Name: Aliagarivorans marinus AAM1
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 498

Type strain:

Species: Aliagarivorans marinus

Strain Designation: AAM1

Culture col. no.: DSM 23064, BCRC 17888, JCM 15522, JCM 31907

Strain history: DSM 23064 <-- W. Y. Shieh, Inst. of Oceanogr., Natl. Taiwan Univ., Taiwan; AAM1 <-- W. D. Jean, Leader Univ., Taiwan.

NCBI tax ID(s): 1120969 (strain), 561965 (species)

SI-ID 401158

DSM 23064

Special Collections

Section

Aliagarivorans marinus AAM1 is an anaerobe, Gram-negative, motile bacterium that was isolated from seawater sample.

Gram-negative
motile
rod-shaped
anaerobe
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Aliagarivorans*
	Species	**Aliagarivorans marinus**
	Full Scientific Name (LPSN)	Aliagarivorans marinus Jean et al. 2009

Information on morphological and physiological properties Morphology

[Ref.: #29188]	Gram stain	negative
[Ref.: #69480]	Gram stain	negative Confidence in %99.5

[Ref.: #29188]	Cell length	1.7 µm

[Ref.: #29188]	Cell width	1.1 µm

[Ref.: #29188]	Cell shape	rod-shaped

[Ref.: #29188]	Motility	yes

Multimedia content

[Ref.: #66793]

Caption:

electron microscopic image

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Intellectual property rights:

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electron microscopic image

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Intellectual property rights:

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electron microscopic image

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Intellectual property rights:

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electron microscopic image

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Intellectual property rights:

Information on culture and growth conditions Culture and growth conditions

[Ref.: #16685]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #16685]

Culture medium growth

[Ref.: #16685]

Culture medium link

Medium recipe at MediaDive

[Ref.: #16685]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #16685]	growth	28 °C
[Ref.: #29188]	growth	15-37 °C
[Ref.: #29188]	optimum	27.5 °C
[Ref.: #67770]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #29188]			optimum	8
[Ref.: #29188]			growth	7.0-9.0

Information on physiology and metabolism Physiology and metabolism

[Ref.: #29188]

Oxygen tolerance

anaerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %100

	Halophily	Salt	Tested relation		Salt conc.
[Ref.: #29188]		NaCl		growth	1.0-7.0	%
[Ref.: #29188]		NaCl		optimum	3	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #29188]	acetate ChEBI	+	carbon source
[Ref.: #29188]	alanine ChEBI	+	carbon source
[Ref.: #29188]	arabinose ChEBI	+	carbon source
[Ref.: #29188]	aspartate ChEBI	+	carbon source
[Ref.: #29188]	cellobiose ChEBI	+	carbon source
[Ref.: #29188]	fructose ChEBI	+	carbon source
[Ref.: #29188]	galactose ChEBI	+	carbon source
[Ref.: #29188]	glucose ChEBI	+	carbon source
[Ref.: #29188]	glutamate ChEBI	+	carbon source
[Ref.: #29188]	lactose ChEBI	+	carbon source
[Ref.: #29188]	maltose ChEBI	+	carbon source
[Ref.: #29188]	mannitol ChEBI	+	carbon source
[Ref.: #29188]	mannose ChEBI	+	carbon source
[Ref.: #29188]	melibiose ChEBI	+	carbon source
[Ref.: #29188]	nitrate ChEBI	+	reduction
[Ref.: #29188]	pyruvate ChEBI	+	carbon source
[Ref.: #29188]	raffinose ChEBI	+	carbon source
[Ref.: #29188]	sorbitol ChEBI	+	carbon source
[Ref.: #29188]	sucrose ChEBI	+	carbon source
[Ref.: #29188]	trehalose ChEBI	+	carbon source
[Ref.: #29188]	xylose ChEBI	+	carbon source
	Only first 10 entries are displayed. Click here to see all.

	Enzymes	Enzyme	Enzyme activity
[Ref.: #29188]		gelatinase	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #16685]	Sample type/isolated from	seawater sample
[Ref.: #16685]	Geographic location (country and/or sea, region)	Tainan, An-Ping Harbour (shallow coastal region)
[Ref.: #16685]	Country	Taiwan, Province of China
[Ref.: #16685]	Country ISO 3 Code	TWN
[Ref.: #16685]	Continent	Asia

[Ref.: #67770]	Sample type/isolated from	Shallow coastal water from An-Ping Harbour
[Ref.: #67770]	Geographic location (country and/or sea, region)	Tainan
[Ref.: #67770]	Country	Taiwan, Province of China
[Ref.: #67770]	Country ISO 3 Code	TWN
[Ref.: #67770]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Environmental

#Aquatic

#Marine

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence FJ167390 (>99% sequence identity) for Aliagarivorans marinus from Microbeatlas

Aquatic Samples	183
Soil Samples	1
Animal Samples	47
Plant Samples
Total Samples	231

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #16685]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #16685]	Aliagarivorans marinus strain AAM1 16S ribosomal RNA gene, partial sequence	FJ167390	1461	GenBank ENA	561965 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Aliagarivorans marinus DSM 23064	GCA_000429485	scaffold	GenBank ENA	1120969 tax ID
[Ref.: #66792]	Aliagarivorans marinus DSM 23064	1120969.3	wgs	PATRIC	1120969 tax ID	*
[Ref.: #66792]	Aliagarivorans marinus DSM 23064	2523533543	draft	JGI IMG/M	1120969 tax ID	*

[Ref.: #16685]	GC-content	52.9 mol%
[Ref.: #67770]	GC-content	52.9 mol%	high performance liquid chromatography (HPLC)

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Aliagarivorans marinus DSM 23064 DSM 23064 NCBI: GCA_000429485.1
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	100	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Aliagarivorans marinus DSM 23064 PATRIC: 1120969.3
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	99.5	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	82.854	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.918	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	58.003	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	98.375	yes
[Ref.: #69480]	flagellated	motile2+ⓘ	yes	81.093	no

Availability in culture collections External links

[Ref.: #16685]

Culture collection no.

DSM 23064, BCRC 17888, JCM 15522, JCM 31907

[Ref.: #70177]

SI-ID 401158

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Aliagarivorans marinus gen. nov., sp. nov. and Aliagarivorans taiwanensis sp. nov., facultatively anaerobic marine bacteria capable of agar degradation.	Jean WD, Huang SP, Liu TY, Chen JS, Shieh WY	Int J Syst Evol Microbiol	10.1099/ijs.0.008235-0	2009	*

References

#16685

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23064

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#29188

Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #25612 (see below)

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#66793

Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 )

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#70177

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID401158.1 )

#25612

IJSEM 1880 2009 ( DOI 10.1099/ijs.0.008235-0 , PubMed 19567569 )

* These data were automatically processed and therefore are not curated

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Aliagarivorans marinus DSM 23064 DSM 23064

Aliagarivorans marinus DSM 23064

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