Name: Aliagarivorans taiwanensis AAT1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 499

Type strain:

Species: Aliagarivorans taiwanensis

Strain Designation: AAT1

Culture col. no.: DSM 22990, BCRC 17889, JCM 15537

Strain history: W. Y. Shieh AAT1.

NCBI tax ID(s): 1120970 (strain), 561966 (species)

SI-ID 399295

DSM 22990

Section

Aliagarivorans taiwanensis AAT1 is an anaerobe, mesophilic, Gram-negative bacterium that was isolated from shallow coastal water.

Gram-negative
motile
rod-shaped
anaerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Aliagarivorans*
	Species	**Aliagarivorans taiwanensis**
	Full Scientific Name (LPSN)	Aliagarivorans taiwanensis Jean et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29188]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.937

[Ref.: #29188]	Cell length	1.95 µm

[Ref.: #29188]	Cell width	0.85 µm

[Ref.: #29188]	Cell shape	rod-shaped

[Ref.: #29188]	Motility	yes
[Ref.: #69480]	Motility	yes Confidence in %98.499

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16639]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16639]

Culture medium growth

[Ref.: #16639]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16639]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16639]	growth	28 °C
[Ref.: #29188]	growth	15-37 °C
[Ref.: #29188]	optimum	27.5 °C
[Ref.: #67770]	growth	30 °C

[Ref.: #16639]	Temperature range	mesophilic
[Ref.: #29188]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

	pH	Kind of pH		pH
[Ref.: #29188]			optimum	8
[Ref.: #29188]			growth	7.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29188]

Oxygen tolerance

anaerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.881

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29188]		NaCl		growth	1.0-7.0	%
[Ref.: #29188]		NaCl		optimum	3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29188]	aspartate ChEBI	+	carbon source
[Ref.: #29188]	cellobiose ChEBI	+	carbon source
[Ref.: #29188]	fructose ChEBI	+	carbon source
[Ref.: #29188]	galactose ChEBI	+	carbon source
[Ref.: #29188]	glucose ChEBI	+	carbon source
[Ref.: #29188]	glutamate ChEBI	+	carbon source
[Ref.: #29188]	lactose ChEBI	+	carbon source
[Ref.: #29188]	malate ChEBI	+	carbon source
[Ref.: #29188]	maltose ChEBI	+	carbon source
[Ref.: #29188]	mannitol ChEBI	+	carbon source
[Ref.: #29188]	mannose ChEBI	+	carbon source
[Ref.: #29188]	melibiose ChEBI	+	carbon source
[Ref.: #29188]	nitrate ChEBI	+	reduction
[Ref.: #29188]	ornithine ChEBI	+	carbon source
[Ref.: #29188]	raffinose ChEBI	+	carbon source
[Ref.: #29188]	sucrose ChEBI	+	carbon source
[Ref.: #29188]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #29188]	acid phosphatase	+	3.1.3.2
[Ref.: #29188]	alkaline phosphatase	+	3.1.3.1
[Ref.: #29188]	alpha-galactosidase	+	3.2.1.22
[Ref.: #29188]	gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16639]	Sample type/isolated from	shallow coastal water
[Ref.: #16639]	Geographic location (country and/or sea, region)	Tainan, An-Ping Harbour
[Ref.: #16639]	Country	Taiwan
[Ref.: #16639]	Country ISO 3 Code	TWN
[Ref.: #16639]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Shallow coastal water from An-Ping Harbour
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tainan
[Ref.: #67770]	Country	Taiwan
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental	#Aquatic	#Marine
#Environmental	#Terrestrial	#Coast

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16639]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16639]	Aliagarivorans taiwanensis strain AAT1 16S ribosomal RNA gene, partial sequence	FJ167391	1461	ENA	561966 tax ID
[Ref.: #67770]	Aliagarivorans taiwanensis JCM 15537 gene for 16S ribosomal RNA, partial sequence	LC508798	1476	ENA	561966 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aliagarivorans taiwanensis DSM 22990	GCA_000429505	scaffold	GenBank	1120970 tax ID
[Ref.: #66792]	Aliagarivorans taiwanensis DSM 22990	1120970.3	wgs	PATRIC	1120970 tax ID	*
[Ref.: #66792]	Aliagarivorans taiwanensis DSM 22990	2524614757	draft	JGI IMG/M	1120970 tax ID	*

[Ref.: #16639]	GC-content	52.4 mol%
[Ref.: #67770]	GC-content	52.4 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aliagarivorans taiwanensis DSM 22990 DSM 22990 NCBI: GCA_000429505.1
[Ref.: #69481]	spore-forming	no	100	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aliagarivorans taiwanensis DSM 22990 PATRIC: 1120970.3
[Ref.: #69480]	motile	yes	88.961	yes
[Ref.: #69480]	flagellated	yes	87.915	no
[Ref.: #69480]	gram-positive	no	98.908	no
[Ref.: #69480]	anaerobic	no	85.423	yes
[Ref.: #69480]	aerobic	yes	70.003	no
[Ref.: #69480]	halophile	yes	84.628	no
[Ref.: #69480]	spore-forming	no	96.899	no
[Ref.: #69480]	glucose-util	yes	88.349	no
[Ref.: #69480]	thermophile	no	99.457	yes
[Ref.: #69480]	glucose-ferment	yes	79.119	no

Availability in culture collections External links

[Ref.: #16639]

Culture collection no.

DSM 22990, BCRC 17889, JCM 15537

[Ref.: #70178]

SI-ID 399295

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aliagarivorans marinus gen. nov., sp. nov. and Aliagarivorans taiwanensis sp. nov., facultatively anaerobic marine bacteria capable of agar degradation.	Jean WD, Huang SP, Liu TY, Chen JS, Shieh WY	Int J Syst Evol Microbiol	10.1099/ijs.0.008235-0	2009	*

References

#16639

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 22990

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29188

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25612 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70178

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID399295.1 )

#25612

IJSEM 1880 2009 ( DOI 10.1099/ijs.0.008235-0 , PubMed 19567569 )

* These data were automatically processed and therefore are not curated

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Aliagarivorans taiwanensis DSM 22990 DSM 22990

Aliagarivorans taiwanensis DSM 22990

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