Name: Morganella psychrotolerans u2/3
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4989

Type strain:

Species: Morganella psychrotolerans

Strain Designation: u2/3

Culture col. no.: CCUG 53682, LMG 23374, DSM 17886, CIP 109403, JCM 16473

Strain history: LMG 23374 <-- J. Emborg U2/3.

NCBI tax ID(s): 368603 (species)

Section

Morganella psychrotolerans u2/3 is an aerobe, mesophilic bacterium that was isolated from cold smoked tuna.

aerobe
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Morganellaceae*
	Genus	*Morganella*
	Species	**Morganella psychrotolerans**
	Full Scientific Name (PNU)	Morganella psychrotolerans Emborg et al. 2006

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.918

[Ref.: #69480]	Motility	yes Confidence in %97.067

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7218]

Culture medium

TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)

[Ref.: #7218]

Culture medium growth

[Ref.: #7218]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #7218]

Culture medium composition

expand / minimize

[Ref.: #37546]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #37546]

Culture medium growth

[Ref.: #37546]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #7218]	growth	28 °C
[Ref.: #37546]	growth	30 °C
[Ref.: #59979]	growth	20-30 °C
[Ref.: #67770]	growth	25 °C

[Ref.: #7218]	Temperature range	mesophilic
[Ref.: #37546]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #59979]

Oxygen tolerance

aerobe

[Ref.: #69481]	Ability of spore formation	no Confidence in %100
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.253

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	-	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	-	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	+	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite
[Ref.: #68368]	acetoin ChEBI	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	* from API 20E
[Ref.: #68368]	indole ChEBI	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	-		* from API 20E
[Ref.: #68368]		indole ChEBI		+	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	-	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	-	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	+	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	+	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #7218]	14042	-	-	-	+	-	-	+	+	+	-	-	+	-	-	-	-	-	-	-	-	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7218]	Sample type/isolated from	cold smoked tuna
[Ref.: #7218]	Country	Denmark
[Ref.: #7218]	Country ISO 3 Code	DNK
[Ref.: #7218]	Continent	Europe

[Ref.: #59979]	Sample type/isolated from	Cold-smoked tuna,outbreak of histamine poisoning
[Ref.: #59979]	Sampling date	2004
[Ref.: #59979]	Geographic location (country and/or sea, region)	Copenhagen
[Ref.: #59979]	Country	Denmark
[Ref.: #59979]	Country ISO 3 Code	DNK
[Ref.: #59979]	Continent	Europe

[Ref.: #67770]	Sample type/isolated from	Cold-smoked tuna involved in an outbreak of histamine poisoning
[Ref.: #67770]	Country	Denmark
[Ref.: #67770]	Country ISO 3 Code	DNK
[Ref.: #67770]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Engineered	#Food production	-
#Host	#Fishes	-

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence DQ358135 (>99% sequence identity) for Morganella psychrotolerans subclade from Microbeatlas

Aquatic Samples	347
Soil Samples	147
Animal Samples	2120
Plant Samples	127
Total Samples	2741

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7218]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Morganella psychrotolerans strain U2/3 16S ribosomal RNA gene, partial sequence	DQ358135	1356	ENA	368603 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Morganella psychrotolerans strain GCSL-P101	368603.8	wgs	PATRIC	368603 tax ID	*
[Ref.: #66792]	Morganella psychrotolerans DSM 17886	2751185775	draft	JGI IMG/M	368603 tax ID	*
[Ref.: #66792]	Morganella psychrotolerans DSM 17886	GCA_001676155.1	contig	GenBank	368603 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Morganella psychrotolerans strain GCSL-P101 PATRIC: 368603.8
[Ref.: #69480]	spore-forming	no	99.253	no
[Ref.: #69480]	anaerobic	no	99.281	yes
[Ref.: #69480]	gram-positive	no	99.918	no
[Ref.: #69480]	thermophile	no	99.857	yes
[Ref.: #69480]	motile	yes	97.067	yes

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Morganella psychrotolerans strain GCSL-P101 PATRIC: 368603.8
[Ref.: #69481]	spore-forming	no	100	no

Availability in culture collections External links

[Ref.: #7218]

Culture collection no.

CCUG 53682, LMG 23374, DSM 17886, CIP 109403, JCM 16473

[Ref.: #20218]

Associated Passport(s) in StrainInfo

690156, 691225

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Morganella psychrotolerans sp. nov., a histamine-producing bacterium isolated from various seafoods.	Emborg J, Dalgaard P, Ahrens P	Int J Syst Evol Microbiol	10.1099/ijs.0.64357-0	2006	*

References

#7218

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17886

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37546 ; Curators of the CIP;
#59979 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 53682

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

* These data were automatically processed and therefore are not curated

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Morganella psychrotolerans strain GCSL-P101

Morganella psychrotolerans strain GCSL-P101

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Change proposal