Salmonella bongori (DSM 13772, ATCC 43975, CIP 82.33)

Name: Salmonella bongori (DSM 13772, ATCC 43975, CIP 82.33)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5125

Type strain

Strain Designation 1224.72

Culture col. no. DSM 13772 ATCC 43975 CIP 82.33 CCUG 30042 1224.72 1 more

NCBI tax ID(s) 218493 54736

Special Collections DSMZ CCUG CIP

History <- Collection des Bactéries de l' Institut Pasteur; CIP 82.33 <- L. LeMinor, Institut Pasteur, Paris, France; 1224.72 1982, L. Le Minor, Inst. Pasteur, Paris, France: strain 1224.72, Salmonella choleraesuissubsp. bongori CIP <- 1982, L. Le Minor, Inst. Pasteur, Paris, France: strain 1224.72, Salmonella choleraesuis subsp. bongori

Links

Salmonella bongori 1224.72 is an aerobe, Gram-negative, motile bacterium that was isolated from human.

Gram-negative motile rod-shaped aerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 42158

ATCC 43975,CCUG 30042,DSM 13772,CIP 82.33,CIP 8233,NCTC 12419,KCTC 12397

@ref 20215

Last LPSN update 2026-02-09 11:18:53

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Enterobacteriaceae

Genus Salmonella

Species Salmonella bongori

Full scientific name Salmonella bongori (Le Minor et al. 1985) Reeves et al. 1989

Synonyms (2)

Salmonella enterica subsp. bongori
Salmonella choleraesuis subsp. bongori

BacDive ID	Other strains from **Salmonella bongori** (1)	Type strain
156617	S. bongori CCUG 63587

Morphology

Cell morphology

@ref	Gram stain	Cell shape	Motility
119041	negative	rod-shaped

Culture and growth conditions

Culture medium

@ref	Name	Medium link	Composition
5159	COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)	Medium recipe at MediaDive	Name: COLUMBIA BLOOD MEDIUM (DSMZ Medium 693) Composition: Defibrinated sheep blood 50.0 g/l Columbia agar base
5159	TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)	Medium recipe at MediaDive	Name: TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Yeast extract 3.0 g/l Distilled water
39822	MEDIUM 3 - Columbia agar		Columbia agar (39.000 g);distilled water (1000.000 ml)
119041	CIP Medium 72	Medium recipe at CIP
119041	CIP Medium 3	Medium recipe at CIP

Culture temp

@ref	Growth	Type	Temperature (°C)
5159	positive	growth	30
39822	positive	growth	30
49872	positive	growth	30

Physiology and metabolism

Oxygen tolerance

49872

Oxygen toleranceaerobe

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
68368	27613 ChEBI	amygdalin	-	fermentation	from API 20E
68368	29016 ChEBI	arginine	+	hydrolysis	from API 20E
68368	16947 ChEBI	citrate	+	assimilation	from API 20E
68368	17634 ChEBI	D-glucose	+	fermentation	from API 20E
68368	16899 ChEBI	D-mannitol	+	fermentation	from API 20E
68368	5291 ChEBI	gelatin	-	hydrolysis	from API 20E
68368	30849 ChEBI	L-arabinose	+	fermentation	from API 20E
68368	62345 ChEBI	L-rhamnose	+	fermentation	from API 20E
68368	25094 ChEBI	lysine	+	degradation	from API 20E
68368	28053 ChEBI	melibiose	+	fermentation	from API 20E
68368	17268 ChEBI	myo-inositol	-	fermentation	from API 20E
68368	18257 ChEBI	ornithine	+	degradation	from API 20E
68368	30911 ChEBI	sorbitol	+	fermentation	from API 20E
68368	17992 ChEBI	sucrose	-	fermentation	from API 20E
68368	27897 ChEBI	tryptophan	-	energy source	from API 20E
68368	16199 ChEBI	urea	-	hydrolysis	from API 20E

Metabolite production

@ref	Chebi-ID	Metabolite
68368	15688 ChEBI	acetoin	from API 20E
68368	16136 ChEBI	hydrogen sulfide	from API 20E
68368	35581 ChEBI	indole	from API 20E

Metabolite tests

@ref	Chebi-ID	Metabolite	Voges-proskauer-test	Indole test
68368	15688 ChEBI	acetoin	-		from API 20E
68368	35581 ChEBI	indole		-	from API 20E

Enzymes

@ref	Value	Activity	Ec
68368	arginine dihydrolase	+	3.5.3.6	from API 20E
68368	beta-galactosidase	+	3.2.1.23	from API 20E
68368	cytochrome oxidase	-	1.9.3.1	from API 20E
68368	gelatinase	-		from API 20E
68368	lysine decarboxylase	+	4.1.1.18	from API 20E
68368	ornithine decarboxylase	+	4.1.1.17	from API 20E
68368	tryptophan deaminase	-	4.1.99.1	from API 20E
68368	urease	-	3.5.1.5	from API 20E

Pathway annotation

Computationally determined by

@ref	pathway	enzyme coverage	annotated reactions
66794	cellulose degradation	100	5 of 5
66794	methylglyoxal degradation	100	5 of 5
66794	reductive acetyl coenzyme A pathway	100	7 of 7
66794	ethanol fermentation	100	2 of 2
66794	sulfoquinovose degradation	100	3 of 3
66794	Entner Doudoroff pathway	100	10 of 10
66794	cis-vaccenate biosynthesis	100	2 of 2
66794	threonine metabolism	100	10 of 10
66794	ppGpp biosynthesis	100	4 of 4
66794	enterobactin biosynthesis	100	3 of 3
66794	glycogen metabolism	100	5 of 5
66794	L-lactaldehyde degradation	100	3 of 3
66794	acetate fermentation	100	4 of 4
66794	lipoate biosynthesis	100	5 of 5
66794	gluconeogenesis	100	8 of 8
66794	vitamin K metabolism	100	5 of 5
66794	biotin biosynthesis	100	4 of 4
66794	palmitate biosynthesis	100	22 of 22
66794	tetrahydrofolate metabolism	100	14 of 14
66794	folate polyglutamylation	100	1 of 1
66794	anapleurotic synthesis of oxalacetate	100	1 of 1
66794	suberin monomers biosynthesis	100	2 of 2
66794	UDP-GlcNAc biosynthesis	100	3 of 3
66794	CDP-diacylglycerol biosynthesis	100	2 of 2
66794	starch degradation	100	10 of 10
66794	coenzyme A metabolism	100	4 of 4
66794	ubiquinone biosynthesis	100	7 of 7
66794	formaldehyde oxidation	100	3 of 3
66794	adipate degradation	100	2 of 2
66794	photosynthesis	92.86	13 of 14
66794	citric acid cycle	92.86	13 of 14
66794	glutathione metabolism	92.86	13 of 14
66794	vitamin B6 metabolism	90.91	10 of 11
66794	metabolism of disaccharids	90.91	10 of 11
66794	4-hydroxyphenylacetate degradation	90	9 of 10
66794	lipid A biosynthesis	88.89	8 of 9
66794	NAD metabolism	88.89	16 of 18
66794	d-mannose degradation	88.89	8 of 9
66794	chorismate metabolism	88.89	8 of 9
66794	molybdenum cofactor biosynthesis	88.89	8 of 9
66794	valine metabolism	88.89	8 of 9
66794	C4 and CAM-carbon fixation	87.5	7 of 8
66794	isoleucine metabolism	87.5	7 of 8
66794	degradation of sugar alcohols	87.5	14 of 16
66794	ketogluconate metabolism	87.5	7 of 8
66794	heme metabolism	85.71	12 of 14
66794	propanol degradation	85.71	6 of 7
66794	phenylalanine metabolism	84.62	11 of 13
66794	vitamin B1 metabolism	84.62	11 of 13
66794	alanine metabolism	82.76	24 of 29
66794	pyrimidine metabolism	82.22	37 of 45
66794	pentose phosphate pathway	81.82	9 of 11
66794	propionate fermentation	80	8 of 10
66794	peptidoglycan biosynthesis	80	12 of 15
66794	metabolism of amino sugars and derivatives	80	4 of 5
66794	purine metabolism	78.72	74 of 94
66794	glutamate and glutamine metabolism	78.57	22 of 28
66794	CO2 fixation in Crenarchaeota	77.78	7 of 9
66794	aspartate and asparagine metabolism	77.78	7 of 9
66794	serine metabolism	77.78	7 of 9
66794	sulfate reduction	76.92	10 of 13
66794	6-hydroxymethyl-dihydropterin diphosphate biosynthesis	75	6 of 8
66794	CMP-KDO biosynthesis	75	3 of 4
66794	glycogen biosynthesis	75	3 of 4
66794	butanoate fermentation	75	3 of 4
66794	lactate fermentation	75	3 of 4
66794	sulfopterin metabolism	75	3 of 4
66794	flavin biosynthesis	73.33	11 of 15
66794	proline metabolism	72.73	8 of 11
66794	degradation of pentoses	71.43	20 of 28
66794	cardiolipin biosynthesis	71.43	5 of 7
66794	lipid metabolism	70.97	22 of 31
66794	leucine metabolism	69.23	9 of 13
66794	methionine metabolism	69.23	18 of 26
66794	non-pathway related	68.42	26 of 38
66794	selenocysteine biosynthesis	66.67	4 of 6
66794	cyanate degradation	66.67	2 of 3
66794	cysteine metabolism	66.67	12 of 18
66794	acetoin degradation	66.67	2 of 3
66794	octane oxidation	66.67	2 of 3
66794	oxidative phosphorylation	65.93	60 of 91
66794	histidine metabolism	65.52	19 of 29
66794	glycolysis	64.71	11 of 17
66794	degradation of sugar acids	64	16 of 25
66794	d-xylose degradation	63.64	7 of 11
66794	arginine metabolism	62.5	15 of 24
66794	urea cycle	61.54	8 of 13
66794	isoprenoid biosynthesis	61.54	16 of 26
66794	degradation of hexoses	61.11	11 of 18
66794	tryptophan metabolism	60.53	23 of 38
66794	phenol degradation	60	12 of 20
66794	gallate degradation	60	3 of 5
66794	3-phenylpropionate degradation	60	9 of 15
66794	hydrogen production	60	3 of 5
66794	degradation of aromatic, nitrogen containing compounds	58.33	7 of 12
66794	tyrosine metabolism	57.14	8 of 14
66794	lysine metabolism	57.14	24 of 42
66794	nitrate assimilation	55.56	5 of 9
66794	quinate degradation	50	1 of 2
66794	pantothenate biosynthesis	50	3 of 6
66794	ascorbate metabolism	50	11 of 22
66794	phenylmercury acetate degradation	50	1 of 2
66794	toluene degradation	50	2 of 4
66794	mannosylglycerate biosynthesis	50	1 of 2
66794	glycolate and glyoxylate degradation	50	3 of 6
66794	carnitine metabolism	50	4 of 8
66794	arachidonate biosynthesis	40	2 of 5
66794	phenylacetate degradation (aerobic)	40	2 of 5
66794	glycine metabolism	40	4 of 10
66794	O-antigen biosynthesis	40	2 of 5
66794	ethylmalonyl-CoA pathway	40	2 of 5
66794	arachidonic acid metabolism	38.89	7 of 18
66794	phenylpropanoid biosynthesis	38.46	5 of 13
66794	androgen and estrogen metabolism	37.5	6 of 16
66794	dTDPLrhamnose biosynthesis	37.5	3 of 8
66794	polyamine pathway	34.78	8 of 23
66794	acetyl CoA biosynthesis	33.33	1 of 3
66794	IAA biosynthesis	33.33	1 of 3
66794	sphingosine metabolism	33.33	2 of 6
66794	1,4-dihydroxy-6-naphthoate biosynthesis	33.33	2 of 6
66794	allantoin degradation	33.33	3 of 9
66794	(5R)-carbapenem carboxylate biosynthesis	33.33	1 of 3
66794	myo-inositol biosynthesis	30	3 of 10
66794	coenzyme M biosynthesis	30	3 of 10
66794	bile acid biosynthesis, neutral pathway	29.41	5 of 17
66794	vitamin E metabolism	25	1 of 4
66794	cyclohexanol degradation	25	1 of 4
66794	phosphatidylethanolamine bioynthesis	23.08	3 of 13
66794	daunorubicin biosynthesis	22.22	2 of 9
66794	vitamin B12 metabolism	20.59	7 of 34

Fatty acid profile

Metadata FA analysis

@ref

49872

Fatty acid	Percentage	ECL
C16:0	24	16
C16:1 ω7c	18.8	15.819
C18:1 ω7c /12t/9t	18.3	17.824
C17:0 CYCLO	11.2	16.888
C14:0	10	14
C14:0 3OH/C16:1 ISO I	8.9	15.485
C12:0	3.7	12
C15:0	1.8	15
C14:0 2OH	0.9	15.205
C19:0 CYCLO ω8c	0.8	18.9
unknown 14.503	0.7	14.503
C17:0	0.5	17
C13:0	0.4	13

API 20E

@ref	ONPG	ADH (Arg)	LDC (Lys)	ODC	CIT	H2S productionH2S	URE	TDA (Trp)	IND	Acetoin production (Voges Proskauer test)VP	GEL	GLU	MAN	INO	Sor	RHA	SAC	MEL	AMY	ARA	OX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	OF-O	OF-F
5159	+	+	+	+	+	+	-	-	-	-	-	+	+	-	+	+	-	+	-	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2
#Host	#Human

Isolation

@ref	Sample type	Country	Country ISO 3 Code	Continent
5159	human	USA	USA	North America

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
5159	2	Risk group (German classification) According to TRBA 466
119041	2	Risk group (French classification) According to TRBA 466

Phages

@ref	Name	Strain number
124042	Salmonella phage vB_SboM-PT-JD22	DSM 13772

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
124043	ASM25299v1 assembly for Salmonella bongori NCTC 12419	complete	GCA_000252995	218493.5	650716084	218493	97.83
124043	29751_D01 assembly for Salmonella bongori NCTC12419	complete	GCA_900635485	54736.17		54736	24.61

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Salmonella bongori strain BR 1859 16S ribosomal RNA gene, partial sequence	AF029227	1498	54736
20218	Salmonella bongori strain DSM 13772 16S ribosomal RNA gene, partial sequence	EU014682	1443	54736
20218	Salmonella bongori strain DSM 13772 16S ribosomal RNA gene, partial sequence	HQ012016	936	54736
124043	Salmonella bongori strain DSM 13772 16S ribosomal RNA gene, partial sequence.	OQ915459	1443	54736
124043	Salmonella bongori strain NCTC 12419 16S ribosomal RNA gene, partial sequence.	OQ916416	1491	54736
124043	Salmonella bongori strain NCTC 12419 16S ribosomal RNA gene, partial sequence.	OQ916428	1491	54736

Genome-based predictions

Literature

Topic	Title	Authors	Journal	DOI	Year
	Waste Citrus limon Leaves as Source of Essential Oil Rich in Limonene and Citral: Chemical Characterization, Antimicrobial and Antioxidant Properties, and Effects on Cancer Cell Viability.	Petretto GL, Vacca G, Addis R, Pintore G, Nieddu M, Piras F, Sogos V, Fancello F, Zara S, Rosa A.	Antioxidants (Basel)	10.3390/antiox12061238	2023
Genetics	An evaluation of the species and subspecies of the genus Salmonella with whole genome sequence data: Proposal of type strains and epithets for novel S. enterica subspecies VII, VIII, IX, X and XI.	Pearce ME, Langridge GC, Lauer AC, Grant K, Maiden MCJ, Chattaway MA.	Genomics	10.1016/j.ygeno.2021.07.003	2021
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	Bioprospecting of culturable marine biofilm bacteria for novel antimicrobial peptides.	Fan S, Qin P, Lu J, Wang S, Zhang J, Wang Y, Cheng A, Cao Y, Ding W, Zhang W.	Imeta	10.1002/imt2.244	2024
	Probiotic potential of bacteria associated with the mangrove epiphytic algae Bostrychia calliptera and Rhizoclonium riparium	Martinez-Delgado J, Benitez-Campo N.	PeerJ		2025
	Performance of a new molecular assay for the detection of gastrointestinal pathogens.	Gingras BA, Maggiore JA.	Access Microbiol	10.1099/acmi.0.000160	2020
Genetics	Real-Time PCR Method for the Rapid Detection and Quantification of Pathogenic Staphylococcus Species Based on Novel Molecular Target Genes.	Kim E, Yang SM, Won JE, Kim DY, Kim DS, Kim HY.	Foods	10.3390/foods10112839	2021
Metabolism	Transfer and analysis of Salmonella pdu genes in a range of Gram-negative bacteria demonstrate exogenous microcompartment expression across a variety of species.	Graf L, Wu K, Wilson JW.	Microb Biotechnol	10.1111/1751-7915.12863	2018
Phylogeny	TetR-family transcription factors in Gram-negative bacteria: conservation, variation and implications for efflux-mediated antimicrobial resistance.	Colclough AL, Scadden J, Blair JMA.	BMC Genomics	10.1186/s12864-019-6075-5	2019
Metabolism	lac repressor is an antivirulence factor of Salmonella enterica: its role in the evolution of virulence in Salmonella.	Eswarappa SM, Karnam G, Nagarajan AG, Chakraborty S, Chakravortty D.	PLoS One	10.1371/journal.pone.0005789	2009
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Phylogeny	Comparison of Salmonella enterica serovar Typhimurium LT2 and non-LT2 salmonella genomic sequences, and genotyping of salmonellae by using PCR.	Kim HJ, Park SH, Kim HY.	Appl Environ Microbiol	10.1128/aem.00138-06	2006
Enzymology	Real-Time PCR Method for Detection of Salmonella spp. in Environmental Samples.	Kasturi KN, Drgon T.	Appl Environ Microbiol	10.1128/aem.00644-17	2017
	Single nucleotide polymorphisms that differentiate two subpopulations of Salmonella enteritidis within phage type.	Guard J, Morales CA, Fedorka-Cray P, Gast RK.	BMC Res Notes	10.1186/1756-0500-4-369	2011
	Development and evaluation of oligonucleotide chip based on the 16S-23S rRNA gene spacer region for detection of pathogenic microorganisms associated with sepsis.	Kim CM, Song ES, Jang HJ, Kim HJ, Lee S, Shin JH, Kim SJ, Jeong SH, Jeong J, Koh K, Choi GE, Lee EY, Chang CL.	J Clin Microbiol	10.1128/jcm.01130-09	2010
Enzymology	Three-hour molecular detection of Campylobacter, Salmonella, Yersinia, and Shigella species in feces with accuracy as high as that of culture.	Cunningham SA, Sloan LM, Nyre LM, Vetter EA, Mandrekar J, Patel R.	J Clin Microbiol	10.1128/jcm.00339-10	2010
	Diversification of the Salmonella fimbriae: a model of macro- and microevolution.	Yue M, Rankin SC, Blanchet RT, Nulton JD, Edwards RA, Schifferli DM.	PLoS One	10.1371/journal.pone.0038596	2012
Enzymology	Molecular method for detection of total coliforms in drinking water samples.	Maheux AF, Boudreau DK, Bisson MA, Dion-Dupont V, Bouchard S, Nkuranga M, Bergeron MG, Rodriguez MJ.	Appl Environ Microbiol	10.1128/aem.00546-14	2014
Enzymology	Multiplex detection of nine food-borne pathogens by mPCR and capillary electrophoresis after using a universal pre-enrichment medium.	Villamizar-Rodriguez G, Fernandez J, Marin L, Muniz J, Gonzalez I, Lombo F.	Front Microbiol	10.3389/fmicb.2015.01194	2015
Enzymology	Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples.	Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG.	Appl Environ Microbiol	10.1128/aem.02337-10	2011
Phylogeny	Evolutionary diversification of an ancient gene family (rhs) through C-terminal displacement.	Jackson AP, Thomas GH, Parkhill J, Thomson NR.	BMC Genomics	10.1186/1471-2164-10-584	2009
Metabolism	Lack of genomic evidence of AI-2 receptors suggests a non-quorum sensing role for luxS in most bacteria.	Rezzonico F, Duffy B.	BMC Microbiol	10.1186/1471-2180-8-154	2008
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	The Uropathogenic Specific Protein Gene usp from Escherichia coli and Salmonella bongori is a Novel Member of the TyrR and H-NS Regulons.	Rihtar E, Zgur Bertok D, Podlesek Z.	Microorganisms	10.3390/microorganisms8030330	2020
Genetics	Towards decentralization of Salmonella serotyping and risk assessment in poultry production environments with nanopore sequencing.	Karunarathna R, Liu CC, Periyasamy D, Berg A, Ngeleka M, Trokhymchuk A.	Front Microbiol	10.3389/fmicb.2025.1669089	2025
Proteome	Estimating relative biomasses of organisms in microbiota using "phylopeptidomics".	Pible O, Allain F, Jouffret V, Culotta K, Miotello G, Armengaud J.	Microbiome	10.1186/s40168-020-00797-x	2020
Phylogeny	Diversity, Distribution and Structural Prediction of the Pathogenic Bacterial Effectors EspN and EspS.	Li Z, Hu Y, Song Y, Li D, Yang X, Zhang L, Li T, Wang H.	Genes (Basel)	10.3390/genes15101250	2024
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Proteome	Mix24X, a Lab-Assembled Reference to Evaluate Interpretation Procedures for Tandem Mass Spectrometry Proteotyping of Complex Samples.	Mappa C, Alpha-Bazin B, Pible O, Armengaud J.	Int J Mol Sci	10.3390/ijms24108634	2023
	Characterization and resistance mechanism of phage-resistant strains of Salmonella enteritidis.	Zeng Y, Shen M, Liu S, Zhou X.	Poult Sci	10.1016/j.psj.2024.103756	2024
Enzymology	Identification of a Family of Vibrio Type III Secretion System Effectors That Contain a Conserved Serine/Threonine Kinase Domain.	Plaza N, Urrutia IM, Garcia K, Waldor MK, Blondel CJ.	mSphere	10.1128/msphere.00599-21	2021
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	Anaerobiosis favors biosynthesis of single and multi-element nanostructures.	Rios-Silva M, Perez M, Luraschi R, Vargas E, Silva-Andrade C, Valdes J, Sandoval JM, Vasquez C, Arenas F.	PLoS One	10.1371/journal.pone.0273392	2022
Genetics	Salmonella Pathogenicity Island 1 (SPI-1): The Evolution and Stabilization of a Core Genomic Type Three Secretion System.	Lerminiaux NA, MacKenzie KD, Cameron ADS.	Microorganisms	10.3390/microorganisms8040576	2020
	Next generation sequencing data of a defined microbial mock community.	Singer E, Andreopoulos B, Bowers RM, Lee J, Deshpande S, Chiniquy J, Ciobanu D, Klenk HP, Zane M, Daum C, Clum A, Cheng JF, Copeland A, Woyke T.	Sci Data	10.1038/sdata.2016.81	2016
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Metabolism	Therapeutic Potential of Metabolites from Lactobacillus rhamnosus and Mare's Milk in the Treatment of Dysbiosis.	Kozhakhmetov S, Babenko D, Kozhakhmetova S, Tuyakova A, Nurgaziyev M, Nurgozhina A, Muhanbetganov N, Chulenbayeva L, Sergazy S, Gulyayev A, Aljofan M, Kushugulova A.	Biomed Res Int	10.1155/2022/3851478	2022
Metabolism	The ancestral stringent response potentiator, DksA has been adapted throughout Salmonella evolution to orchestrate the expression of metabolic, motility, and virulence pathways.	Cohen H, Adani B, Cohen E, Piscon B, Azriel S, Desai P, Bahre H, McClelland M, Rahav G, Gal-Mor O.	Gut Microbes	10.1080/19490976.2021.1997294	2022
	Characterization and comparative analysis of the Escherichia marmotae M-12 isolate from bank vole (Myodes glareolus).	Zhurilov PA, Andriyanov PA, Tutrina AI, Razheva IV, Liskova EA, Gladkova NA, Kashina DD, Yashin IV, Blokhin AA.	Sci Rep	10.1038/s41598-023-41223-0	2023
Genetics	Unravelling the antibiotic and heavy metal resistome of a chronically polluted soil.	Salam LB.	3 Biotech	10.1007/s13205-020-02219-z	2020
	Bacterial esterases reverse lipopolysaccharide ubiquitylation to block host immunity.	Szczesna M, Huang Y, Lacoursiere RE, Bonini F, Pol V, Koc F, Ward B, Geurink PP, Pruneda JN, Thurston TLM.	Cell Host Microbe	10.1016/j.chom.2024.04.012	2024
Pathogenicity	Bacterial effectors mediate kinase reprogramming through mimicry of conserved eukaryotic motifs.	Panagi I, Muench JH, Ronneau A, Diaz-Del-Olmo I, Aliyath A, Yu XJ, Mak H, Jin E, Zeng J, Esposito D, Jennings E, Pillay TD, Gunster RA, Maslen SL, Rittinger K, Thurston TLM.	EMBO Rep	10.1038/s44319-025-00472-y	2025
Genetics	Comparative Genome Analysis of Hungarian and Global Strains of Salmonella Infantis.	Nagy T, Szmolka A, Wilk T, Kiss J, Szabo M, Paszti J, Nagy B, Olasz F.	Front Microbiol	10.3389/fmicb.2020.00539	2020
	Evaluation of Antimicrobial Potential and Comparison of HPLC Composition, Secondary Metabolites Count, and Antioxidant Activity of Mentha rotundifolia and Mentha pulegium Extracts.	Alharbi NK, Naghmouchi S, Al-Zaban M.	Evid Based Complement Alternat Med	10.1155/2021/9081536	2021
Metabolism	Systems Biology and Pangenome of Salmonella O-Antigens.	Seif Y, Monk JM, Machado H, Kavvas E, Palsson BO.	mBio	10.1128/mbio.01247-19	2019
Genetics	Biochemical and Genomic Characterization of Two New Strains of Lacticaseibacillus paracasei Isolated from the Traditional Corn-Based Beverage of South Africa, Mahewu, and Their Comparison with Strains Isolated from Kefir Grains.	Moiseenko KV, Begunova AV, Savinova OS, Glazunova OA, Rozhkova IV, Fedorova TV.	Foods	10.3390/foods12010223	2023
	Rosemary Extract and Essential Oil as Drink Ingredients: An Evaluation of Their Chemical Composition, Genotoxicity, Antimicrobial, Antiviral, and Antioxidant Properties.	Christopoulou SD, Androutsopoulou C, Hahalis P, Kotsalou C, Vantarakis A, Lamari FN.	Foods	10.3390/foods10123143	2021
	Antimicrobial Effects of Egyptian Local Chicory, Cichorium endivia subsp. pumilum.	Amer AM.	Int J Microbiol	10.1155/2018/6475072	2018
	Accurate binning of metagenomic contigs via automated clustering sequences using information of genomic signatures and marker genes.	Lin HH, Liao YC.	Sci Rep	10.1038/srep24175	2016
	Antibacterial T6SS effectors with a VRR-Nuc domain are structure-specific nucleases.	Hespanhol JT, Sanchez-Limache DE, Nicastro GG, Mead L, Llontop EE, Chagas-Santos G, Farah CS, de Souza RF, Galhardo RDS, Lovering AL, Bayer-Santos E.	Elife	10.7554/elife.82437	2022
	Evolution and Sequence Diversity of FhuA in Salmonella and Escherichia.	Wang Y, Chen X, Hu Y, Zhu G, White AP, Koster W.	Infect Immun	10.1128/iai.00573-18	2018
	Venatorbacter cucullus gen. nov sp. nov a novel bacterial predator.	Saeedi A, Cummings NJ, McLean D, Connerton IF, Connerton PL.	Sci Rep	10.1038/s41598-021-00865-8	2021
Genetics	Reagent and laboratory contamination can critically impact sequence-based microbiome analyses.	Salter SJ, Cox MJ, Turek EM, Calus ST, Cookson WO, Moffatt MF, Turner P, Parkhill J, Loman NJ, Walker AW.	BMC Biol	10.1186/s12915-014-0087-z	2014
Pathogenicity	Ciprofloxacin at low levels disrupts colonization resistance of human fecal microflora growing in chemostats.	Carman RJ, Simon MA, Fernandez H, Miller MA, Bartholomew MJ.	Regul Toxicol Pharmacol	10.1016/j.yrtph.2004.08.005	2004
	Exposure to stressors and antimicrobials induces cell-autonomous ultrastructural heterogeneity of an intracellular bacterial pathogen.	Schulte M, Hensel M, Miskiewicz K.	Front Cell Infect Microbiol	10.3389/fcimb.2022.963354	2022
Phylogeny	The Type III Secretion System Effector SeoC of Salmonella enterica subsp. salamae and S. enterica subsp. arizonae ADP-Ribosylates Src and Inhibits Opsonophagocytosis.	Pollard DJ, Young JC, Covarelli V, Herrera-Leon S, Connor TR, Fookes M, Walker D, Echeita A, Thomson NR, Berger CN, Frankel G.	Infect Immun	10.1128/iai.00704-16	2016
	The Health-Benefits and Phytochemical Profile of Salvia apiana and Salvia farinacea var. Victoria Blue Decoctions.	Afonso AF, Pereira OR, Pereira OR, Fernandes ASF, Calhelha RC, Silva AMS, Ferreira ICFR, Cardoso SM.	Antioxidants (Basel)	10.3390/antiox8080241	2019
Metabolism	Salmonella enterica Requires Lipid Metabolism Genes To Replicate in Proinflammatory Macrophages and Mice.	Reens AL, Nagy TA, Detweiler CS.	Infect Immun	10.1128/iai.00776-19	2019
Phylogeny	Phylogenomic analysis identifies gene gains that define Salmonella enterica subspecies I.	Lienau EK, Blazar JM, Wang C, Brown EW, Stones R, Musser S, Allard MW.	PLoS One	10.1371/journal.pone.0076821	2013
	Salmonella bongori provides insights into the evolution of the Salmonellae.	Fookes M, Schroeder GN, Langridge GC, Blondel CJ, Mammina C, Connor TR, Seth-Smith H, Vernikos GS, Robinson KS, Sanders M, Petty NK, Kingsley RA, Baumler AJ, Nuccio SP, Contreras I, Santiviago CA, Maskell D, Barrow P, Humphrey T, Nastasi A, Roberts M, Frankel G, Parkhill J, Dougan G, Thomson NR.	PLoS Pathog	10.1371/journal.ppat.1002191	2011
Metabolism	An RpoS-dependent sRNA regulates the expression of a chaperone involved in protein folding.	Silva IJ, Ortega AD, Viegas SC, Garcia-Del Portillo F, Arraiano CM.	RNA	10.1261/rna.039537.113	2013
	Structure, diversity, and mobility of the Salmonella pathogenicity island 7 family of integrative and conjugative elements within Enterobacteriaceae.	Seth-Smith HM, Fookes MC, Okoro CK, Baker S, Harris SR, Scott P, Pickard D, Quail MA, Churcher C, Sanders M, Harmse J, Dougan G, Parkhill J, Thomson NR.	J Bacteriol	10.1128/jb.06403-11	2012
Pathogenicity	Viable-but-Nonculturable Listeria monocytogenes and Salmonella enterica Serovar Thompson Induced by Chlorine Stress Remain Infectious.	Highmore CJ, Warner JC, Rothwell SD, Wilks SA, Keevil CW.	mBio	10.1128/mbio.00540-18	2018
	Transcription of the Campylobacter jejuni cell division gene ftsA.	Griffiths PL, Dougan G, Connerton IF.	FEMS Microbiol Lett	10.1016/0378-1097(96)00295-9	1996
Genetics	Protein domain architectures provide a fast, efficient and scalable alternative to sequence-based methods for comparative functional genomics.	Koehorst JJ, Saccenti E, Schaap PJ, Martins Dos Santos VAP, Suarez-Diez M.	F1000Res	10.12688/f1000research.9416.3	2016
Enzymology	Human placenta has no microbiome but can contain potential pathogens.	de Goffau MC, Lager S, Sovio U, Gaccioli F, Cook E, Peacock SJ, Parkhill J, Charnock-Jones DS, Smith GCS.	Nature	10.1038/s41586-019-1451-5	2019
Metabolism	A small RNA activates CFA synthase by isoform-specific mRNA stabilization.	Frohlich KS, Papenfort K, Fekete A, Vogel J.	EMBO J	10.1038/emboj.2013.222	2013
	Evolutionary switches between two serine codon sets are driven by selection.	Rogozin IB, Belinky F, Pavlenko V, Shabalina SA, Kristensen DM, Koonin EV.	Proc Natl Acad Sci U S A	10.1073/pnas.1615832113	2016
	Detection, identification and quantification of Campylobacter jejuni, coli and lari in food matrices all at once using multiplex qPCR.	Vondrakova L, Pazlarova J, Demnerova K.	Gut Pathog	10.1186/1757-4749-6-12	2014
Metabolism	DsbL and DsbI contribute to periplasmic disulfide bond formation in Salmonella enterica serovar Typhimurium.	Lin D, Kim B, Slauch JM.	Microbiology (Reading)	10.1099/mic.0.032904-0	2009
Phylogeny	Rare Events of Intragenus and Intraspecies Horizontal Transfer of the 16S rRNA Gene.	Tian RM, Cai L, Zhang WP, Cao HL, Qian PY.	Genome Biol Evol	10.1093/gbe/evv143	2015
Phylogeny	CTAG-containing cleavage site profiling to delineate Salmonella into natural clusters.	Tang L, Liu WQ, Fang X, Sun Q, Zhu SL, Wang CX, Wang XY, Li YG, Zhu DL, Sanderson KE, Johnston RN, Liu GR, Liu SL.	PLoS One	10.1371/journal.pone.0103388	2014
Metabolism	Acylation of the Type 3 Secretion System Translocon Using a Dedicated Acyl Carrier Protein.	Viala JP, Prima V, Puppo R, Agrebi R, Canestrari MJ, Lignon S, Chauvin N, Meresse S, Mignot T, Lebrun R, Bouveret E.	PLoS Genet	10.1371/journal.pgen.1006556	2017
Enzymology	Occurrence, diversity, and host association of intestinal Campylobacter, Arcobacter, and Helicobacter in reptiles.	Gilbert MJ, Kik M, Timmerman AJ, Severs TT, Kusters JG, Duim B, Wagenaar JA.	PLoS One	10.1371/journal.pone.0101599	2014
	A Genomic Island in Salmonella enterica ssp. salamae provides new insights on the genealogy of the locus of enterocyte effacement.	Chandry PS, Gladman S, Moore SC, Seemann T, Crandall KA, Fegan N.	PLoS One	10.1371/journal.pone.0041615	2012
Metabolism	Targeted activation of diverse CRISPR-Cas systems for mammalian genome editing via proximal CRISPR targeting.	Chen F, Ding X, Feng Y, Seebeck T, Jiang Y, Davis GD.	Nat Commun	10.1038/ncomms14958	2017
	LPS structure and PhoQ activity are important for Salmonella Typhimurium virulence in the Galleria mellonella infection model [corrected].	Bender JK, Wille T, Blank K, Lange A, Gerlach RG.	PLoS One	10.1371/journal.pone.0073287	2013
Enzymology	Evaluation of a simple blood culture amplification and antigen detection method for diagnosis of Salmonella enterica serovar typhi bacteremia.	Castonguay-Vanier J, Davong V, Bouthasavong L, Sengdetka D, Simmalavong M, Seupsavith A, Dance DA, Baker S, Le Thi Phuong T, Vongsouvath M, Newton PN.	J Clin Microbiol	10.1128/jcm.02360-12	2013
	A sequential statistical approach towards an optimized production of a broad spectrum bacteriocin substance from a soil bacterium Bacillus sp. YAS 1 strain.	Embaby AM, Heshmat Y, Hussein A, Marey HS.	ScientificWorldJournal	10.1155/2014/396304	2014
Biotechnology	Development of a real-time multiplex PCR assay for the detection of multiple Salmonella serotypes in chicken samples.	O'Regan E, McCabe E, Burgess C, McGuinness S, Barry T, Duffy G, Whyte P, Fanning S.	BMC Microbiol	10.1186/1471-2180-8-156	2008
Metabolism	Divergent roles of Salmonella pathogenicity island 2 and metabolic traits during interaction of S. enterica serovar typhimurium with host cells.	Holzer SU, Hensel M.	PLoS One	10.1371/journal.pone.0033220	2012
	Division of the Salmonella-containing vacuole and depletion of acidic lysosomes in Salmonella-infected host cells are novel strategies of Salmonella enterica to avoid lysosomes.	Eswarappa SM, Negi VD, Chakraborty S, Chandrasekhar Sagar BK, Chakravortty D.	Infect Immun	10.1128/iai.00668-09	2010
Enzymology	Biofilm formation and adherence characteristics of an Elizabethkingia meningoseptica isolate from Oreochromis mossambicus.	Jacobs A, Chenia HY.	Ann Clin Microbiol Antimicrob	10.1186/1476-0711-10-16	2011
Metabolism	Attenuated Salmonella Typhimurium lacking the pathogenicity island-2 type 3 secretion system grow to high bacterial numbers inside phagocytes in mice.	Grant AJ, Morgan FJ, McKinley TJ, Foster GL, Maskell DJ, Mastroeni P.	PLoS Pathog	10.1371/journal.ppat.1003070	2012
Enzymology	Evidence of metabolic switching and implications for food safety from the phenome(s) of Salmonella enterica serovar Typhimurium DT104 cultured at selected points across the pork production food chain.	Martins M, McCusker MP, McCabe EM, O'Leary D, Duffy G, Fanning S.	Appl Environ Microbiol	10.1128/aem.01041-13	2013
Metabolism	Promoter strength driving TetR determines the regulatory properties of Tet-controlled expression systems.	Georgi C, Buerger J, Hillen W, Berens C.	PLoS One	10.1371/journal.pone.0041620	2012
	Implication of lateral genetic transfer in the emergence of Aeromonas hydrophila isolates of epidemic outbreaks in channel catfish.	Hossain MJ, Waldbieser GC, Sun D, Capps NK, Hemstreet WB, Carlisle K, Griffin MJ, Khoo L, Goodwin AE, Sonstegard TS, Schroeder S, Hayden K, Newton JC, Terhune JS, Liles MR.	PLoS One	10.1371/journal.pone.0080943	2013
Metabolism	SpiC is required for translocation of Salmonella pathogenicity island 2 effectors and secretion of translocon proteins SseB and SseC.	Freeman JA, Rappl C, Kuhle V, Hensel M, Miller SI.	J Bacteriol	10.1128/jb.184.18.4971-4980.2002	2002
Metabolism	Disruption of glycolytic flux is a signal for inflammasome signaling and pyroptotic cell death.	Sanman LE, Qian Y, Eisele NA, Ng TM, van der Linden WA, Monack DM, Weerapana E, Bogyo M.	Elife	10.7554/elife.13663	2016
Phylogeny	Primers specific for the fimbrial major subunit gene stdA can be used to detect Salmonella enterica serovars.	Chuang YC, Yang CH, Lin JH, Wang KC, Cheng CP, Yeh KS	J Food Prot	10.4315/0362-028x-71.6.1108	2008
	Polyphasic Characterisation of Cedecea colo sp. nov., a New Enteric Bacterium Isolated from the Koala Hindgut.	Boath JM, Dakhal S, Van TTH, Moore RJ, Dekiwadia C, Macreadie IG.	Microorganisms	10.3390/microorganisms8020309	2020

References

#5159	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 13772
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#39822	; Curators of the CIP;
#49872	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30042
#66794	Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 )
#68368	Automatically annotated from API 20E .
#119041	Collection of Institut Pasteur ; Curators of the CIP; CIP 82.33
#124042	Johannes Wittmann, Clara Rolland, Lorenz Reimer, Joaquim Sardà: PhageDive .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Salmonella bongori (DSM 13772, ATCC 43975, CIP 82.33)

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API 20E

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