Name: Pantoea deleyi BD 767
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5009

Type strain:

Species: Pantoea deleyi

Strain Designation: BD 767, R-31523

Culture col. no.: DSM 23079, BCC 109, LMG 24200

Strain history: <- T. Coutinho, Forestry and Agricultural Biotechnology Inst., Univ. Pretoria, South Africa; R-31523

NCBI tax ID(s): 470932 (species)

SI-ID 265256

BCC109, LMG 24200

Section

Pantoea deleyi BD 767 is a facultative anaerobe, mesophilic, Gram-negative bacterium that was isolated from Eucalyptus.

Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Erwiniaceae*
	Genus	*Pantoea*
	Species	**Pantoea deleyi**
	Full Scientific Name (LPSN)	Pantoea deleyi Brady et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29239]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.987

[Ref.: #29239]	Cell length	1.5-3.0 µm

[Ref.: #29239]	Cell width	0.9 µm

[Ref.: #29239]	Cell shape	rod-shaped

[Ref.: #29239]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.542

Multimedia content

[Ref.: #16696]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16696]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #16696]

Culture medium growth

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Culture medium link

Medium recipe at MediaDive

[Ref.: #16696]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16696]			growth	28 °C

[Ref.: #16696]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29239]

Oxygen tolerance

facultative anaerobe

[Ref.: #29239]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.934

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29239]	alanine ChEBI	+	carbon source
[Ref.: #29239]	arabinose ChEBI	+	carbon source
[Ref.: #29239]	aspartate ChEBI	+	carbon source
[Ref.: #29239]	citrate ChEBI	+	carbon source
[Ref.: #29239]	fructose ChEBI	+	carbon source
[Ref.: #29239]	galactose ChEBI	+	carbon source
[Ref.: #29239]	glucose ChEBI	+	carbon source
[Ref.: #29239]	glutamate ChEBI	+	carbon source
[Ref.: #29239]	glycerol ChEBI	+	carbon source
[Ref.: #29239]	L-arabitol ChEBI	+	carbon source
[Ref.: #29239]	malonate ChEBI	+	carbon source
[Ref.: #29239]	maltose ChEBI	+	carbon source
[Ref.: #29239]	mannitol ChEBI	+	carbon source
[Ref.: #29239]	mannose ChEBI	+	carbon source
[Ref.: #29239]	proline ChEBI	+	carbon source
[Ref.: #29239]	rhamnose ChEBI	+	carbon source
[Ref.: #29239]	ribose ChEBI	+	carbon source
[Ref.: #29239]	serine ChEBI	+	carbon source
[Ref.: #29239]	succinate ChEBI	+	carbon source
[Ref.: #29239]	sucrose ChEBI	+	carbon source
[Ref.: #29239]	trehalose ChEBI	+	carbon source
[Ref.: #29239]	tween 40 ChEBI	+	carbon source
[Ref.: #29239]	tween 80 ChEBI	+	carbon source
[Ref.: #29239]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16696]	Sample type/isolated from	Eucalyptus
[Ref.: #16696]	Country	Uganda
[Ref.: #16696]	Country ISO 3 Code	UGA
[Ref.: #16696]	Continent	Africa
* marker position based on {}

Isolation sources categories

#Host

#Plants

#Tree

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY173023 (>99% sequence identity) for Pantoea ananatis from Microbeatlas

Aquatic Samples	764
Soil Samples	845
Animal Samples	5045
Plant Samples	2149
Total Samples	8803

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16696]	Pantoea deleyi strain LMG 24200 16S ribosomal RNA gene, partial sequence	EF688011	1443	ENA	470932 tax ID
[Ref.: #20218]	Pantoea ananatis strain BCC0109 16S ribosomal RNA gene, partial sequence	AY173023	1325	ENA	553 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pantoea deleyi LMG 24200	GCA_006494415	contig	GenBank	470932 tax ID	*
[Ref.: #66792]	Pantoea deleyi LMG 24200	GCA_002095375	contig	GenBank	470932 tax ID	*
[Ref.: #66792]	Pantoea deleyi strain LMG 24200	470932.7	wgs	PATRIC	470932 tax ID	*
[Ref.: #66792]	Pantoea deleyi strain LMG 24200	470932.3	wgs	PATRIC	470932 tax ID	*
[Ref.: #66792]	Pantoea deleyi LMG 24200	2791355166	draft	JGI IMG/M	470932 tax ID	*
[Ref.: #66792]	Pantoea deleyi LMG24200	GCA_022647325	complete	GenBank	470932 tax ID	*

[Ref.: #16696]	GC-content	58.6 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29239]	GC-content	58.6 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pantoea deleyi strain LMG 24200 PATRIC: 470932.3
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pantoea deleyi LMG24200 NCBI: GCA_022647325.1
[Ref.: #69480]	flagellated	no	69.385	no
[Ref.: #69480]	gram-positive	no	98.267	yes
[Ref.: #69480]	anaerobic	no	98.671	yes
[Ref.: #69480]	aerobic	no	74.662	no
[Ref.: #69480]	halophile	no	86.28	no
[Ref.: #69480]	spore-forming	no	95.337	yes
[Ref.: #69480]	motile	yes	92.508	yes
[Ref.: #69480]	glucose-ferment	yes	89.741	no
[Ref.: #69480]	thermophile	no	99.05	no
[Ref.: #69480]	glucose-util	yes	95.198	yes

Availability in culture collections External links

[Ref.: #16696]

Culture collection no.

DSM 23079, BCC 109, LMG 24200

[Ref.: #74504]

SI-ID 265256

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Pantoea vagans sp. nov., Pantoea eucalypti sp. nov., Pantoea deleyi sp. nov. and Pantoea anthophila sp. nov.	Brady CL, Venter SN, Cleenwerck I, Engelbeen K, Vancanneyt M, Swings J, Coutinho TA	Int J Syst Evol Microbiol	10.1099/ijs.0.009241-0	2009	*

References

#16696

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23079

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#29239

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25659 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74504

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID265256.1 )

#25659

IJSEM 2339 2009 ( DOI 10.1099/ijs.0.009241-0 , PubMed 19620357 )

* These data were automatically processed and therefore are not curated

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Pantoea deleyi strain LMG 24200

Pantoea deleyi LMG24200

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