Name: Pantoea eucalypti BD 769
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 5010

Type strain:

Species: Pantoea eucalypti

Strain Designation: BD 769, R-25678

Culture col. no.: DSM 23077, BCC 076, LMG 24197

Strain history: <- T. A. Coutinho, Forestry and Agricultural Biotechnology Inst., Univ. Pretoria, South Africa; R-25678

NCBI tax ID(s): 470933 (species)

SI-ID 281216

LMG 24197, BCC 076

Section

Pantoea eucalypti BD 769 is a facultative anaerobe, mesophilic, Gram-negative plant pathogen that was isolated from Eucalyptus sp..

Gram-negative
motile
rod-shaped
facultative anaerobe
mesophilic
plant pathogen
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Erwiniaceae*
	Genus	*Pantoea*
	Species	**Pantoea eucalypti**
	Full Scientific Name (LPSN)	Pantoea eucalypti Brady et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29239]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.984

[Ref.: #29239]	Cell length	1.5-3.0 µm

[Ref.: #29239]	Cell width	0.9 µm

[Ref.: #29239]	Cell shape	rod-shaped

[Ref.: #29239]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %97.46

Multimedia content

[Ref.: #16694]

Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16694]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #16694]

Culture medium growth

[Ref.: #16694]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16694]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #16694]			growth	28 °C

[Ref.: #16694]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29239]

Oxygen tolerance

facultative anaerobe

[Ref.: #29239]	Ability of spore formation	no
[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.972

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29239]	alanine ChEBI	+	carbon source
[Ref.: #29239]	arabinose ChEBI	+	carbon source
[Ref.: #29239]	aspartate ChEBI	+	carbon source
[Ref.: #29239]	cellobiose ChEBI	+	carbon source
[Ref.: #29239]	citrate ChEBI	+	carbon source
[Ref.: #29239]	fructose ChEBI	+	carbon source
[Ref.: #29239]	galactose ChEBI	+	carbon source
[Ref.: #29239]	glucose ChEBI	+	carbon source
[Ref.: #29239]	glutamate ChEBI	+	carbon source
[Ref.: #29239]	glycerol ChEBI	+	carbon source
[Ref.: #29239]	lactose ChEBI	+	carbon source
[Ref.: #29239]	maltose ChEBI	+	carbon source
[Ref.: #29239]	mannitol ChEBI	+	carbon source
[Ref.: #29239]	mannose ChEBI	+	carbon source
[Ref.: #29239]	proline ChEBI	+	carbon source
[Ref.: #29239]	rhamnose ChEBI	+	carbon source
[Ref.: #29239]	ribose ChEBI	+	carbon source
[Ref.: #29239]	serine ChEBI	+	carbon source
[Ref.: #29239]	succinate ChEBI	+	carbon source
[Ref.: #29239]	sucrose ChEBI	+	carbon source
[Ref.: #29239]	trehalose ChEBI	+	carbon source
[Ref.: #29239]	tween 40 ChEBI	+	carbon source
[Ref.: #29239]	tween 80 ChEBI	+	carbon source
[Ref.: #29239]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16694]	Sample type/isolated from	Eucalyptus sp.
[Ref.: #16694]	Host species	Eucalyptus
[Ref.: #16694]	Country	Uruguay
[Ref.: #16694]	Country ISO 3 Code	URY
[Ref.: #16694]	Continent	Middle and South America
* marker position based on {}

Isolation sources categories

#Host	#Plants	#Shrub (Scrub)
#Host	#Plants	#Tree

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16694]	Pathogenicity (plant)	yes
[Ref.: #16694]	Biosafety level	1	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16694]	Pantoea eucalypti strain LMG 24197 16S ribosomal RNA gene, partial sequence	EF688009	1348	ENA	470933 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Pantoea eucalypti LMG 24197	GCA_009646115	complete	GenBank	470933 tax ID	*
[Ref.: #66792]	Pantoea eucalypti LMG 24197	GCA_006494355	contig	GenBank	470933 tax ID	*
[Ref.: #66792]	Pantoea eucalypti strain LMG 24197	470933.10	wgs	PATRIC	470933 tax ID	*
[Ref.: #66792]	Pantoea eucalypti strain LMG 24197	470933.11	complete	PATRIC	470933 tax ID	*

[Ref.: #16694]	GC-content	54.5 mol%	high performance liquid chromatography (HPLC)
[Ref.: #29239]	GC-content	54.5 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Pantoea eucalypti LMG 24197 NCBI: GCA_009646115.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Pantoea eucalypti LMG 24197 NCBI: GCA_009646115.1
[Ref.: #69480]	motile	yes	93.818	yes
[Ref.: #69480]	flagellated	no	66.745	no
[Ref.: #69480]	gram-positive	no	97.918	yes
[Ref.: #69480]	anaerobic	no	98.923	no
[Ref.: #69480]	aerobic	no	71.571	yes
[Ref.: #69480]	halophile	no	84.936	no
[Ref.: #69480]	spore-forming	no	94.604	yes
[Ref.: #69480]	glucose-util	yes	95.317	yes
[Ref.: #69480]	glucose-ferment	yes	88.937	no
[Ref.: #69480]	thermophile	no	99.214	yes

Availability in culture collections External links

[Ref.: #16694]

Culture collection no.

DSM 23077, BCC 076, LMG 24197

[Ref.: #74505]

SI-ID 281216

Literature:

	Title	Authors	Journal	DOI	Year
Phylogeny	Pantoea vagans sp. nov., Pantoea eucalypti sp. nov., Pantoea deleyi sp. nov. and Pantoea anthophila sp. nov.	Brady CL, Venter SN, Cleenwerck I, Engelbeen K, Vancanneyt M, Swings J, Coutinho TA	Int J Syst Evol Microbiol	10.1099/ijs.0.009241-0	2009	*
	Relationship of the Pine Growth Promoting Pantoea eucalypti FBS135 with Type Strains P. eucalypti LMG 24197(T) and P. vagans 24199(T).	Wei C, Song Z, Lu Y, Zhao Y, Fan B	Life (Basel)	10.3390/life11070608	2021	*

References

#16694

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23077

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29239

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25659 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74505

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID281216.1 )

#25659

IJSEM 2339 2009 ( DOI 10.1099/ijs.0.009241-0 , PubMed 19620357 )

* These data were automatically processed and therefore are not curated

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Pantoea eucalypti LMG 24197

Pantoea eucalypti LMG 24197

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