Strain identifier

BacDive ID: 4989

Type strain: Yes

Species: Morganella psychrotolerans

Strain Designation: u2/3

Strain history: CIP <- 2006, DSMZ <- J. Emborg, Denmark Univ., Lyngby, Denmark: strain U2/3

NCBI tax ID(s): 368603 (species)

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General

@ref: 7218

BacDive-ID: 4989

DSM-Number: 17886

keywords: genome sequence, 16S sequence, Bacteria, aerobe, mesophilic, motile

description: Morganella psychrotolerans u2/3 is an aerobe, mesophilic, motile bacterium that was isolated from cold smoked tuna.

NCBI tax id

  • NCBI tax id: 368603
  • Matching level: species

strain history

@refhistory
7218<- J. Emborg; u2/3
67770LMG 23374 <-- J. Emborg U2/3.
122035CIP <- 2006, DSMZ <- J. Emborg, Denmark Univ., Lyngby, Denmark: strain U2/3

doi: 10.13145/bacdive4989.20230509.8.1

Name and taxonomic classification

LPSN

  • @ref: 20215
  • description: domain/bacteria
  • keyword: phylum/pseudomonadota
  • domain: Bacteria
  • phylum: Pseudomonadota
  • class: Gammaproteobacteria
  • order: Enterobacterales
  • family: Morganellaceae
  • genus: Morganella
  • species: Morganella psychrotolerans
  • full scientific name: Morganella psychrotolerans Emborg et al. 2006

@ref: 7218

domain: Bacteria

phylum: Proteobacteria

class: Gammaproteobacteria

order: Enterobacteriales, not validated

family: Morganellaceae

genus: Morganella

species: Morganella psychrotolerans

full scientific name: Morganella psychrotolerans Emborg et al. 2006

strain designation: u2/3

type strain: yes

Morphology

cell morphology

@refmotilityconfidencegram staincell shape
69480yes97.067
6948099.918negative
122035yesnegativerod-shaped

Culture and growth conditions

culture medium

@refnamegrowthlinkcomposition
7218TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535)yeshttps://mediadive.dsmz.de/medium/535Name: TRYPTICASE SOY BROTH AGAR (DSMZ Medium 535) Composition: Trypticase soy broth 30.0 g/l Agar 15.0 g/l Distilled water
37546MEDIUM 72- for trypto casein soja agaryesDistilled water make up to (1000.000 ml);Trypto casein soy agar (40.000 g)
122035CIP Medium 72yeshttps://catalogue-crbip.pasteur.fr/fiche_milieu.xhtml?crbip=72

culture temp

@refgrowthtypetemperaturerange
7218positivegrowth28mesophilic
37546positivegrowth30mesophilic
59979positivegrowth20-30
67770positivegrowth25mesophilic

Physiology and metabolism

oxygen tolerance

@refoxygen tolerance
59979aerobe
122035facultative anaerobe

spore formation

@refspore formationconfidence
69481no100
69480no99.253

metabolite utilization

@refmetaboliteutilization activitykind of utilization testedChebi-ID
68371Potassium 5-ketogluconate-builds acid from
68371Potassium 2-ketogluconate-builds acid from
68371gluconate+builds acid from24265
68371L-arabitol-builds acid from18403
68371D-arabitol-builds acid from18333
68371L-fucose-builds acid from18287
68371D-fucose-builds acid from28847
68371D-tagatose-builds acid from16443
68371turanose-builds acid from32528
68371gentiobiose-builds acid from28066
68371xylitol+builds acid from17151
68371glycogen-builds acid from28087
68371starch-builds acid from28017
68371raffinose-builds acid from16634
68371melezitose-builds acid from6731
68371inulin-builds acid from15443
68371trehalose-builds acid from27082
68371sucrose-builds acid from17992
68371melibiose-builds acid from28053
68371lactose-builds acid from17716
68371maltose-builds acid from17306
68371cellobiose-builds acid from17057
68371salicin-builds acid from17814
68371esculin-builds acid from4853
68371arbutin-builds acid from18305
68371amygdalin-builds acid from27613
68371N-acetylglucosamine+builds acid from59640
68371methyl alpha-D-glucopyranoside-builds acid from320061
68371methyl alpha-D-mannoside-builds acid from43943
68371D-sorbitol-builds acid from17924
68371D-mannitol-builds acid from16899
68371myo-inositol-builds acid from17268
68371galactitol-builds acid from16813
68371L-rhamnose-builds acid from62345
68371L-sorbose-builds acid from17266
68371D-mannose+builds acid from16024
68371D-fructose+builds acid from15824
68371D-glucose+builds acid from17634
68371D-galactose-builds acid from12936
68371methyl beta-D-xylopyranoside-builds acid from74863
68371ribitol-builds acid from15963
68371L-xylose-builds acid from65328
68371D-xylose-builds acid from65327
68371D-ribose+builds acid from16988
68371L-arabinose-builds acid from30849
68371D-arabinose-builds acid from17108
68371erythritol-builds acid from17113
68371glycerol-builds acid from17754
68368L-arabinose-fermentation30849
68368amygdalin-fermentation27613
68368melibiose-fermentation28053
68368sucrose-fermentation17992
68368L-rhamnose-fermentation62345
68368sorbitol-fermentation30911
68368myo-inositol-fermentation17268
68368D-mannitol-fermentation16899
68368D-glucose+fermentation17634
68368gelatin-hydrolysis5291
68368tryptophan+energy source27897
68368urea+hydrolysis16199
68368citrate-assimilation16947
68368ornithine+degradation18257
68368lysine-degradation25094
68368arginine-hydrolysis29016
122035nitrate+reduction17632
122035nitrite-reduction16301

metabolite production

@refChebi-IDmetaboliteproduction
6836815688acetoinno
6836835581indoleyes
6836816136hydrogen sulfideno
12203535581indoleyes

metabolite tests

@refChebi-IDmetabolitevoges-proskauer-testindole test
6836815688acetoin-
6836835581indole+

enzymes

@refvalueactivityec
68382alpha-fucosidase-3.2.1.51
68382alpha-mannosidase-3.2.1.24
68382N-acetyl-beta-glucosaminidase-3.2.1.52
68382beta-glucosidase-3.2.1.21
68382alpha-glucosidase-3.2.1.20
68382beta-glucuronidase-3.2.1.31
68382beta-galactosidase-3.2.1.23
68382alpha-galactosidase-3.2.1.22
68382naphthol-AS-BI-phosphohydrolase+
68382acid phosphatase+3.1.3.2
68382alpha-chymotrypsin-3.4.21.1
68382trypsin-3.4.21.4
68382cystine arylamidase-3.4.11.3
68382valine arylamidase-
68382leucine arylamidase+3.4.11.1
68382lipase (C 14)-
68382esterase lipase (C 8)-
68382esterase (C 4)+
68382alkaline phosphatase+3.1.3.1
68368cytochrome oxidase-1.9.3.1
68368gelatinase-
68368tryptophan deaminase+4.1.99.1
68368urease+3.5.1.5
68368ornithine decarboxylase+4.1.1.17
68368lysine decarboxylase-4.1.1.18
68368arginine dihydrolase-3.5.3.6
68368beta-galactosidase-3.2.1.23
122035oxidase-
122035catalase+1.11.1.6
122035urease+3.5.1.5

API zym

@refControlAlkaline phosphataseEsteraseEsterase LipaseLipaseLeucine arylamidaseValine arylamidaseCystine arylamidaseTrypsinalpha- ChymotrypsinAcid phosphataseNaphthol-AS-BI-phosphohydrolasealpha- Galactosidasebeta- Galactosidasebeta- Glucuronidasealpha- Glucosidasebeta- GlucosidaseN-acetyl-beta- glucosaminidasealpha- Mannosidasealpha- Fucosidase
122035-++--+----++--------

API 20E

@refONPGADH ArgLDC LysODCCITH2SURETDA TrpINDVPGELGLUMANINOSorRHASACMELAMYARAOX
7218---+--+++--+---------

API 50CHac

@refGLYERYDARALARARIBDXYLLXYLADOMDXGALGLUFRUMNESBERHADULINOMANSORMDMMDGNAGAMYARBESCSALCELMALLACMELSACTREINUMLZRAFAMDGLYGXLTGENTURLYXTAGDFUCLFUCDARLLARLGNT2KG5KG
122035----+-----+++--------+---------------+--+/------+--

Isolation, sampling and environmental information

isolation

@refsample typecountryorigin.countrycontinentsampling dategeographic location
7218cold smoked tunaDenmarkDNKEurope
59979Cold-smoked tuna,outbreak of histamine poisoningDenmarkDNKEurope2004Copenhagen
67770Cold-smoked tuna involved in an outbreak of histamine poisoningDenmarkDNKEurope
122035Cold smoked tunaDenmarkDNKEurope

isolation source categories

Cat1Cat2
#Engineered#Food production
#Host#Fishes

taxonmaps

  • @ref: 69479
  • File name: preview.99_8003.png
  • url: https://microbeatlas.org/index.html?action=taxon&taxon_id=90_6;96_168;97_181;98_5837;99_8003&stattab=map
  • Last taxonomy: Morganella psychrotolerans subclade
  • 16S sequence: DQ358135
  • Sequence Identity:
  • Total samples: 2741
  • soil counts: 147
  • aquatic counts: 347
  • animal counts: 2120
  • plant counts: 127

Safety information

risk assessment

@refbiosafety levelbiosafety level comment
72181Risk group (German classification)
1220351Risk group (French classification)

Sequence information

16S sequences

  • @ref: 20218
  • description: Morganella psychrotolerans strain U2/3 16S ribosomal RNA gene, partial sequence
  • accession: DQ358135
  • length: 1356
  • database: ena
  • NCBI tax ID: 368603

Genome sequences

@refdescriptionaccessionassembly leveldatabaseNCBI tax ID
66792Morganella psychrotolerans strain GCSL-P101368603.8wgspatric368603
66792Morganella psychrotolerans DSM 178862751185775draftimg368603
66792Morganella psychrotolerans DSM 17886GCA_001676155contigncbi368603

Genome-based predictions

predictions

traitpredictionconfidencetraining_data
spore-formingno100no
gram-positiveno97.967no
anaerobicno96.734yes
halophileno86.502no
spore-formingno97.092no
glucose-utilyes87.563no
aerobicyes86.609yes
motileyes88.231no
flagellatedyes56.183no
thermophileno99.549no
glucose-fermentyes85.453yes

External links

@ref: 7218

culture collection no.: CCUG 53682, LMG 23374, DSM 17886, CIP 109403, JCM 16473

straininfo link

  • @ref: 74484
  • straininfo: 289500

literature

  • topic: Phylogeny
  • Pubmed-ID: 17012582
  • title: Morganella psychrotolerans sp. nov., a histamine-producing bacterium isolated from various seafoods.
  • authors: Emborg J, Dalgaard P, Ahrens P
  • journal: Int J Syst Evol Microbiol
  • DOI: 10.1099/ijs.0.64357-0
  • year: 2006
  • mesh: Animals, Bacterial Proteins/genetics, Cold Temperature, Fishes/*microbiology, Galactose/metabolism, Genes, rRNA, Histamine/*biosynthesis, Humans, Molecular Sequence Data, Morganella/*classification/genetics/growth & development/isolation & purification, Nucleic Acid Hybridization, Phylogeny, RNA, Ribosomal, 16S, Seafood/*microbiology, Sequence Analysis, DNA, Sodium Chloride/metabolism, Tuna/*microbiology
  • topic2: Metabolism

Reference

@idauthorscataloguedoi/urltitlejournalpubmed
7218Curators of the DSMZLeibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH (DSM 17886)https://www.dsmz.de/collection/catalogue/details/culture/DSM-17886
20215Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.10.1099/ijsem.0.004332List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ
20218Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.10.1016/j.syapm.2013.11.002StrainInfo introduces electronic passports for microorganisms.Syst Appl Microbiol. 37: 42-50 201424321274
37546Curators of the CIPhttps://brclims.pasteur.fr/brcWeb/souche/detail/1/7141
59979Curators of the CCUGCulture Collection University of Gothenburg (CCUG) (CCUG 53682)https://www.ccug.se/strain?id=53682
66792Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesAutomatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
67770Curators of the JCMhttps://jcm.brc.riken.jp/en/
68368Automatically annotated from API 20E
68371Automatically annotated from API 50CH acid
68382Automatically annotated from API zym
69479João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.https://microbeatlas.org/MicrobeAtlas 1.0 beta
69480Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmannhttps://diaspora-project.de/progress.html#genomesPredictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information)
69481Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch10.21203/rs.3.rs-2527258/v1Predictions based on the model GenomeNet Sporulation v. 1
74484Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.10.60712/SI-ID289500.1StrainInfo: A central database for resolving microbial strain identifiers
122035Curators of the CIPCollection of Institut Pasteur (CIP 109403)https://catalogue-crbip.pasteur.fr/fiche_catalogue.xhtml?crbip=CIP%20109403