly antibacterial therapy. | Wdowiak M, Raza S, Grotek M, Zbonikowski R, Nowakowska J, Doligalska M, Cai N, Luo Z, Paczesny J. | Appl Microbiol Biotechnol | 10.1007/s00253-025-13526-x | 2025 | ||
| Selenium nanoparticle loaded on PVA/chitosan biofilm synthesized from orange peels: antimicrobial and antioxidant properties for plum preservation. | Abdelaziz HTO, Seif Mohamed EM, Younis SKA, Ahmed N, Michaeel MN, Abu-Hussien SH, Bakry A, Ebeed NM, Nasser MA, El-Nasr MKA, Ali MAA, Hemdan B, Salah M, El-Sayed SM. | BMC Chem | 10.1186/s13065-025-01608-w | 2025 | ||
| Structural and regulatory determinants of flagellar motility in Rhodobacterales-the archetypal flagellum of Phaeobacter inhibens DSM 17395. | Tomasch J, Bartling P, Vollmers J, Wohlbrand L, Jarek M, Rohde M, Brinkmann H, Freese HM, Rabus R, Petersen J. | mSystems | 10.1128/msystems.00419-25 | 2025 | ||
| Microbiological efficacy in liquid egg products of a UV-C treatment in a coiled reactor | de Souza PM, Muller A, Fernandez A, Stahl M. | Innovative food science & emerging technologies : IFSET : the official scientific journal of the European Federation of Food Science and Technology. | 10.1016/j.ifset.2013.10.017 | 2014 | ||
| Environmental pH and compound structure affect the activity of short-chain carboxylic acids against planktonic growth, biofilm formation, and eradication of the food pathogen Salmonella enterica. | Ng K-S, Bambace MF, Andersen EB, Meyer RL, Schwab C. | Microbiol Spectr | 10.1128/spectrum.01658-24 | 2024 | ||
| Copper nanoparticles biosynthesis by Stevia rebaudiana extract: biocompatibility and antimicrobial application. | Abdelhai MF, Shabaan RH, Kamal NM, Elemary EA, Abd-Elhalim BT, Hassan EA. | AMB Express | 10.1186/s13568-024-01707-2 | 2024 | ||
| Differential gliding motility responses of Chryseobacterium sp. strain PMSZPI isolated from uranium ore deposit on hard and soft substrates. | Yermunja L, Acharya C. | Curr Res Microb Sci | 10.1016/j.crmicr.2024.100309 | 2024 | ||
| Carbohydrate deacetylase, a key enzyme in oxidative chitin degradation, is evolutionarily linked to amino acid deacetylase. | Wang JP, Zhao XM, Liu XL, Jiang WX, Gao C, Cao HY, Ding HT, Qin QL, Chen XL, Zhang YZ, Li PY. | J Biol Chem | 10.1016/j.jbc.2025.108420 | 2025 | ||
| Biosynthesis and characterization of silver nanoparticles from Punica granatum (pomegranate) peel waste and its application to inhibit foodborne pathogens. | Farouk SM, Abu-Hussien SH, Abd-Elhalim BT, Mohamed RM, Arabe NM, Hussain AAT, Mostafa ME, Hemdan B, El-Sayed SM, Bakry A, Ebeed NM, Salah M, Elhariry H, Galal A. | Sci Rep | 10.1038/s41598-023-46355-x | 2023 | ||
| Genetics | Comparative genomics and transcriptomics insight into myxobacterial metabolism potentials and multiple predatory strategies. | Wang C, Xiao Y, Wang Y, Liu Y, Yao Q, Zhu H. | Front Microbiol | 10.3389/fmicb.2023.1146523 | 2023 | |
| Identification of secondary metabolites containing a diketopiperazine core in extracts from myxobacterial strains with growth inhibition activity against a range of prey species. | Radford EJ, Whitworth DE, Allison G. | Access Microbiol | 10.1099/acmi.0.000629.v4 | 2023 | ||
| Utilization of biosynthesized silver nanoparticles from Agaricus bisporus extract for food safety application: synthesis, characterization, antimicrobial efficacy, and toxicological assessment. | Amr M, Abu-Hussien SH, Ismail R, Aboubakr A, Wael R, Yasser M, Hemdan B, El-Sayed SM, Bakry A, Ebeed NM, Elhariry H, Galal A, Abd-Elhalim BT. | Sci Rep | 10.1038/s41598-023-42103-3 | 2023 | ||
| Metabolism | Cloning, expression and characterization of a eukaryotic cycloalkanone monooxygenase from Cylindrocarpon radicicola ATCC 11011. | Leipold F, Wardenga R, Bornscheuer UT. | Appl Microbiol Biotechnol | 10.1007/s00253-011-3670-z | 2012 | |
| Deciphering the Biosynthesis and Physiological Function of 5-Methylated Pyrazinones Produced by Myxobacteria. | Zhu LL, Yang Q, Wang DG, Niu L, Pan Z, Li S, Li YZ, Zhang W, Wu C. | ACS Cent Sci | 10.1021/acscentsci.3c01363 | 2024 | ||
| Novel Biodegradable Nanoparticulate Chain-End Functionalized Polyhydroxybutyrate-Caffeic Acid with Multifunctionalities for Active Food Coatings. | Abdelmalek F, Rofeal M, Pietrasik J, Steinbuchel A. | ACS Sustain Chem Eng | 10.1021/acssuschemeng.3c00389 | 2023 | ||
| Characterization of endophytic bacteria isolated from root nodules of lentil in intercropping with durum wheat. | Brescia F, Sillo F, Balestrini R, Sbrana C, Zampieri E. | Curr Res Microb Sci | 10.1016/j.crmicr.2023.100205 | 2023 | ||
| Draft Genome Sequence of Mycobacterium vulneris DSM 45247T. | Croce O, Robert C, Raoult D, Drancourt M. | Genome Announc | 10.1128/genomea.00370-14 | 2014 | ||
| Metabolism | Chromosomal organization of biosynthetic gene clusters, including those of nine novel species, suggests plasticity of myxobacterial specialized metabolism. | Ahearne A, Phillips KE, Knehans T, Hoing M, Dowd SE, Stevens DC. | Front Microbiol | 10.3389/fmicb.2023.1227206 | 2023 | |
| Assessment of Evolutionary Relationships for Prioritization of Myxobacteria for Natural Product Discovery. | Ahearne A, Albataineh H, Dowd SE, Stevens DC. | Microorganisms | 10.3390/microorganisms9071376 | 2021 | ||
| Draft Genome Sequence of Rifamycin Derivatives Producing Amycolatopsis mediterranei Strain DSM 46096/S955. | Singh P, Kumari R, Mukherjee U, Saxena A, Sood U, Lal R. | Genome Announc | 10.1128/genomea.00837-14 | 2014 | ||
| Genetics | Comparative genomics of the plant-growth promoting bacterium Sphingobium sp. strain AEW4 isolated from the rhizosphere of the beachgrass Ammophila breviligulata. | Boss BL, Wanees AE, Zaslow SJ, Normile TG, Izquierdo JA. | BMC Genomics | 10.1186/s12864-022-08738-8 | 2022 | |
| Genetics | Characterization of Bifidobacterium asteroides Isolates. | Pino A, Benkaddour B, Inturri R, Amico P, Vaccaro SC, Russo N, Vaccalluzzo A, Agolino G, Caggia C, Miloud H, Randazzo CL. | Microorganisms | 10.3390/microorganisms10030655 | 2022 | |
| Optimization of Drug Permeation from 8% Ciclopirox Cyclodextrin/Poloxamer-Soluble Polypseudorotaxane-Based Nail Lacquers. | Cutrin-Gomez E, Conde-Penedo A, Anguiano-Igea S, Gomez-Amoza JL, Otero-Espinar FJ. | Pharmaceutics | 10.3390/pharmaceutics12030231 | 2020 | ||
| Phylogeny | Taxonomic characterization of members of the genus Corallococcus: molecular divergence versus phenotypic coherency. | Stackebrandt E, Pauker O, Steiner U, Schumann P, Straubler B, Heibei S, Lang E. | Syst Appl Microbiol | 10.1016/j.syapm.2006.03.002 | 2007 | |
| The Antimicrobial Effect of Various Single-Strain and Multi-Strain Probiotics, Dietary Supplements or Other Beneficial Microbes against Common Clinical Wound Pathogens. | Fijan S, Kocbek P, Steyer A, Vodicar PM, Strauss M. | Microorganisms | 10.3390/microorganisms10122518 | 2022 | ||
| New Biocalcifying Marine Bacterial Strains Isolated from Calcareous Deposits and Immediate Surroundings. | Vincent J, Colin B, Lanneluc I, Sabot R, Sopena V, Turcry P, Mahieux PY, Refait P, Jeannin M, Sable S. | Microorganisms | 10.3390/microorganisms10010076 | 2021 | ||
| Biochemical purification and characterization of a truncated acidic, thermostable chitinase from marine fungus for N-acetylglucosamine production. | He B, Yang L, Yang D, Jiang M, Ling C, Chen H, Ji F, Pan L. | Front Bioeng Biotechnol | 10.3389/fbioe.2022.1013313 | 2022 | ||
| Metabolic Profile of Einkorn, Spelt, Emmer Ancient Wheat Species Sourdough Fermented with Strain of Lactiplantibacillus plantarum ATCC 8014. | Serban LR, Paucean A, Chis MS, Pop CR, Man SM, Puscas A, Ranga F, Socaci SA, Alexa E, Berbecea A, Semeniuc CA, Muresan V. | Foods | 10.3390/foods12051096 | 2023 | ||
| Metabolism | Pluraflavins, potent antitumor antibiotics from Saccharothrix sp. DSM 12931. | Vertesy L, Barbone FP, Cashmen E, Decker H, Ehrlich K, Jordan B, Knauf M, Schummer D, Segeth MP, Wink J, Seibert G. | J Antibiot (Tokyo) | 10.7164/antibiotics.54.718 | 2001 | |
| Enzymology | Detection of vaginal lactobacilli as probiotic candidates. | Pino A, Bartolo E, Caggia C, Cianci A, Randazzo CL. | Sci Rep | 10.1038/s41598-019-40304-3 | 2019 | |
| Antimicrobial activity of resveratrol-derived monomers and dimers against foodborne pathogens. | Mattio LM, Dallavalle S, Musso L, Filardi R, Franzetti L, Pellegrino L, D'Incecco P, Mora D, Pinto A, Arioli S. | Sci Rep | 10.1038/s41598-019-55975-1 | 2019 | ||
| The alpha-amylase gene amyH of the moderate halophile Halomonas meridiana: cloning and molecular characterization. | Coronado MA, Vargas C, Mellado E, Tegos G, Drainas C, Nieto JNJ, Ventosa A. | Microbiology (Reading) | 10.1099/00221287-146-4-861 | 2000 | ||
| A Novel Antimicrobial Metabolite Produced by Paenibacillus apiarius Isolated from Brackish Water of Lake Balkhash in Kazakhstan. | Meene A, Herzer C, Schluter R, Zayadan B, Pukall R, Schumann P, Schauer F, Urich T, Mikolasch A. | Microorganisms | 10.3390/microorganisms10081519 | 2022 | ||
| Enzymology | Degradation of the low-calorie sugar substitute 5-ketofructose by different bacteria. | Schiessl J, Kosciow K, Garschagen LS, Hoffmann JJ, Heymuth J, Franke T, Deppenmeier U. | Appl Microbiol Biotechnol | 10.1007/s00253-021-11168-3 | 2021 | |
| Inhibitory Effect of Lactococcin BZ Against Listeria innocua and Indigenous Microbiota of Fresh Beef. | Yildirim Z, Yerlikaya S, Oncul N, Sakin T. | Food Technol Biotechnol | 10.17113/ftb.54.03.16.4373 | 2016 | ||
| Genetics | Marine Sponge and Octocoral-Associated Bacteria Show Versatile Secondary Metabolite Biosynthesis Potential and Antimicrobial Activities against Human Pathogens. | Almeida JF, Marques M, Oliveira V, Egas C, Mil-Homens D, Viana R, Cleary DFR, Huang YM, Fialho AM, Teixeira MC, Gomes NCM, Costa R, Keller-Costa T. | Mar Drugs | 10.3390/md21010034 | 2022 | |
| Genetics | The Genome Analysis of the Human Lung-Associated Streptomyces sp. TR1341 Revealed the Presence of Beneficial Genes for Opportunistic Colonization of Human Tissues. | Lara AC, Corretto E, Kotrbova L, Lorenc F, Petrickova K, Grabic R, Chronakova A. | Microorganisms | 10.3390/microorganisms9081547 | 2021 | |
| Piacentinu Ennese PDO Cheese as Reservoir of Promising Probiotic Bacteria. | Pino A, Russo N, Van Hoorde K, De Angelis M, Sferrazzo G, Randazzo CL, Caggia C. | Microorganisms | 10.3390/microorganisms7080254 | 2019 | ||
| Variability in survival of Pectinatus cerevisiiphilus, strictly anaerobic bacteria, under different oxygen conditions. | Chowdhury I, Watier D, Hornez JP. | Anaerobe | 10.1006/anae.1995.1012 | 1995 | ||
| A phylogenetic and proteomic reconstruction of eukaryotic chromatin evolution. | Grau-Bove X, Navarrete C, Chiva C, Pribasnig T, Anto M, Torruella G, Galindo LJ, Lang BF, Moreira D, Lopez-Garcia P, Ruiz-Trillo I, Schleper C, Sabido E, Sebe-Pedros A. | Nat Ecol Evol | 10.1038/s41559-022-01771-6 | 2022 | ||
| Metabolism | Phosphate effect on filipin production and morphological differentiation in Streptomyces filipinensis and the role of the PhoP transcription factor. | Barreales EG, Payero TD, de Pedro A, Aparicio JF. | PLoS One | 10.1371/journal.pone.0208278 | 2018 | |
| Selection for Reducing Energy Cost of Protein Production Drives the GC Content and Amino Acid Composition Bias in Gene Transfer Agents. | Kogay R, Wolf YI, Koonin EV, Zhaxybayeva O. | mBio | 10.1128/mbio.01206-20 | 2020 | ||
| Engineering bacterial microcompartments with heterologous enzyme cargos. | Wagner HJ, Capitain CC, Richter K, Nessling M, Mampel J. | Eng Life Sci | 10.1002/elsc.201600107 | 2017 | ||
| Horizontal operon transfer, plasmids, and the evolution of photosynthesis in Rhodobacteraceae. | Brinkmann H, Goker M, Koblizek M, Wagner-Dobler I, Petersen J. | ISME J | 10.1038/s41396-018-0150-9 | 2018 | ||
| Metabolism | Essentiality of the Maltase AmlE in Maltose Utilization and Its Transcriptional Regulation by the Repressor AmlR in the Acarbose-Producing Bacterium Actinoplanes sp. SE50/110. | Schaffert L, Schneiker-Bekel S, Dymek S, Droste J, Persicke M, Busche T, Brandt D, Puhler A, Kalinowski J. | Front Microbiol | 10.3389/fmicb.2019.02448 | 2019 | |
| Functional analysis of filipin tailoring genes from Streptomyces filipinensis reveals alternative routes in filipin III biosynthesis and yields bioactive derivatives. | Payero TD, Vicente CM, Rumbero A, Barreales EG, Santos-Aberturas J, de Pedro A, Aparicio JF. | Microb Cell Fact | 10.1186/s12934-015-0307-4 | 2015 | ||
| Enzymology | Detection, distribution, and organohalogen compound discovery implications of the reduced flavin adenine dinucleotide-dependent halogenase gene in major filamentous actinomycete taxonomic groups. | Gao P, Huang Y. | Appl Environ Microbiol | 10.1128/aem.02958-08 | 2009 | |
| Metabolism | Indoleacrylic Acid Produced by Commensal Peptostreptococcus Species Suppresses Inflammation. | Wlodarska M, Luo C, Kolde R, d'Hennezel E, Annand JW, Heim CE, Krastel P, Schmitt EK, Omar AS, Creasey EA, Garner AL, Mohammadi S, O'Connell DJ, Abubucker S, Arthur TD, Franzosa EA, Huttenhower C, Murphy LO, Haiser HJ, Vlamakis H, Porter JA, Xavier RJ. | Cell Host Microbe | 10.1016/j.chom.2017.06.007 | 2017 | |
| Biotechnology | Microbial diagnostic microarray for food- and water-borne pathogens. | Kostic T, Stessl B, Wagner M, Sessitsch A, Bodrossy L. | Microb Biotechnol | 10.1111/j.1751-7915.2010.00176.x | 2010 | |
| Description of Flavobacterium cyclinae sp. nov. and Flavobacterium channae sp. nov., isolated from the intestines of Cyclina sinensis (Corb shell) and Channa argus (Northern snakehead). | Kang S, Lee JY, Han JE, Jeong YS, Gim DH, Bae JW. | J Microbiol | 10.1007/s12275-022-2075-2 | 2022 | ||
| Spirosoma profusum sp. nov., and Spirosoma validum sp. nov., radiation-resistant bacteria isolated from soil in South Korea. | Park Y, Maeng S, Damdintogtokh T, Zhang J, Kim MK, Srinivasan S, Kim MK. | Antonie Van Leeuwenhoek | 10.1007/s10482-021-01585-9 | 2021 | ||
| Phylogeny | Flavobacterium turcicum sp. nov. and Flavobacterium kayseriense sp. nov. isolated from farmed rainbow trout in Turkey. | Saticioglu IB, Ay H, Altun S, Duman M, Sahin N. | Syst Appl Microbiol | 10.1016/j.syapm.2021.126186 | 2021 | |
| Metabolism | Flavobacterium humi sp. nov., a flexirubin-type pigment producing bacterium, isolated from soil. | Kim I, Kim J, Chhetri G, Seo T. | J Microbiol | 10.1007/s12275-019-9350-x | 2019 | |
| Phylogeny | Paenibacillus aquistagni sp. nov., isolated from an artificial lake accumulating industrial wastewater. | Simon L, Skraban J, Kyrpides NC, Woyke T, Shapiro N, Cleenwerck I, Vandamme P, Whitman WB, Trcek J. | Antonie Van Leeuwenhoek | 10.1007/s10482-017-0891-x | 2017 | |
| Isolation of highly copper-resistant bacteria from deep-sea hydrothermal fields and description of a novel species Marinobacter metalliresistant sp. nov. | Yu T, Qin M, Shao Z, Zhao Y, Zeng X. | Front Microbiol | 10.3389/fmicb.2024.1390451 | 2024 | ||
| Safety evaluation of Akkermansia massiliensis sp. nov. DSM 33459. | Pitt J, Bauter MR, Kumar R, Hasselwander O, Hibberd AA, Kane H, Wang Q, Auzanneau I, Bry S, David E, Seguinot P, Burns F, Smith AB. | Toxicol Rep | 10.1016/j.toxrep.2025.102042 | 2025 | ||
| Enzymology | Arthrobacter ginsengisoli sp. nov., isolated from soil of a ginseng field. | Siddiqi MZ, Kim YJ, Hoang VA, Siddiqi MH, Huq MA, Yang DC. | Arch Microbiol | 10.1007/s00203-014-1025-8 | 2014 | |
| Phylogeny | Halomonas huangheensis sp. nov., a moderately halophilic bacterium isolated from a saline-alkali soil. | Miao C, Jia F, Wan Y, Zhang W, Lin M, Jin W. | Int J Syst Evol Microbiol | 10.1099/ijs.0.056556-0 | 2014 | |
| Phylogeny | Aggregicoccus edonensis gen. nov., sp. nov., an unusually aggregating myxobacterium isolated from a soil sample. | Sood S, Awal RP, Wink J, Mohr KI, Rohde M, Stadler M, Kampfer P, Glaeser SP, Schumann P, Garcia R, Muller R. | Int J Syst Evol Microbiol | 10.1099/ijs.0.061176-0 | 2015 | |
| Phylogeny | Flavobacterium aquaticum sp. nov., isolated from a water sample of a rice field. | Subhash Y, Sasikala C, Ramana CV. | Int J Syst Evol Microbiol | 10.1099/ijs.0.050047-0 | 2013 | |
| Phylogeny | Sphingobium limneticum sp. nov. and Sphingobium boeckii sp. nov., two freshwater planktonic members of the family Sphingomonadaceae, and reclassification of Sphingomonas suberifaciens as Sphingobium suberifaciens comb. nov. | Chen H, Jogler M, Rohde M, Klenk HP, Busse HJ, Tindall BJ, Sproer C, Overmann J. | Int J Syst Evol Microbiol | 10.1099/ijs.0.040105-0 | 2013 | |
| Phylogeny | Halomonas boliviensis sp. nov., an alkalitolerant, moderate halophile isolated from soil around a Bolivian hypersaline lake. | Quillaguaman J, Hatti-Kaul R, Mattiasson B, Alvarez MT, Delgado O. | Int J Syst Evol Microbiol | 10.1099/ijs.0.02800-0 | 2004 | |
| Taxonomic and Enzymatic Characterization of Flocculibacter collagenilyticus gen. nov., sp. nov., a Novel Gammaproteobacterium With High Collagenase Production. | Li J, Cheng JH, Teng ZJ, Sun ZZ, He XY, Wang P, Shi M, Song XY, Chen XL, Zhang YZ, Tian X, Zhang XY. | Front Microbiol | 10.3389/fmicb.2021.621161 | 2021 | ||
| Phylogeny | Isolation, characterization, and U(VI)-reducing potential of a facultatively anaerobic, acid-resistant Bacterium from Low-pH, nitrate- and U(VI)-contaminated subsurface sediment and description of Salmonella subterranea sp. nov. | Shelobolina ES, Sullivan SA, O'Neill KR, Nevin KP, Lovley DR. | Appl Environ Microbiol | 10.1128/aem.70.5.2959-2965.2004 | 2004 |
| #6326 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 16208 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20216 | Curators of the JMRC: Jena Microbial Resource Collection (JMRC): |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #38374 | ; Curators of the CIP; |
| #60616 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 55500 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #68368 | Automatically annotated from API 20E . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68382 | Automatically annotated from API zym . |
| #123352 | Collection of Institut Pasteur ; Curators of the CIP; CIP 109002 |
| #124043 | Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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