Strain identifier

BacDive ID: 5123

Type strain: Yes

Species: Salmonella enterica subsp. houtenae

Strain Designation: 264-66

Strain history: CIP <- 1982, L. Le Minor, Inst. Pasteur, Paris, France: strain 264-66, Salmonella choleraesuis subsp. houtenae

NCBI tax ID(s): 59205 (subspecies)

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General

@ref: 3518

BacDive-ID: 5123

DSM-Number: 9221

keywords: genome sequence, 16S sequence, Bacteria, facultative anaerobe, mesophilic, motile

description: Salmonella enterica subsp. houtenae 264-66 is a facultative anaerobe, mesophilic, motile bacterium of the family Enterobacteriaceae.

NCBI tax id

  • NCBI tax id: 59205
  • Matching level: subspecies

strain history

@refhistory
3518<- CIP <- L. Le Minor
67770R. Sakazaki <-- NCTC 10401 <-- F. Kauffmann.
119040CIP <- 1982, L. Le Minor, Inst. Pasteur, Paris, France: strain 264-66, Salmonella choleraesuis subsp. houtenae

doi: 10.13145/bacdive5123.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Enterobacteriaceae
  • genus: Salmonella
  • species: Salmonella enterica subsp. houtenae
  • full scientific name: Salmonella enterica subsp. houtenae (Le Minor et al. 1985 ex Le Minor et al. 1970) Le Minor and Popoff 1987

  • synonyms

    @refsynonym
    20215Salmonella choleraesuis subsp. houtenae
    20215Salmonella houtenae

@ref: 3518

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Enterobacteriaceae

genus: Salmonella

species: Salmonella enterica subsp. houtenae

full scientific name: Salmonella enterica subsp. houtenae (Le Minor et al. 1985) Le Minor and Popoff 1987

strain designation: 264-66

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes93.237
6948099.982negative
119040yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
3518CASO AGAR (MERCK 105458) (DSMZ Medium 220)yeshttps://mediadive.dsmz.de/medium/220Name: CASO AGAR (Merck 105458) (DSMZ Medium 220) Composition: Agar 15.0 g/l Casein peptone 15.0 g/l NaCl 5.0 g/l Soy peptone 5.0 g/l Distilled water
40233MEDIUM 3 - Columbia agaryesColumbia agar (39.000 g);distilled water (1000.000 ml)
119040CIP Medium 3yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=3

culture temp

@refgrowthtypetemperaturerange
3518positivegrowth37mesophilic
40233positivegrowth30mesophilic
49871positivegrowth30mesophilic
67770positivegrowth37mesophilic
119040positivegrowth10-41
119040nogrowth5psychrophilic

Physiology and metabolism

oxygen tolerance

  • @ref: 119040
  • oxygen tolerance: facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.898

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose+builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371D-lyxose-builds acid from62318
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol-builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose+builds acid from27082
68371sucrose-builds acid from17992
68371melibiose+builds acid from28053
68371lactose-builds acid from17716
68371maltose+builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol+builds acid from17924
68371D-mannitol+builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose+builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose+builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose+builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose+builds acid from30849
68371erythritol-builds acid from17113
68368L-arabinose+fermentation30849
68368amygdalin-fermentation27613
68368melibiose+fermentation28053
68368sucrose-fermentation17992
68368L-rhamnose+fermentation62345
68368sorbitol+fermentation30911
68368myo-inositol-fermentation17268
68368D-mannitol+fermentation16899
68368D-glucose+fermentation17634
68368gelatin-hydrolysis5291
68368tryptophan-energy source27897
68368urea-hydrolysis16199
68368citrate+assimilation16947
68368ornithine+degradation18257
68368lysine+degradation25094
68368arginine+hydrolysis29016
119040citrate+carbon source16947
119040nitrate+reduction17632
119040nitrite+reduction16301
119040malonate-assimilation15792
119040sodium thiosulfate+builds gas from132112
119040glucose+degradation17234
68374ornithine+degradation18257
68374arginine+hydrolysis29016
68374lysine+degradation25094
68374urea-hydrolysis16199
68374L-arabitol-builds acid from18403
68374D-galacturonic acid-builds acid from18024
68374Potassium 5-ketogluconate-builds acid from
68374D-mannitol+builds acid from16899
68374maltose+builds acid from17306
68374ribitol-builds acid from15963
68374palatinose-builds acid from18394
68374malonate-assimilation15792
68374tryptophan-energy source27897
68374D-glucose+builds acid from17634
68374sucrose-builds acid from17992
68374L-arabinose+builds acid from30849
68374D-arabitol-builds acid from18333
68374trehalose+builds acid from27082
68374L-rhamnose+builds acid from62345
68374myo-inositol-builds acid from17268
68374cellobiose-builds acid from17057
68374sorbitol+builds acid from30911

antibiotic resistance

  • @ref: 119040
  • metabolite: 0129 (2,4-Diamino-6,7-di-iso-propylpteridine phosphate)
  • is antibiotic: yes
  • is sensitive: yes
  • is resistant: no

metabolite production

@refChebi-IDmetaboliteproduction
6837435581indoleno
6836815688acetoinno
6836835581indoleno
6836816136hydrogen sulfideyes
11904035581indoleno

metabolite tests

@refChebi-IDmetaboliteindole testvoges-proskauer-testmethylred-test
6837435581indole-
6836815688acetoin-
6836835581indole-
11904015688acetoin-
11904017234glucose+

enzymes

@refvalueactivityec
68374L-aspartate arylamidase-3.4.11.21
68374alpha-maltosidase-
68374alpha-galactosidase+3.2.1.22
68374alpha-glucosidase-3.2.1.20
68374beta-galactosidase-3.2.1.23
68374N-acetyl-beta-glucosaminidase-3.2.1.52
68374beta-glucuronidase-3.2.1.31
68374beta-glucosidase-3.2.1.21
68374lipase+
68374urease-3.5.1.5
68374lysine decarboxylase+4.1.1.18
68374arginine dihydrolase+3.5.3.6
68374ornithine decarboxylase+4.1.1.17
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase-4.1.99.1
68368urease-3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase+4.1.1.18
68368arginine dihydrolase+3.5.3.6
68368beta-galactosidase-3.2.1.23
119040oxidase-
119040alcohol dehydrogenase-1.1.1.1
119040catalase+1.11.1.6
119040lysine decarboxylase+4.1.1.18
119040ornithine decarboxylase+4.1.1.17
119040tryptophan deaminase-
119040urease-3.5.1.5

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
3518-+++++-----++-++-+-+-

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
119040+/--+/-+++---++++-+--++--+-----+-+-+-----------+--+--

API ID32E

@refODCADH ArgLDC LysURELARLGAT5KGLIPRPbeta GLUMANMALADOPLEbeta GURMNTINDbeta NAGbeta GALGLUSACLARADARLalpha GLUalpha GALTRERHAINOCELSORalphaMALAspA
49871+++----+--++-------+-+--+++--+--

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
35182Risk group (German classification)
1190402Risk group (French classification)

Sequence information

16S sequences

@refdescriptionaccessionlengthdatabaseNCBI tax ID
20218Salmonella enterica subsp. houtenae strain DSM 9221 16S ribosomal RNA gene, partial sequenceEU0146841437ena59205
67770Salmonella enterica subsp. houtenae gene for 16S ribosomal RNA, partial sequence, strain: JCM 1655LC0609081464ena59205

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Salmonella enterica subsp. houtenae serovar Houten NCTC10401GCA_900478215completencbi58100
66792Salmonella enterica subsp. houtenae serovar Houten strain NCTC1040158100.3completepatric58100
66792Salmonella enterica subsp. houtenae strain NCTC1241859205.13wgspatric59205
67770Salmonella enterica subsp. houtenae NCTC12418GCA_900706745contigncbi59205
67770Salmonella enterica subsp. houtenae CCUG 30041TGCA_008692755contigncbi59205

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
flagellatedno59.076no
gram-positiveno98.832no
anaerobicno95.379no
aerobicyes77.386no
halophileno92.334no
spore-formingno94.507no
thermophileno98.691yes
glucose-utilyes93.331no
motileyes89.945no
glucose-fermentyes93.771yes

External links

@ref: 3518

culture collection no.: DSM 9221, ATCC 43974, CIP 82.32, NCTC 10401, CCUG 30041, JCM 1655, ATCC 29834, BCRC 15578, KCTC 12399, NCTC 12418

straininfo link

  • @ref: 74615
  • straininfo: 92944

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
3518Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 9221)https://www.dsmz.de/collection/catalogue/details/culture/DSM-9221
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
40233Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/11302
49871Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 30041)https://www.ccug.se/strain?id=30041
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
68374Automatically annotated from API ID32E
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
74615Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID92944.1StrainInfo: A central database for resolving microbial strain identifiers
119040Curators of the CIPCollection of Institut Pasteur (CIP 82.32)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%2082.32