Strain identifier

BacDive ID: 5126

Type strain: Yes

Species: Salmonella subterranea

Strain Designation: FRCl

Culture col. no.: CCUG 55500, DSM 16208, ATCC BAA 836, CIP 109002

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General

@ref: 6326

BacDive-ID: 5126

DSM-Number: 16208

keywords: aerobe, Bacteria, 16S sequence, genome sequence, mesophilic

description: Salmonella subterranea FRCl is an aerobe, mesophilic bacterium that was isolated from uranium contaminated subsurface sediment.

strain history: <- E. S. Shelobolina, Uni Massachusetts; FRCl

doi: 10.13145/bacdive5126.20201210.5

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/proteobacteria
  • domain: Bacteria
  • phylum: Proteobacteria
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella subterranea
  • full scientific name: Salmonella subterranea Shelobolina et al. 2005
  • synonyms

    • @ref: 20215
    • synonym: Atlantibacter subterranea

@ref: 6326

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella subterranea

full scientific name: Salmonella subterranea Shelobolina et al. 2005

strain designation: FRCl

type strain: yes

Morphology

colony morphology

  • @ref: 60616
  • incubation period: 1 day

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
6326CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium220.pdf
6326LB (Luria-Bertani) MEDIUM (DSMZ Medium 381)yeshttps://www.dsmz.de/microorganisms/medium/pdf/DSMZ_Medium381.pdf
38374MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)

culture temp

@refgrowthtypetemperaturerange
6326positivegrowth30mesophilic
38374positivegrowth25mesophilic
60616positivegrowth25mesophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 60616
  • oxygen tolerance: aerobe

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
6326+--+----+--++--+--++-

Isolation, sampling and environmental information

isolation

@refsample typegeographic locationcountryorigin.countrycontinent
6326uranium contaminated subsurface sedimentTNUSAUSANorth America
60616Uranium contaminated subsurface sedimentUSAUSANorth America

isolation source categories

Cat1Cat2Cat3
#Engineered#Contamination
#Environmental#Aquatic#Sediment

Safety information

risk assessment

  • @ref: 6326
  • biosafety level: 1
  • biosafety level comment: Risk group (German classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Salmonella subterranea strain FRCI 16S ribosomal RNA gene, partial sequence
  • accession: AY373829
  • length: 1363
  • database: ena
  • NCBI tax ID: 255519

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Atlantibacter subterranea ZYL01GCA_007570865contigncbi255519
66792Atlantibacter subterranea AS_379GCA_003939305contigncbi255519
66792Atlantibacter subterranea AS_373GCA_003940265contigncbi255519
66792Atlantibacter subterranea AS_383GCA_003938425scaffoldncbi255519
66792Atlantibacter subterranea strain AS_373255519.5wgspatric255519
66792Atlantibacter subterranea strain AS_379255519.4wgspatric255519
66792Atlantibacter subterranea strain AS_383255519.3wgspatric255519
66792Atlantibacter subterranea strain ZYL01255519.9wgspatric255519
66792Atlantibacter subterranea DSM 162082574180435permanentimg1123238

External links

@ref: 6326

culture collection no.: CCUG 55500, DSM 16208, ATCC BAA 836, CIP 109002

straininfo link

@refpassport
20218http://www.straininfo.net/strains/386561
20218http://www.straininfo.net/strains/386560
20218http://www.straininfo.net/strains/691162

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
6326Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 16208)https://www.dsmz.de/collection/catalogue/details/culture/DSM-16208
20215D.Gleim, M.Kracht, N.Weiss et. al.http://www.dsmz.de/bacterial-diversity/prokaryotic-nomenclature-up-to-date.htmlProkaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
38374Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/6696
60616Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 55500)https://www.ccug.se/strain?id=55500
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)