Name: Klebsiella sp. J1
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 131037

Type strain:

Species: Klebsiella sp.

Strain Designation: J1

Culture col. no.: DSM 101559

Strain history: <- A. Li, State Key Laboratory of Urban Waste Resource and Environment, Harbin Institute of Technology, China; J1 <- J. Xing, State Key Laboratory of Urban Waste Resource and Environment

NCBI tax ID(s): 576 (species)

SI-ID 403247

DSM 101559

Other strains from Klebsiella sp.

K. sp. DSM 4798, ATCC 8724, BUCSAV 143, ...
K. sp. DSM 7460
K. sp. 58, DSM 21696
K. sp. BRL6-2, DSM 25465
K. sp. CCUG 15901
K. sp. CCUG 39852
K. sp. CCUG 47534
K. sp. CCUG 60507, NCTC 9140
K. sp. CCUG 60508, NCTC 9174
K. sp. CCUG 60509

Section

Klebsiella sp. J1 is a mesophilic bacterium that was isolated from activated sludge in municipal wastewater.

mesophilic
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Klebsiella*
	Full Scientific Name (LPSN)	Klebsiella Trevisan 1885 (Approved Lists 1980)

	Synonym	Calymmatobacterium
	Synonym	Raoultella

Information on culture and growth conditions Culture and growth conditions

[Ref.: #22329]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #22329]

Culture medium growth

[Ref.: #22329]

Culture medium link

Medium recipe at MediaDive

[Ref.: #22329]

Culture medium composition

expand / minimize

	Temperatures	Kind of temperature		Temperature
[Ref.: #22329]			growth	28 °C

[Ref.: #22329]

Temperature range

mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #22329]

Name of produced compound

flocculating agent

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	arginine ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	lysine ChEBI	+	degradation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	-	energy source	* from API 20E
[Ref.: #68368]	urea ChEBI	+	hydrolysis	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite	Production
[Ref.: #68368]	acetoin ChEBI	yes	* from API 20E
[Ref.: #68368]	hydrogen sulfide ChEBI	no	* from API 20E
[Ref.: #68368]	indole ChEBI	no	* from API 20E

	Physiological tests	Metabolite	Voges-Proskauer-test	Indole test
[Ref.: #68368]		acetoin ChEBI	+		* from API 20E
[Ref.: #68368]		indole ChEBI		-	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	arginine dihydrolase	-	3.5.3.6	* from API 20E
[Ref.: #68368]	beta-galactosidase	+	3.2.1.23	* from API 20E
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	lysine decarboxylase	+	4.1.1.18	* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E
[Ref.: #68368]	urease	+	3.5.1.5	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #22329]	16829	+	-	+	-	+	-	+	-	-	+	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #22329]	Sample type/isolated from	activated sludge in municipal wastewater
[Ref.: #22329]	Geographic location (country and/or sea, region)	Habin
[Ref.: #22329]	Country	China
[Ref.: #22329]	Country ISO 3 Code	CHN
[Ref.: #22329]	Continent	Asia
* marker position based on {}

Isolation sources categories

#Engineered	#Waste	#Activated sludge
#Engineered	#Waste	#Wastewater

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Klebsiella pneumoniae strain J1	573.15927	plasmid	PATRIC	573 tax ID	*
[Ref.: #66792]	Klebsiella pneumoniae strain J1	573.1987	complete	PATRIC	573 tax ID	*
[Ref.: #66792]	Klebsiella pneumoniae strain J1	573.15926	plasmid	PATRIC	573 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Klebsiella pneumoniae strain J1 PATRIC: 573.1987
[Ref.: #69480]	gram-positive	no	97.176	no
[Ref.: #69480]	anaerobic	no	95.964	no
[Ref.: #69480]	halophile	no	88.937	no
[Ref.: #69480]	spore-forming	no	92.914	no
[Ref.: #69480]	glucose-util	yes	94.389	no
[Ref.: #69480]	thermophile	no	99.612	no
[Ref.: #69480]	flagellated	no	92.85	no
[Ref.: #69480]	aerobic	yes	90.044	no
[Ref.: #69480]	motile	no	84.159	no
[Ref.: #69480]	glucose-ferment	yes	91.558	no

Availability in culture collections External links

[Ref.: #22329]

Culture collection no.

DSM 101559

[Ref.: #89506]

SI-ID 403247

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#22329

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 101559

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68368

Automatically annotated from API 20E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#89506

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID403247.1 )

* These data were automatically processed and therefore are not curated

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Klebsiella pneumoniae strain J1

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