Salmonella enterica subsp. houtenae 264-66 is a facultative anaerobe, Gram-negative, motile bacterium of the family Enterobacteriaceae.
Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Enterobacteriaceae |
| Genus Salmonella |
| Species Salmonella enterica subsp. houtenae |
| Full scientific name Salmonella enterica subsp. houtenae (Le Minor et al. 1985 ex Le Minor et al. 1970) Le Minor and Popoff 1987 |
| Synonyms (2) |
| BacDive ID | Other strains from Salmonella enterica subsp. houtenae (6) | Type strain |
|---|---|---|
| 146109 | S. enterica subsp. houtenae CCUG 30393 | |
| 146110 | S. enterica subsp. houtenae CCUG 30394 | |
| 146111 | S. enterica subsp. houtenae CCUG 30395 | |
| 146112 | S. enterica subsp. houtenae CCUG 30396 | |
| 146113 | S. enterica subsp. houtenae CCUG 30397 | |
| 146127 | S. enterica subsp. houtenae CCUG 30415 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 3518 | CASO AGAR (MERCK 105458) (DSMZ Medium 220) | Medium recipe at MediaDive | Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water | ||
| 40233 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 119040 | CIP Medium 3 | Medium recipe at CIP |
| 119040 | Oxygen tolerancefacultative anaerobe |
| @ref | Spore formation | Confidence | |
|---|---|---|---|
| 125439 | 95.437 |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68371 | 27613 ChEBI | amygdalin | - | builds acid from | from API 50CH acid |
| 68368 | 27613 ChEBI | amygdalin | - | fermentation | from API 20E |
| 68371 | 18305 ChEBI | arbutin | - | builds acid from | from API 50CH acid |
| 68374 | 29016 ChEBI | arginine | + | hydrolysis | from API ID32E |
| 68368 | 29016 ChEBI | arginine | + | hydrolysis | from API 20E |
| 68374 | 17057 ChEBI | cellobiose | - | builds acid from | from API ID32E |
| 68371 | 17057 ChEBI | cellobiose | - | builds acid from | from API 50CH acid |
| 119040 | 16947 ChEBI | citrate | + | carbon source | |
| 68368 | 16947 ChEBI | citrate | + | assimilation | from API 20E |
| 68374 | 18333 ChEBI | D-arabitol | - | builds acid from | from API ID32E |
| 68371 | 18333 ChEBI | D-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 15824 ChEBI | D-fructose | + | builds acid from | from API 50CH acid |
| 68371 | 28847 ChEBI | D-fucose | - | builds acid from | from API 50CH acid |
| 68371 | 12936 ChEBI | D-galactose | + | builds acid from | from API 50CH acid |
| 68374 | 18024 ChEBI | D-galacturonic acid | - | builds acid from | from API ID32E |
| 68374 | 17634 ChEBI | D-glucose | + | builds acid from | from API ID32E |
| 68371 | 17634 ChEBI | D-glucose | + | builds acid from | from API 50CH acid |
| 68368 | 17634 ChEBI | D-glucose | + | fermentation | from API 20E |
| 68371 | 62318 ChEBI | D-lyxose | - | builds acid from | from API 50CH acid |
| 68374 | 16899 ChEBI | D-mannitol | + | builds acid from | from API ID32E |
| 68371 | 16899 ChEBI | D-mannitol | + | builds acid from | from API 50CH acid |
| 68368 | 16899 ChEBI | D-mannitol | + | fermentation | from API 20E |
| 68371 | 16024 ChEBI | D-mannose | + | builds acid from | from API 50CH acid |
| 68371 | 16988 ChEBI | D-ribose | + | builds acid from | from API 50CH acid |
| 68371 | 17924 ChEBI | D-sorbitol | + | builds acid from | from API 50CH acid |
| 68371 | 16443 ChEBI | D-tagatose | - | builds acid from | from API 50CH acid |
| 68371 | 65327 ChEBI | D-xylose | + | builds acid from | from API 50CH acid |
| 68371 | 17113 ChEBI | erythritol | - | builds acid from | from API 50CH acid |
| 68371 | 4853 ChEBI | esculin | - | builds acid from | from API 50CH acid |
| 68371 | 16813 ChEBI | galactitol | - | builds acid from | from API 50CH acid |
| 68368 | 5291 ChEBI | gelatin | - | hydrolysis | from API 20E |
| 68371 | 28066 ChEBI | gentiobiose | - | builds acid from | from API 50CH acid |
| 68371 | 24265 ChEBI | gluconate | + | builds acid from | from API 50CH acid |
| 119040 | 17234 ChEBI | glucose | + | degradation | |
| 68371 | 28087 ChEBI | glycogen | - | builds acid from | from API 50CH acid |
| 68371 | 15443 ChEBI | inulin | - | builds acid from | from API 50CH acid |
| 68374 | 30849 ChEBI | L-arabinose | + | builds acid from | from API ID32E |
| 68371 | 30849 ChEBI | L-arabinose | + | builds acid from | from API 50CH acid |
| 68368 | 30849 ChEBI | L-arabinose | + | fermentation | from API 20E |
| 68374 | 18403 ChEBI | L-arabitol | - | builds acid from | from API ID32E |
| 68371 | 18403 ChEBI | L-arabitol | - | builds acid from | from API 50CH acid |
| 68371 | 18287 ChEBI | L-fucose | + | builds acid from | from API 50CH acid |
| 68374 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API ID32E |
| 68371 | 62345 ChEBI | L-rhamnose | + | builds acid from | from API 50CH acid |
| 68368 | 62345 ChEBI | L-rhamnose | + | fermentation | from API 20E |
| 68371 | 17266 ChEBI | L-sorbose | - | builds acid from | from API 50CH acid |
| 68371 | 65328 ChEBI | L-xylose | - | builds acid from | from API 50CH acid |
| 68371 | 17716 ChEBI | lactose | - | builds acid from | from API 50CH acid |
| 68374 | 25094 ChEBI | lysine | + | degradation | from API ID32E |
| 68368 | 25094 ChEBI | lysine | + | degradation | from API 20E |
| 119040 | 15792 ChEBI | malonate | - | assimilation | |
| 68374 | 15792 ChEBI | malonate | - | assimilation | from API ID32E |
| 68371 | 17306 ChEBI | maltose | + | builds acid from | from API 50CH acid |
| 68374 | 17306 ChEBI | maltose | + | builds acid from | from API ID32E |
| 68371 | 6731 ChEBI | melezitose | - | builds acid from | from API 50CH acid |
| 68371 | 28053 ChEBI | melibiose | + | builds acid from | from API 50CH acid |
| 68368 | 28053 ChEBI | melibiose | + | fermentation | from API 20E |
| 68371 | 320061 ChEBI | methyl alpha-D-glucopyranoside | - | builds acid from | from API 50CH acid |
| 68371 | 43943 ChEBI | methyl alpha-D-mannoside | - | builds acid from | from API 50CH acid |
| 68371 | 74863 ChEBI | methyl beta-D-xylopyranoside | - | builds acid from | from API 50CH acid |
| 68374 | 17268 ChEBI | myo-inositol | - | builds acid from | from API ID32E |
| 68371 | 17268 ChEBI | myo-inositol | - | builds acid from | from API 50CH acid |
| 68368 | 17268 ChEBI | myo-inositol | - | fermentation | from API 20E |
| 68371 | 59640 ChEBI | N-acetylglucosamine | + | builds acid from | from API 50CH acid |
| 119040 | 17632 ChEBI | nitrate | + | reduction | |
| 119040 | 16301 ChEBI | nitrite | + | reduction | |
| 68374 | 18257 ChEBI | ornithine | + | degradation | from API ID32E |
| 68368 | 18257 ChEBI | ornithine | + | degradation | from API 20E |
| 68374 | 18394 ChEBI | palatinose | - | builds acid from | from API ID32E |
| 68371 | 0 ChEBI | Potassium 2-ketogluconate | - | builds acid from | from API 50CH acid |
| 68371 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API 50CH acid |
| 68374 | 0 ChEBI | Potassium 5-ketogluconate | - | builds acid from | from API ID32E |
| 68371 | 16634 ChEBI | raffinose | - | builds acid from | from API 50CH acid |
| 68374 | 15963 ChEBI | ribitol | - | builds acid from | from API ID32E |
| 68371 | 15963 ChEBI | ribitol | - | builds acid from | from API 50CH acid |
| 68371 | 17814 ChEBI | salicin | - | builds acid from | from API 50CH acid |
| 119040 | 132112 ChEBI | sodium thiosulfate | + | builds gas from | |
| 68374 | 30911 ChEBI | sorbitol | + | builds acid from | from API ID32E |
| 68368 | 30911 ChEBI | sorbitol | + | fermentation | from API 20E |
| 68371 | 28017 ChEBI | starch | - | builds acid from | from API 50CH acid |
| 68374 | 17992 ChEBI | sucrose | - | builds acid from | from API ID32E |
| 68371 | 17992 ChEBI | sucrose | - | builds acid from | from API 50CH acid |
| 68368 | 17992 ChEBI | sucrose | - | fermentation | from API 20E |
| 68374 | 27082 ChEBI | trehalose | + | builds acid from | from API ID32E |
| 68371 | 27082 ChEBI | trehalose | + | builds acid from | from API 50CH acid |
| 68374 | 27897 ChEBI | tryptophan | - | energy source | from API ID32E |
| 68368 | 27897 ChEBI | tryptophan | - | energy source | from API 20E |
| 68371 | 32528 ChEBI | turanose | - | builds acid from | from API 50CH acid |
| 68374 | 16199 ChEBI | urea | - | hydrolysis | from API ID32E |
| 68368 | 16199 ChEBI | urea | - | hydrolysis | from API 20E |
| 68371 | 17151 ChEBI | xylitol | - | builds acid from | from API 50CH acid |
| @ref | Metabolite | Is sensitive | Is resistant | |
|---|---|---|---|---|
| 119040 | 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate) |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 119040 | alcohol dehydrogenase | - | 1.1.1.1 | |
| 68374 | alpha-galactosidase | + | 3.2.1.22 | from API ID32E |
| 68374 | alpha-glucosidase | - | 3.2.1.20 | from API ID32E |
| 68374 | alpha-maltosidase | - | from API ID32E | |
| 68374 | arginine dihydrolase | + | 3.5.3.6 | from API ID32E |
| 68368 | arginine dihydrolase | + | 3.5.3.6 | from API 20E |
| 68374 | beta-galactosidase | - | 3.2.1.23 | from API ID32E |
| 68368 | beta-galactosidase | - | 3.2.1.23 | from API 20E |
| 68374 | beta-glucosidase | - | 3.2.1.21 | from API ID32E |
| 68374 | beta-glucuronidase | - | 3.2.1.31 | from API ID32E |
| 119040 | catalase | + | 1.11.1.6 | |
| 68368 | cytochrome oxidase | - | 1.9.3.1 | from API 20E |
| 68368 | gelatinase | - | from API 20E | |
| 68374 | L-aspartate arylamidase | - | 3.4.11.21 | from API ID32E |
| 68374 | lipase | + | from API ID32E | |
| 119040 | lysine decarboxylase | + | 4.1.1.18 | |
| 68374 | lysine decarboxylase | + | 4.1.1.18 | from API ID32E |
| 68368 | lysine decarboxylase | + | 4.1.1.18 | from API 20E |
| 68374 | N-acetyl-beta-glucosaminidase | - | 3.2.1.52 | from API ID32E |
| 119040 | ornithine decarboxylase | + | 4.1.1.17 | |
| 68374 | ornithine decarboxylase | + | 4.1.1.17 | from API ID32E |
| 68368 | ornithine decarboxylase | + | 4.1.1.17 | from API 20E |
| 119040 | oxidase | - | ||
| 119040 | tryptophan deaminase | - | ||
| 68368 | tryptophan deaminase | - | 4.1.99.1 | from API 20E |
| 119040 | urease | - | 3.5.1.5 | |
| 68374 | urease | - | 3.5.1.5 | from API ID32E |
| 68368 | urease | - | 3.5.1.5 | from API 20E |
| @ref | ONPG | ADH (Arg) | LDC (Lys) | ODC | CIT | H2S productionH2S | URE | TDA (Trp) | IND | Acetoin production (Voges Proskauer test)VP | GEL | GLU | MAN | INO | Sor | RHA | SAC | MEL | AMY | ARA | OX | Nitrite productionNO2 | Reduction to N2N2 | MotilityMOB | Growth on MacConkey mediumMAC | OF-O | OF-F | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 3518 | - | + | + | + | + | + | - | - | - | - | - | + | + | - | + | + | - | + | - | + | - | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. | not determinedn.d. |
| @ref | ControlQ | GLY | ERY | DARA | LARA | RIB | DXYL | LXYL | ADO | MDX | GAL | GLU | FRU | MNE | SBE | RHA | DUL | INO | MAN | SOR | MDM | MDG | NAG | AMY | ARB | ESC | SAL | CEL | MAL | LAC | MEL | SAC | TRE | INU | MLZ | RAF | AMD | GLYG | XLT | GEN | TUR | LYX | TAG | DFUC | LFUC | DARL | LARL | GNT | 2KG | 5KG | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 119040 | not determinedn.d. | +/- | - | +/- | + | + | + | - | - | - | + | + | + | + | - | + | - | - | + | + | - | - | + | - | - | - | - | - | + | - | + | - | + | - | - | - | - | - | - | - | - | - | - | - | + | - | - | + | - | - |
| @ref | ODC | ADH (Arg) | LDC (Lys) | URE | LARL | GAT | 5KG | LipaseLIP | Phenol red (Acidification)RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | N-Acetyl-beta-Glucosaminidasebeta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alpha-MaltosidasealphaMAL | L-aspartic acid arylamidaseAspA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 49871 | + | + | + | - | - | - | - | + | - | - | + | + | - | - | - | - | - | - | - | + | - | + | - | - | + | + | + | - | - | + | - | - |
| @ref | Name | Strain number | |
|---|---|---|---|
| 124042 | Salmonella phage vB_Sen-PT-JD11 | DSM 9221 | |
| 124042 | Salmonella phage vB_Sen-PT-JD12 | DSM 9221 |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | 47328_E01 assembly for Salmonella enterica subsp. houtenae serovar Houten NCTC10401 | complete | 58100 | 70.32 | ||||
| 67770 | ASM869275v1 assembly for Salmonella enterica subsp. houtenae CCUG 30041T | contig | 59205 | 67.37 | ||||
| 67770 | 28193_E01 assembly for Salmonella enterica subsp. houtenae NCTC12418 | contig | 59205 | 48.62 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 85.45 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 87.75 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 59.25 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 95.44 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 100.00 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 96.66 | no |
| 125438 | aerobic | aerobicⓘ | no | 70.95 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 89.82 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.50 | no |
| 125438 | flagellated | motile2+ⓘ | yes | 76.87 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Collateral sensitivity and cross-resistance in six species of bacteria exposed to six classes of antibiotics. | Wang X, Nong L, Schaar G, Koenders B, Jonker M, de Leeuw W, Ter Kuile BH. | Microbiol Spectr | 10.1128/spectrum.00983-25 | 2025 | ||
| De novo acquisition of antibiotic resistance in six species of bacteria. | Wang X, Koster Ad, Koenders BB, Jonker M, Brul S, Ter Kuile BH. | Microbiol Spectr | 10.1128/spectrum.01785-24 | 2025 | ||
| Genetics | PathoGFAIR: a collection of FAIR and adaptable (meta)genomics workflows for (foodborne) pathogens detection and tracking. | Nasr E, Henger A, Gruning B, Zierep P, Batut B. | Gigascience | 10.1093/gigascience/giaf017 | 2025 | |
| Genetics | An evaluation of the species and subspecies of the genus Salmonella with whole genome sequence data: Proposal of type strains and epithets for novel S. enterica subspecies VII, VIII, IX, X and XI. | Pearce ME, Langridge GC, Lauer AC, Grant K, Maiden MCJ, Chattaway MA. | Genomics | 10.1016/j.ygeno.2021.07.003 | 2021 | |
| Generation of subspecies level-specific microbial diagnostic microarrays using genes amplified from subtractive suppression hybridization as microarray probes. | Bae JW, Rhee SK, Nam YD, Park YH. | Nucleic Acids Res | 10.1093/nar/gni112 | 2005 | ||
| Bacterial phylogenetic tree construction based on genomic translation stop signals. | Xu L, Kuo J, Liu JK, Wong TY. | Microb Inform Exp | 10.1186/2042-5783-2-6 | 2012 | ||
| Novel Heptaplex PCR-Based Diagnostics for Enteric Fever Caused by Typhoidal Salmonella Serovars and Its Applicability in Clinical Blood Culture. | Kim HJ, Jung Y, Kim MJ, Kim HY. | J Microbiol Biotechnol | 10.4014/jmb.2307.07031 | 2023 | ||
| Genetics | Real-Time PCR Method for the Rapid Detection and Quantification of Pathogenic Staphylococcus Species Based on Novel Molecular Target Genes. | Kim E, Yang SM, Won JE, Kim DY, Kim DS, Kim HY. | Foods | 10.3390/foods10112839 | 2021 | |
| Enzymology | Molecular method for detection of total coliforms in drinking water samples. | Maheux AF, Boudreau DK, Bisson MA, Dion-Dupont V, Bouchard S, Nkuranga M, Bergeron MG, Rodriguez MJ. | Appl Environ Microbiol | 10.1128/aem.00546-14 | 2014 | |
| Metabolism | Receptor diversity and host interaction of bacteriophages infecting Salmonella enterica serovar Typhimurium. | Shin H, Lee JH, Kim H, Choi Y, Heu S, Ryu S. | PLoS One | 10.1371/journal.pone.0043392 | 2012 | |
| Phylogeny | Comparison of Salmonella enterica serovar Typhimurium LT2 and non-LT2 salmonella genomic sequences, and genotyping of salmonellae by using PCR. | Kim HJ, Park SH, Kim HY. | Appl Environ Microbiol | 10.1128/aem.00138-06 | 2006 | |
| Enzymology | Rapid concentration and molecular enrichment approach for sensitive detection of Escherichia coli and Shigella species in potable water samples. | Maheux AF, Bissonnette L, Boissinot M, Bernier JL, Huppe V, Picard FJ, Berube E, Bergeron MG. | Appl Environ Microbiol | 10.1128/aem.02337-10 | 2011 | |
| PCR amplification of the fimA gene sequence of Salmonella typhimurium, a specific method for detection of Salmonella spp. | Cohen HJ, Mechanda SM, Lin W. | Appl Environ Microbiol | 10.1128/aem.62.12.4303-4308.1996 | 1996 |
| #3518 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 9221 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #40233 | ; Curators of the CIP; |
| #49871 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 30041 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68368 | Automatically annotated from API 20E . |
| #68371 | Automatically annotated from API 50CH acid . |
| #68374 | Automatically annotated from API ID32E . |
| #119040 | Collection of Institut Pasteur ; Curators of the CIP; CIP 82.32 |
| #124042 | Johannes Wittmann, Clara Rolland, Lorenz Reimer, Joaquim Sardà: PhageDive . |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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