Pantoea anthophila (DSM 23080, LMG 2558, NCPPB 1682)

Name: Pantoea anthophila (DSM 23080, LMG 2558, NCPPB 1682)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 5008

Type strain

Strain Designation BD 871

Culture col. no. DSM 23080 LMG 2558 NCPPB 1682 BD 871

NCBI tax ID(s) 470931

Special Collections DSMZ Literature strains

History <- T. Coutinho, Forestry and Agricultural Biotechnology Inst., Univ. Pretoria, South Africa; BD 871

Links

Pantoea anthophila BD 871 is a facultative anaerobe, Gram-negative, motile plant pathogen that was isolated from Impatiens balsamina.

Gram-negative motile rod-shaped facultative anaerobe plant pathogen genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 3804

LMG 2558,NCPPB 1682

@ref 20215

Last LPSN update 2026-02-09 11:18:52

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Enterobacterales

Family Erwiniaceae

Genus Pantoea

Species Pantoea anthophila

Full scientific name Pantoea anthophila Brady et al. 2009

BacDive ID	Other strains from **Pantoea anthophila** (1)	Type strain
135974	P. anthophila 02001, 665-85, CIP 101838

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
29239	negative	1.2-2.5 µm	0.9 µm	rod-shaped
125439	negative				99.3
125438	negative				99.75

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance	Confidence
29239	facultative anaerobe
125439	aerobe	98.4

Spore formation

@ref	Spore formation	Confidence
29239
125439		96.3
125438		90.881

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
29239	16449 ChEBI	alanine	+	carbon source
29239	22599 ChEBI	arabinose	+	carbon source
29239	35391 ChEBI	aspartate	+	carbon source
29239	17057 ChEBI	cellobiose	+	carbon source
29239	16947 ChEBI	citrate	+	carbon source
29239	28757 ChEBI	fructose	+	carbon source
29239	28260 ChEBI	galactose	+	carbon source
29239	17234 ChEBI	glucose	+	carbon source
29239	29987 ChEBI	glutamate	+	carbon source
29239	17754 ChEBI	glycerol	+	carbon source
29239	28087 ChEBI	glycogen	+	carbon source
29239	15792 ChEBI	malonate	+	carbon source
29239	17306 ChEBI	maltose	+	carbon source
29239	29864 ChEBI	mannitol	+	carbon source
29239	37684 ChEBI	mannose	+	carbon source
29239	26271 ChEBI	proline	+	carbon source
29239	26546 ChEBI	rhamnose	+	carbon source
29239	33942 ChEBI	ribose	+	carbon source
29239	17822 ChEBI	serine	+	carbon source
29239	30031 ChEBI	succinate	+	carbon source
29239	17992 ChEBI	sucrose	+	carbon source
29239	27082 ChEBI	trehalose	+	carbon source
29239	53423 ChEBI	tween 40	+	carbon source
29239	53426 ChEBI	tween 80	+	carbon source
29239	18222 ChEBI	xylose	+	carbon source

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Host	#Plants	#Herbaceous plants (Grass,Crops)

Isolation

@ref	Sample type	Host species	Country	Country ISO 3 Code	Continent
16697	Impatiens balsamina	Impatiens balsamina	India	IND	Asia

Taxonmaps

69479

Global distribution of 16S sequence FJ611809 (>99% sequence identity) for Pantoea ananatis from Microbeatlas

Aquatic Samples	764
Soil Samples	845
Animal Samples	5045
Plant Samples	2149
Total Samples	8803

Interaction and safety

Risk assessment

@ref	Pathogenicity plant	Biosafety level	Biosafety level comment
16697		1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM649437v1 assembly for Pantoea anthophila LMG 2558	contig	GCA_006494375	470931.11	8118168641	470931	66.05

16S sequences

@ref	Description	Accession	Length	NCBI tax ID
20218	Pantoea anthophila strain LMG2558 16S ribosomal RNA gene, partial sequence	FJ611809	1387	470931
16697	Pantoea anthophila strain LMG 2558 16S ribosomal RNA gene, partial sequence	EF688010	1432	470931
124043	Pantoea anthophila strain LMG 2558 16S ribosomal RNA gene, partial sequence.	OP835895	1374	470931
124043	Pantoea anthophila strain LMG 2558 16S ribosomal RNA gene, partial sequence.	MN077163	1439	470931

GC content

@ref	GC-content (mol%)	Method
16697	57.5	high performance liquid chromatography (HPLC)
29239	57.5

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Pantoea anthophila LMG 2558
NCBI: GCA_006494375

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	spore_formation	BacteriaNetⓘ	no	96.30	no
125439	motility	BacteriaNetⓘ	yes	70.10	no
125439	gram_stain	BacteriaNetⓘ	negative	99.30	no
125439	oxygen_tolerance	BacteriaNetⓘ	aerobe	98.40	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Pantoea anthophila strain LMG 2558
PATRIC: 470931.11

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	99.75	yes
125438	anaerobic	anaerobicⓘ	no	99.15	yes
125438	spore-forming	spore-formingⓘ	no	90.88	yes
125438	aerobic	aerobicⓘ	no	68.50	yes
125438	thermophilic	thermophileⓘ	no	100.00	no
125438	flagellated	motile2+ⓘ	yes	78.96	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Genetics	Draft genome sequence of Pantoea anthophila PGPR-34, a chrysanthemum-associated Rhizobacterium with implications for plant-microbe interactions.	Hossain TJ.	Microbiol Resour Announc	10.1128/mra.00346-25	2025
	Draft Genome Sequence of Pantoea anthophila Strain 11-2 from Hypersaline Lake Laysan, Hawaii.	Wan X, Hou S, Phan N, Malone Moss JS, Donachie SP, Alam M.	Genome Announc	10.1128/genomea.00321-15	2015
	Endophytic Seed-Associated Bacteria as Plant Growth Promoters of Cuban Rice (Oryza sativa L.).	Hernandez I, Taule C, Perez-Perez R, Battistoni F, Fabiano E, Villanueva-Guerrero A, Napoles MC, Herrera H.	Microorganisms	10.3390/microorganisms11092317	2023
Genetics	Draft genome and description of Mixta mediterraneensis strain Marseille-Q2057^T sp.nov., a new bacterium isolated from human healthy skin.	Boxberger M, Antezack A, Magnien S, Cassir N, La Scola B.	New Microbes New Infect	10.1016/j.nmni.2021.100840	2021
Phylogeny	Pantoea vagans sp. nov., Pantoea eucalypti sp. nov., Pantoea deleyi sp. nov. and Pantoea anthophila sp. nov.	Brady CL, Venter SN, Cleenwerck I, Engelbeen K, Vancanneyt M, Swings J, Coutinho TA	Int J Syst Evol Microbiol	10.1099/ijs.0.009241-0	2009

References

#16697	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23080
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#20218	Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )
#25659	IJSEM 2339 2009 ( DOI 10.1099/ijs.0.009241-0 , PubMed 19620357 )
#29239	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25659
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#124043	Isabel Schober, Julia Koblitz: Data extracted from sequence databases, automatically matched based on designation and taxonomy .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Pantoea anthophila (DSM 23080, LMG 2558, NCPPB 1682)

Name and taxonomic classification

Morphology

Cell morphology

Culture and growth conditions

Physiology and metabolism

Oxygen tolerance

Spore formation

Metabolite utilization

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_006494375

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

BacDive

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