Name: Leclercia adecarboxylata DSM 5077
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4980

Type strain:

Species: Leclercia adecarboxylata

Culture col. no.: DSM 5077, ATCC 23216, DSM 30081, IAM 14240, JCM 1667, BCRC 12160, CCUG 14184, CIP 82.92, HAMBI 1696, KCTC 1036, LMG 2803, NBRC 102595, NCIMB 13153, NCTC 13032, VTT E-991143

Strain history: CIP <- 1982, ATCC <- H. Leclerc: strain 1783, Escherichia leclercia

NCBI tax ID(s): 911008 (strain), 83655 (species)

SI-ID 125843

LMG 2803, ATCC 23216, CCUG 14184, DSM 30081, JCM 1667, ATCC 1783, DSM 5077, IAM 14240, NCIMB 13153, KCTC 1036, BCRC 12160, CCRC 12160, HAMBI 1696, NCTC 13032, CIP 82.92, NBRC 102595, CNCTC 6466, VTT E-991143

Other strains from Leclercia adecarboxylata

Section

Leclercia adecarboxylata DSM 5077 is a mesophilic bacterium that was isolated from Drinking water.

mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Leclercia*
	Species	**Leclercia adecarboxylata**
	Full Scientific Name (LPSN)	Leclercia adecarboxylata (Leclerc 1962) Tamura et al. 1987

Synonym

Escherichia adecarboxylata

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1924]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #1924]

Culture medium growth

[Ref.: #1924]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1924]

Culture medium composition

expand / minimize

[Ref.: #37726]

Culture medium

MEDIUM 3 - Columbia agar

[Ref.: #37726]

Culture medium growth

[Ref.: #37726]

Culture medium composition

expand / minimize

[Ref.: #116037]

Culture medium

CIP Medium 3

[Ref.: #116037]

Culture medium growth

[Ref.: #116037]

Culture medium link

Medium recipe provided by DSMZ

		Temperature
[Ref.: #1924]	growth	37 °C
[Ref.: #37726]	growth	30 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #1924]	Temperature range	mesophilic
[Ref.: #37726]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #67770]	Sample type/isolated from	Drinking water

[Ref.: #116037]	Sample type/isolated from	Environment, Drinking water
* marker position based on {}

[Ref.: #69479]

Global distribution of 16S sequence JN175338 (>99% sequence identity) for Enterobacterales from Microbeatlas

Aquatic Samples	888
Soil Samples	575
Animal Samples	11838
Plant Samples	920
Total Samples	14221

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1924]	Biosafety level	2	Risk group (German classification) According to TRBA 466
[Ref.: #116037]	Biosafety level	1	Risk group (French classification)

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #20218]	Leclercia adecarboxylata strain CIP 82.92 16S ribosomal RNA gene, complete sequence	JN175338	1527	ENA	83655 tax ID	*
[Ref.: #20218]	Leclercia adecarboxylata strain LMG 2803 16S ribosomal RNA gene, partial sequence	GQ856082	1506	ENA	911008 tax ID	*
[Ref.: #20218]	Leclercia adecarboxylata gene for 16S rRNA, partial sequence, strain: NBRC 102595	AB681872	1465	ENA	83655 tax ID	*

Genome sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Leclercia adecarboxylata ATCC 23216 = NBRC 102595	GCA_001515505	contig	GenBank	911008 tax ID
[Ref.: #67770]	Leclercia adecarboxylata ATCC 23216 = NBRC 102595	GCA_000735515	contig	GenBank	911008 tax ID
[Ref.: #67770]	Leclercia adecarboxylata strain NCTC13032 genome assembly, chromosome: 1	LR590464		GenBank	83655 tax ID
[Ref.: #66792]	Leclercia adecarboxylata ATCC 23216 = NBRC 102595	911008.3	wgs	PATRIC	911008 tax ID	*
[Ref.: #66792]	Leclercia adecarboxylata strain FDAARGOS_1505	83655.148	complete	PATRIC	83655 tax ID	*
[Ref.: #66792]	Leclercia adecarboxylata NBRC 102595	2731957556	draft	JGI IMG/M	911008 tax ID	*

[Ref.: #1924]

GC-content

52.55 mol%

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Leclercia adecarboxylata NCTC13032 NCBI: GCA_901472455.1
[Ref.: #69480]	flagellated	no	65.962	no
[Ref.: #69480]	gram-positive	no	98.127	no
[Ref.: #69480]	anaerobic	no	96.4	no
[Ref.: #69480]	aerobic	yes	82.919	no
[Ref.: #69480]	halophile	no	89.415	no
[Ref.: #69480]	spore-forming	no	95.103	no
[Ref.: #69480]	thermophile	no	99.394	no
[Ref.: #69480]	glucose-util	yes	94.616	no
[Ref.: #69480]	motile	yes	88.249	no
[Ref.: #69480]	glucose-ferment	yes	90.906	no

Availability in culture collections External links

[Ref.: #1924]

Culture collection no.

DSM 5077, ATCC 23216, DSM 30081, IAM 14240, JCM 1667, BCRC 12160, CCUG 14184, CIP 82.92, HAMBI 1696, KCTC 1036, LMG 2803, NBRC 102595, NCIMB 13153, NCTC 13032, VTT E-991143

[Ref.: #74476]

SI-ID 125843

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Enterobacter xiangfangensis sp. nov., isolated from Chinese traditional sourdough, and reclassification of Enterobacter sacchari Zhu et al. 2013 as Kosakonia sacchari comb. nov.	Gu CT, Li CY, Yang LJ, Huo GC	Int J Syst Evol Microbiol	10.1099/ijs.0.064709-0	2014	*

References

#1924

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5077

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#37726 ; Curators of the CIP;

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#74476

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID125843.1 )

#116037 Collection of Institut Pasteur ; Curators of the CIP; CIP 82.92
* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Leclercia adecarboxylata in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Leclercia adecarboxylata NCTC13032

Change proposal

Change proposal