Name: Klebsiella sp. DSM 4798
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4940

Type strain:

Species: Klebsiella sp.

Culture col. no.: DSM 4798, ATCC 8724, BUCSAV 143, CCM 1901, NCDC 380-68, NCIB 8017, NCIB 8521, NRC 474, NRRL B-199, JCM 20051, CIP 110762, IAM 1102, IFO 3318, NBRC 3318, NCIMB 8017, NCIMB 8521, NCIMB 9901

Strain history: IAM 1102 <-- ATU <-- ATCC 8724 <-- NRRL B-199.

NCBI tax ID(s): 576 (species)

SI-ID 45481

ATCC 8724, NRRL B-199, CCM 1901, NCIB 8017, NCIB 8521, DSM 4798, NCIMB 8017, NCIMB8521, NCIMB9901, IFO 3318, NRRL B-1999, LMD 72.65, KCTC 1686, NCCB 72065, NBRC 3318, BCRC 10026, CCRC 10026, IAM 1102, CDBB 970, JCM 20051

Other strains from Klebsiella sp.

K. sp. DSM 7460
K. sp. 58, DSM 21696
K. sp. BRL6-2, DSM 25465
K. sp. J1, DSM 101559
K. sp. CCUG 15901
K. sp. CCUG 39852
K. sp. CCUG 47534
K. sp. CCUG 60507, NCTC 9140
K. sp. CCUG 60508, NCTC 9174
K. sp. CCUG 60509

Section

Klebsiella sp. DSM 4798 is a mesophilic, Gram-negative human pathogen of the family Enterobacteriaceae.

Gram-negative
human pathogen
mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Klebsiella*
	Full Scientific Name (LPSN)	Klebsiella Trevisan 1885 (Approved Lists 1980)

	Synonym	Calymmatobacterium
	Synonym	Raoultella

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %99.806

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1825]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #1825]

Culture medium growth

[Ref.: #1825]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1825]

Culture medium composition

expand / minimize

[Ref.: #1825]

Culture medium

TRYPTICASE SOY YEAST EXTRACT MEDIUM (DSMZ Medium 92)

[Ref.: #1825]

Culture medium growth

[Ref.: #1825]

Culture medium link

Medium recipe at MediaDive

[Ref.: #1825]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #1825]			growth	37 °C
[Ref.: #67770]			growth	37 °C

[Ref.: #1825]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #69481]	Ability of spore formation	no Confidence in %94
[Ref.: #69480]	Ability of spore formation	no Confidence in %99.895

[Ref.: #1825]

Name of produced compound

2,3 butanediol

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	+	energy source	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	yes	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		+	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #1825]	18156	+	-	-	-	+	-	-	-	+	+	-	+	+	+	+	+	+	+	+	+	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #1825]	16809	+	+	+	-	+	-	+	-	+	+	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1825]	Pathogenicity (human)	yes
[Ref.: #1825]	Pathogenicity (animal)	yes
[Ref.: #1825]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Klebsiella pneumoniae subsp. pneumoniae JCM 20051	GCA_001312905	contig	GenBank	1300166 tax ID	*
[Ref.: #66792]	Klebsiella michiganensis strain NBRC 3318	1134687.26	wgs	PATRIC	1134687 tax ID	*
[Ref.: #66792]	Klebsiella pneumoniae subsp. pneumoniae JCM 20051	1300166.3	wgs	PATRIC	1300166 tax ID	*
[Ref.: #66792]	Klebsiella pneumoniae pneumoniae JCM 20051	2734481921	draft	JGI IMG/M	1300166 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Klebsiella pneumoniae subsp. pneumoniae JCM 20051 PATRIC: 1300166.3
[Ref.: #69481]	spore-forming	no	94	no

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Klebsiella michiganensis strain NBRC 3318 PATRIC: 1134687.26
[Ref.: #69480]	motile	no	84.713	no
[Ref.: #69480]	flagellated	no	94.26	no
[Ref.: #69480]	gram-positive	no	97.221	no
[Ref.: #69480]	anaerobic	no	96.793	no
[Ref.: #69480]	aerobic	yes	83.021	no
[Ref.: #69480]	halophile	no	87.29	no
[Ref.: #69480]	spore-forming	no	93.729	no
[Ref.: #69480]	thermophile	no	99.672	yes
[Ref.: #69480]	glucose-util	yes	94.535	no
[Ref.: #69480]	glucose-ferment	yes	89.885	yes

Availability in culture collections External links

[Ref.: #1825]

Culture collection no.

DSM 4798, ATCC 8724, BUCSAV 143, CCM 1901, NCDC 380-68, NCIB 8017, NCIB 8521, NRC 474, NRRL B-199, JCM 20051, CIP 110762, IAM 1102, IFO 3318, NBRC 3318, NCIMB 8017, NCIMB 8521, NCIMB 9901

[Ref.: #74436]

SI-ID 45481

References

#1825

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 4798

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#74436

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID45481.1 )

* These data were automatically processed and therefore are not curated

Change proposal

You found an error in BacDive? Please tell us about it!

Note that changes will be reviewed and judged. If your changes are legitimate, changes will occur within the next BacDive update. Only proposed changes supported by the according reference will be reviewed. The BacDive team reserves the right to reject proposed changes.

Search for species Klebsiella sp. in external resources:
SILVA
BRENDA
PANGAEA
StrainInfo
GBIF

Klebsiella pneumoniae subsp. pneumoniae JCM 20051

Klebsiella michiganensis strain NBRC 3318

Change proposal

Change proposal