Leminorella grimontii 81H-380 is a bacterium that was isolated from stool of seven month old female with gastroenteritis.
genome sequence 16S sequence Bacteria| @ref 20215 |
|
|
| Domain Bacteria |
| Phylum Pseudomonadota |
| Class Gammaproteobacteria |
| Order Enterobacterales |
| Family Budviciaceae |
| Genus Leminorella |
| Species Leminorella grimontii |
| Full scientific name Leminorella grimontii Hickman-Brenner et al. 1985 |
| BacDive ID | Other strains from Leminorella grimontii (3) | Type strain |
|---|---|---|
| 143669 | L. grimontii CCUG 20909 B, ATCC 43005 | |
| 165319 | L. grimontii JCM 5900, ATCC 43006, CDC 3257-76 | |
| 165320 | L. grimontii JCM 5901, ATCC 43007, CDC 3595-77 |
| @ref: | 66793 |
| multimedia content: | EM_DSM_5078_1.jpg |
| multimedia.multimedia content: | EM_DSM_5078_1.jpg |
| caption: | electron microscopic image |
| intellectual property rights: | © HZI/Manfred Rohde |
| manual_annotation: | 1 |
| @ref: | 66793 |
| multimedia content: | EM_DSM_5078_2.jpg |
| multimedia.multimedia content: | EM_DSM_5078_2.jpg |
| caption: | electron microscopic image |
| intellectual property rights: | © HZI/Manfred Rohde |
| manual_annotation: | 1 |
| @ref: | 66793 |
| multimedia content: | EM_DSM_5078_3.jpg |
| multimedia.multimedia content: | EM_DSM_5078_3.jpg |
| caption: | electron microscopic image |
| intellectual property rights: | © HZI/Manfred Rohde |
| manual_annotation: | 1 |
| @ref: | 66793 |
| multimedia content: | EM_DSM_5078_4.jpg |
| multimedia.multimedia content: | EM_DSM_5078_4.jpg |
| caption: | electron microscopic image |
| intellectual property rights: | © HZI/Manfred Rohde |
| manual_annotation: | 1 |
| @ref | Name | Growth | Medium link | Composition | |
|---|---|---|---|---|---|
| 1925 | NUTRIENT AGAR (DSMZ Medium 1) | Medium recipe at MediaDive | Name: NUTRIENT AGAR (DSMZ Medium 1) Composition: Agar 15.0 g/l Peptone 5.0 g/l Meat extract 3.0 g/l Distilled water | ||
| 34021 | MEDIUM 3 - Columbia agar | Columbia agar (39.000 g);distilled water (1000.000 ml) | |||
| 119743 | CIP Medium 3 | Medium recipe at CIP |
| @ref | Chebi-ID | Metabolite | Utilization activity | Kind of utilization tested | |
|---|---|---|---|---|---|
| 68374 | 29016 ChEBI | arginine | - | hydrolysis | from API ID32E |
| 68374 | 17057 ChEBI | cellobiose | - | builds acid from | from API ID32E |
| 68374 | 18333 ChEBI | D-arabitol | - | builds acid from | from API ID32E |
| 68374 | 18024 ChEBI | D-galacturonic acid | - | builds acid from | from API ID32E |
| 68374 | 17634 ChEBI | D-glucose | + | builds acid from | from API ID32E |
| 68374 | 16899 ChEBI | D-mannitol | - | builds acid from | from API ID32E |
| 68374 | 30849 ChEBI | L-arabinose | + | builds acid from | from API ID32E |
| 68374 | 18403 ChEBI | L-arabitol | - | builds acid from | from API ID32E |
| 68374 | 62345 ChEBI | L-rhamnose | - | builds acid from | from API ID32E |
| 68374 | 25094 ChEBI | lysine | - | degradation | from API ID32E |
| 68374 | 15792 ChEBI | malonate | - | assimilation | from API ID32E |
| 68374 | 17306 ChEBI | maltose | - | builds acid from | from API ID32E |
| 68374 | 17268 ChEBI | myo-inositol | - | builds acid from | from API ID32E |
| 68374 | 18257 ChEBI | ornithine | - | degradation | from API ID32E |
| 68374 | 18394 ChEBI | palatinose | - | builds acid from | from API ID32E |
| 68374 | Potassium 5-ketogluconate | - | builds acid from | from API ID32E | |
| 68374 | 15963 ChEBI | ribitol | - | builds acid from | from API ID32E |
| 68374 | 30911 ChEBI | sorbitol | - | builds acid from | from API ID32E |
| 68374 | 17992 ChEBI | sucrose | - | builds acid from | from API ID32E |
| 68374 | 27082 ChEBI | trehalose | - | builds acid from | from API ID32E |
| 68374 | 27897 ChEBI | tryptophan | - | energy source | from API ID32E |
| 68374 | 16199 ChEBI | urea | - | hydrolysis | from API ID32E |
| @ref | Value | Activity | Ec | |
|---|---|---|---|---|
| 68374 | alpha-galactosidase | - | 3.2.1.22 | from API ID32E |
| 68374 | alpha-glucosidase | - | 3.2.1.20 | from API ID32E |
| 68374 | alpha-maltosidase | - | from API ID32E | |
| 68374 | arginine dihydrolase | - | 3.5.3.6 | from API ID32E |
| 68374 | beta-galactosidase | - | 3.2.1.23 | from API ID32E |
| 68374 | beta-glucosidase | - | 3.2.1.21 | from API ID32E |
| 68374 | beta-glucuronidase | - | 3.2.1.31 | from API ID32E |
| 68374 | L-aspartate arylamidase | - | 3.4.11.21 | from API ID32E |
| 68374 | lipase | - | from API ID32E | |
| 68374 | lysine decarboxylase | - | 4.1.1.18 | from API ID32E |
| 68374 | N-acetyl-beta-glucosaminidase | + | 3.2.1.52 | from API ID32E |
| 68374 | ornithine decarboxylase | - | 4.1.1.17 | from API ID32E |
| 68374 | urease | - | 3.5.1.5 | from API ID32E |
| @ref | pathway | enzyme coverage | annotated reactions | external links | |
|---|---|---|---|---|---|
| 66794 | CDP-diacylglycerol biosynthesis | 100 | 2 of 2 | ||
| 66794 | methylglyoxal degradation | 100 | 5 of 5 | ||
| 66794 | vitamin K metabolism | 100 | 5 of 5 | ||
| 66794 | 6-hydroxymethyl-dihydropterin diphosphate biosynthesis | 100 | 8 of 8 | ||
| 66794 | anapleurotic synthesis of oxalacetate | 100 | 1 of 1 | ||
| 66794 | ketogluconate metabolism | 100 | 8 of 8 | ||
| 66794 | vitamin B6 metabolism | 100 | 11 of 11 | ||
| 66794 | suberin monomers biosynthesis | 100 | 2 of 2 | ||
| 66794 | adipate degradation | 100 | 2 of 2 | ||
| 66794 | lipoate biosynthesis | 100 | 5 of 5 | ||
| 66794 | UDP-GlcNAc biosynthesis | 100 | 3 of 3 | ||
| 66794 | L-lactaldehyde degradation | 100 | 3 of 3 | ||
| 66794 | coenzyme A metabolism | 100 | 4 of 4 | ||
| 66794 | reductive acetyl coenzyme A pathway | 100 | 7 of 7 | ||
| 66794 | gluconeogenesis | 100 | 8 of 8 | ||
| 66794 | palmitate biosynthesis | 100 | 22 of 22 | ||
| 66794 | cis-vaccenate biosynthesis | 100 | 2 of 2 | ||
| 66794 | formaldehyde oxidation | 100 | 3 of 3 | ||
| 66794 | pentose phosphate pathway | 100 | 11 of 11 | ||
| 66794 | folate polyglutamylation | 100 | 1 of 1 | ||
| 66794 | ppGpp biosynthesis | 100 | 4 of 4 | ||
| 66794 | ribulose monophosphate pathway | 100 | 2 of 2 | ||
| 66794 | ubiquinone biosynthesis | 100 | 7 of 7 | ||
| 66794 | Entner Doudoroff pathway | 100 | 10 of 10 | ||
| 66794 | photosynthesis | 92.86 | 13 of 14 | ||
| 66794 | threonine metabolism | 90 | 9 of 10 | ||
| 66794 | lipid A biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | chorismate metabolism | 88.89 | 8 of 9 | ||
| 66794 | valine metabolism | 88.89 | 8 of 9 | ||
| 66794 | molybdenum cofactor biosynthesis | 88.89 | 8 of 9 | ||
| 66794 | NAD metabolism | 88.89 | 16 of 18 | ||
| 66794 | C4 and CAM-carbon fixation | 87.5 | 7 of 8 | ||
| 66794 | heme metabolism | 85.71 | 12 of 14 | ||
| 66794 | citric acid cycle | 85.71 | 12 of 14 | ||
| 66794 | vitamin B1 metabolism | 84.62 | 11 of 13 | ||
| 66794 | purine metabolism | 84.04 | 79 of 94 | ||
| 66794 | selenocysteine biosynthesis | 83.33 | 5 of 6 | ||
| 66794 | cellulose degradation | 80 | 4 of 5 | ||
| 66794 | starch degradation | 80 | 8 of 10 | ||
| 66794 | pyrimidine metabolism | 80 | 36 of 45 | ||
| 66794 | peptidoglycan biosynthesis | 80 | 12 of 15 | ||
| 66794 | gallate degradation | 80 | 4 of 5 | ||
| 66794 | tetrahydrofolate metabolism | 78.57 | 11 of 14 | ||
| 66794 | aspartate and asparagine metabolism | 77.78 | 7 of 9 | ||
| 66794 | serine metabolism | 77.78 | 7 of 9 | ||
| 66794 | phenylalanine metabolism | 76.92 | 10 of 13 | ||
| 66794 | sulfopterin metabolism | 75 | 3 of 4 | ||
| 66794 | glycogen biosynthesis | 75 | 3 of 4 | ||
| 66794 | isoleucine metabolism | 75 | 6 of 8 | ||
| 66794 | acetate fermentation | 75 | 3 of 4 | ||
| 66794 | CMP-KDO biosynthesis | 75 | 3 of 4 | ||
| 66794 | butanoate fermentation | 75 | 3 of 4 | ||
| 66794 | biotin biosynthesis | 75 | 3 of 4 | ||
| 66794 | flavin biosynthesis | 73.33 | 11 of 15 | ||
| 66794 | alanine metabolism | 72.41 | 21 of 29 | ||
| 66794 | degradation of sugar acids | 72 | 18 of 25 | ||
| 66794 | glutamate and glutamine metabolism | 71.43 | 20 of 28 | ||
| 66794 | cardiolipin biosynthesis | 71.43 | 5 of 7 | ||
| 66794 | propanol degradation | 71.43 | 5 of 7 | ||
| 66794 | degradation of pentoses | 71.43 | 20 of 28 | ||
| 66794 | glutathione metabolism | 71.43 | 10 of 14 | ||
| 66794 | glycolysis | 70.59 | 12 of 17 | ||
| 66794 | degradation of sugar alcohols | 68.75 | 11 of 16 | ||
| 66794 | d-mannose degradation | 66.67 | 6 of 9 | ||
| 66794 | glycolate and glyoxylate degradation | 66.67 | 4 of 6 | ||
| 66794 | octane oxidation | 66.67 | 2 of 3 | ||
| 66794 | CO2 fixation in Crenarchaeota | 66.67 | 6 of 9 | ||
| 66794 | cyanate degradation | 66.67 | 2 of 3 | ||
| 66794 | acetoin degradation | 66.67 | 2 of 3 | ||
| 66794 | enterobactin biosynthesis | 66.67 | 2 of 3 | ||
| 66794 | oxidative phosphorylation | 65.93 | 60 of 91 | ||
| 66794 | isoprenoid biosynthesis | 65.38 | 17 of 26 | ||
| 66794 | proline metabolism | 63.64 | 7 of 11 | ||
| 66794 | histidine metabolism | 62.07 | 18 of 29 | ||
| 66794 | lipid metabolism | 61.29 | 19 of 31 | ||
| 66794 | cysteine metabolism | 61.11 | 11 of 18 | ||
| 66794 | degradation of hexoses | 61.11 | 11 of 18 | ||
| 66794 | glycogen metabolism | 60 | 3 of 5 | ||
| 66794 | factor 420 biosynthesis | 60 | 3 of 5 | ||
| 66794 | metabolism of amino sugars and derivatives | 60 | 3 of 5 | ||
| 66794 | hydrogen production | 60 | 3 of 5 | ||
| 66794 | non-pathway related | 57.89 | 22 of 38 | ||
| 66794 | methionine metabolism | 57.69 | 15 of 26 | ||
| 66794 | tyrosine metabolism | 57.14 | 8 of 14 | ||
| 66794 | lysine metabolism | 57.14 | 24 of 42 | ||
| 66794 | ascorbate metabolism | 54.55 | 12 of 22 | ||
| 66794 | leucine metabolism | 53.85 | 7 of 13 | ||
| 66794 | sulfate reduction | 53.85 | 7 of 13 | ||
| 66794 | tryptophan metabolism | 50 | 19 of 38 | ||
| 66794 | carnitine metabolism | 50 | 4 of 8 | ||
| 66794 | arginine metabolism | 50 | 12 of 24 | ||
| 66794 | coenzyme M biosynthesis | 50 | 5 of 10 | ||
| 66794 | propionate fermentation | 50 | 5 of 10 | ||
| 66794 | dTDPLrhamnose biosynthesis | 50 | 4 of 8 | ||
| 66794 | pantothenate biosynthesis | 50 | 3 of 6 | ||
| 66794 | 4-hydroxyphenylacetate degradation | 50 | 5 of 10 | ||
| 66794 | lactate fermentation | 50 | 2 of 4 | ||
| 66794 | aminopropanol phosphate biosynthesis | 50 | 1 of 2 | ||
| 66794 | degradation of aromatic, nitrogen containing compounds | 50 | 6 of 12 | ||
| 66794 | quinate degradation | 50 | 1 of 2 | ||
| 66794 | ethanol fermentation | 50 | 1 of 2 | ||
| 66794 | urea cycle | 46.15 | 6 of 13 | ||
| 66794 | metabolism of disaccharids | 45.45 | 5 of 11 | ||
| 66794 | phenol degradation | 45 | 9 of 20 | ||
| 66794 | nitrate assimilation | 44.44 | 4 of 9 | ||
| 66794 | 4-hydroxymandelate degradation | 44.44 | 4 of 9 | ||
| 66794 | allantoin degradation | 44.44 | 4 of 9 | ||
| 66794 | daunorubicin biosynthesis | 44.44 | 4 of 9 | ||
| 66794 | glycine betaine biosynthesis | 40 | 2 of 5 | ||
| 66794 | 3-phenylpropionate degradation | 40 | 6 of 15 | ||
| 66794 | ethylmalonyl-CoA pathway | 40 | 2 of 5 | ||
| 66794 | arachidonate biosynthesis | 40 | 2 of 5 | ||
| 66794 | glycine metabolism | 40 | 4 of 10 | ||
| 66794 | androgen and estrogen metabolism | 37.5 | 6 of 16 | ||
| 66794 | d-xylose degradation | 36.36 | 4 of 11 | ||
| 66794 | acetyl CoA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | sphingosine metabolism | 33.33 | 2 of 6 | ||
| 66794 | sulfoquinovose degradation | 33.33 | 1 of 3 | ||
| 66794 | IAA biosynthesis | 33.33 | 1 of 3 | ||
| 66794 | vitamin B12 metabolism | 32.35 | 11 of 34 | ||
| 66794 | phosphatidylethanolamine bioynthesis | 30.77 | 4 of 13 | ||
| 66794 | phenylpropanoid biosynthesis | 30.77 | 4 of 13 | ||
| 66794 | polyamine pathway | 30.43 | 7 of 23 | ||
| 66794 | benzoyl-CoA degradation | 28.57 | 2 of 7 | ||
| 66794 | aclacinomycin biosynthesis | 28.57 | 2 of 7 | ||
| 66794 | dolichyl-diphosphooligosaccharide biosynthesis | 27.27 | 3 of 11 | ||
| 66794 | toluene degradation | 25 | 1 of 4 | ||
| 66794 | alginate biosynthesis | 25 | 1 of 4 | ||
| 66794 | cyclohexanol degradation | 25 | 1 of 4 | ||
| 66794 | arachidonic acid metabolism | 22.22 | 4 of 18 |
| @ref | ODC | ADH (Arg) | LDC (Lys) | URE | LARL | GAT | 5KG | LipaseLIP | Phenol red (Acidification)RP | beta GLU | MAN | MAL | ADO | PLE | beta GUR | MNT | IND | N-Acetyl-beta-Glucosaminidasebeta NAG | beta GAL | GLU | SAC | LARA | DARL | alpha GLU | alpha GAL | TRE | RHA | INO | CEL | SOR | alpha-MaltosidasealphaMAL | L-aspartic acid arylamidaseAspA | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 47223 | - | - | - | - | - | - | - | - | + | - | - | - | - | - | - | - | - | + | - | + | - | + | - | - | - | - | - | - | - | - | - | - |
| @ref | Description | Assembly level | INSDC accession | BV-BRC accession | IMG accession | NCBI tax ID | Score | |
|---|---|---|---|---|---|---|---|---|
| 66792 | ASM2434355v1 assembly for Leminorella grimontii JCM 5902 | contig | 82981 | 70.69 | ||||
| 67770 | 30316_B01 assembly for Leminorella grimontii NCTC12152 | contig | 82981 | 65.22 | ||||
| 67770 | ASM43908v1 assembly for Leminorella grimontii ATCC 33999 = DSM 5078 | scaffold | 1005999 | 64.55 | ||||
| 67770 | GLGR_DRAFTv1 assembly for Leminorella grimontii ATCC 33999 = DSM 5078 | contig | 1005999 | 61 |
| @ref | Description | Accession | Length | Database | NCBI tax ID | |
|---|---|---|---|---|---|---|
| 20218 | Leminorella grimontii 16S rRNA gene (strain DSM 5078) | AJ233421 | 1482 | 1005999 |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125439 | oxygen_tolerance | BacteriaNetⓘ | aerobe | 75.50 | no |
| 125439 | gram_stain | BacteriaNetⓘ | negative | 99.70 | no |
| 125439 | motility | BacteriaNetⓘ | yes | 87.80 | no |
| 125439 | spore_formation | BacteriaNetⓘ | no | 99.60 | no |
| @ref | Trait | Model | Prediction | Confidence in % | In training data |
|---|---|---|---|---|---|
| 125438 | gram-positive | gram-positiveⓘ | no | 99.50 | no |
| 125438 | anaerobic | anaerobicⓘ | no | 89.65 | no |
| 125438 | spore-forming | spore-formingⓘ | no | 92.75 | no |
| 125438 | aerobic | aerobicⓘ | no | 67.73 | no |
| 125438 | thermophilic | thermophileⓘ | no | 99.00 | yes |
| 125438 | flagellated | motile2+ⓘ | no | 50.20 | no |
| Topic | Title | Authors | Journal | DOI | Year | |
|---|---|---|---|---|---|---|
| Genetics | Genomic insights into Leminorella grimontii and its chromosomal class A GRI beta-lactamase. | Aldeia C, Campos-Madueno EI, Endimiani A. | Eur J Clin Microbiol Infect Dis | 10.1007/s10096-024-04888-7 | 2024 | |
| Genome-Wide Mapping of the Escherichia coli PhoB Regulon Reveals Many Transcriptionally Inert, Intragenic Binding Sites. | Fitzgerald DM, Stringer AM, Smith C, Lapierre P, Wade JT. | mBio | 10.1128/mbio.02535-22 | 2023 | ||
| Plesiomonas shigelloides, an Atypical Enterobacterales with a Vibrio-Related Secondary Chromosome. | Adam Y, Brezellec P, Espinosa E, Besombes A, Naquin D, Paly E, Possoz C, van Dijk E, Barre FX, Ferat JL. | Genome Biol Evol | 10.1093/gbe/evac011 | 2022 | ||
| Transcriptome | Investigating the Campylobacter jejuni Transcriptional Response to Host Intestinal Extracts Reveals the Involvement of a Widely Conserved Iron Uptake System. | Liu MM, Boinett CJ, Chan ACK, Parkhill J, Murphy MEP, Gaynor EC. | mBio | 10.1128/mbio.01347-18 | 2018 | |
| Enzymology | Multiplex detection of nine food-borne pathogens by mPCR and capillary electrophoresis after using a universal pre-enrichment medium. | Villamizar-Rodriguez G, Fernandez J, Marin L, Muniz J, Gonzalez I, Lombo F. | Front Microbiol | 10.3389/fmicb.2015.01194 | 2015 | |
| Phylogeny | Comparative genomic analysis of the secondary flagellar (flag-2) system in the order Enterobacterales. | De Maayer P, Pillay T, Coutinho TA. | BMC Genomics | 10.1186/s12864-020-6529-9 | 2020 | |
| Enzymology | Phosphatase activity is a constant feature of all isolates of all major species of the family Enterobacteriaceae. | Satta G, Pompei R, Grazi G, Cornaglia G. | J Clin Microbiol | 10.1128/jcm.26.12.2637-2641.1988 | 1988 | |
| Structural basis of a GatC ortholog transporter in the bacterial phosphotransferase system. | Takahashi YS, Kohga H, Chek MF, Yamamoto K, Takahashi JF, Shigematsu H, Tanaka Y, Ichikawa M, Miyazaki R, Hakoshima T, Tsukazaki T. | FEBS Lett | 10.1002/1873-3468.70135 | 2025 | ||
| Typhoid fever: the challenging diagnosis of a pseudo-outbreak in Benguet, Philippines. | Guzman JMC, Ventura RJC, Blanco MZC, Lonogan KB, Magpantay RL. | Western Pac Surveill Response J | 10.5365/wpsar.2024.15.3.1047 | 2024 | ||
| Enzymology | Characterisation of a Bacterial Galactokinase with High Activity and Broad Substrate Tolerance for Chemoenzymatic Synthesis of 6-Aminogalactose-1-Phosphate and Analogues. | Huang K, Parmeggiani F, Pallister E, Huang CJ, Liu FF, Li Q, Birmingham WR, Both P, Thomas B, Liu L, Voglmeir J, Flitsch SL. | Chembiochem | 10.1002/cbic.201700477 | 2018 | |
| Pathogenicity | Autotoxins in continuous tobacco cropping soils and their management. | Chen Y, Yang L, Zhang L, Li J, Zheng Y, Yang W, Deng L, Gao Q, Mi Q, Li X, Zeng W, Ding X, Xiang H. | Front Plant Sci | 10.3389/fpls.2023.1106033 | 2023 | |
| Leminorella sepsis in very low birth weight neonate as cause of neonatal mortality. | Sharma D, Patel A, Soni P, Shastri S, Singh R. | J Matern Fetal Neonatal Med | 10.1080/14767058.2016.1199678 | 2017 | ||
| Enzymology | Expression of ESBL-like activity in infrequently encountered members of the family Enterobacteriaceae. | Abbott SL, Lidgard JA, Cheung WK, Obeso MN, Berrada ZL, Janda JM. | Curr Microbiol | 10.1007/s00284-011-0057-4 | 2012 | |
| Enzymology | Spontaneous peritonitis caused by Leminorella grimontii. | Dalamaga M, Karmaniolas K, Pantelaki M, Daskalopoulou K, Kavatha D, Migdalis I. | Diagn Microbiol Infect Dis | 10.1016/j.diagmicrobio.2006.03.006 | 2006 | |
| Phylogeny | Free-Living Enterobacterium Pragia fontium 24613: Complete Genome Sequence and Metabolic Profiling. | Snopkova K, Sedlar K, Bosak J, Chaloupkova E, Sedlacek I, Provaznik I, Smajs D. | Evol Bioinform Online | 10.1177/1176934317700863 | 2017 | |
| Genetics | Horizontal Gene Transfer Clarifies Taxonomic Confusion and Promotes the Genetic Diversity and Pathogenicity of Plesiomonas shigelloides. | Yin Z, Zhang S, Wei Y, Wang M, Ma S, Yang S, Wang J, Yuan C, Jiang L, Du Y. | mSystems | 10.1128/msystems.00448-20 | 2020 | |
| Pathogenicity | Comparison of disk diffusion, VITEK 2, and broth microdilution antimicrobial susceptibility test results for unusual species of Enterobacteriaceae. | Stone ND, O'Hara CM, Williams PP, McGowan JE, Tenover FC. | J Clin Microbiol | 10.1128/jcm.01782-06 | 2007 | |
| Phylogeny | Bacterial diversity analysis of larvae and adult midgut microflora using culture-dependent and culture-independent methods in lab-reared and field-collected Anopheles stephensi-an Asian malarial vector. | Rani A, Sharma A, Rajagopal R, Adak T, Bhatnagar RK. | BMC Microbiol | 10.1186/1471-2180-9-96 | 2009 | |
| Metabolism | Entner-Doudoroff pathway for sulfoquinovose degradation in Pseudomonas putida SQ1. | Felux AK, Spiteller D, Klebensberger J, Schleheck D. | Proc Natl Acad Sci U S A | 10.1073/pnas.1507049112 | 2015 | |
| Phylogeny | Leminorella, a new genus of Enterobacteriaceae: identification of Leminorella grimontii sp. nov. and Leminorella richardii sp. nov. found in clinical specimens. | Hickman-Brenner FW, Vohra MP, Huntley-Carter GP, Fanning GR, Lowery VA 3rd, Brenner DJ, Farmer JJ 3rd | J Clin Microbiol | 10.1128/jcm.21.2.234-239.1985 | 1985 |
| #1925 | Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5078 |
| #20215 | Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 ) |
| #20218 | Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 ) |
| #34021 | ; Curators of the CIP; |
| #47223 | Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 20908 |
| #66792 | Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) . |
| #66793 | Mukherjee et al.: GEBA: 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. 35: 676 - 683 2017 ( DOI 10.1038/nbt.3886 , PubMed 28604660 ) |
| #66794 | Antje Chang, Lisa Jeske, Sandra Ulbrich, Julia Hofmann, Julia Koblitz, Ida Schomburg, Meina Neumann-Schaal, Dieter Jahn, Dietmar Schomburg: BRENDA, the ELIXIR core data resource in 2021: new developments and updates. Nucleic Acids Res. 49: D498 - D508 2020 ( DOI 10.1093/nar/gkaa1025 , PubMed 33211880 ) |
| #67770 | Japan Collection of Microorganism (JCM) ; Curators of the JCM; |
| #68374 | Automatically annotated from API ID32E . |
| #119743 | Collection of Institut Pasteur ; Curators of the CIP; CIP 103359 |
| #125438 | Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 ) |
| #125439 | Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 . |
| #126262 | A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 ) |
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