Name: Klebsiella sp. CCUG 60507
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 156137

Type strain:

Species: Klebsiella sp.

Culture col. no.: CCUG 60507, NCTC 9140

NCBI tax ID(s): 576 (species)

SI-ID 116220

NCTC 9140

Special Collections

CCUG

Other strains from Klebsiella sp.

Section

Klebsiella sp. CCUG 60507 is an aerobe, Gram-negative bacterium that was isolated from Human urine.

Gram-negative
aerobe
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	14-12-2023 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Klebsiella*
	Full Scientific Name (LPSN)	Klebsiella Trevisan 1885 (Approved Lists 1980)

	Synonym	Calymmatobacterium
	Synonym	Raoultella

Information on morphological and physiological properties Morphology

[Ref.: #69480]	Gram stain	negative Confidence in %100

Information on culture and growth conditions Culture and growth conditions

	Temperatures	Kind of temperature		Temperature
[Ref.: #62334]			growth	30 °C

Information on physiology and metabolism Physiology and metabolism

[Ref.: #62334]

Oxygen tolerance

aerobe

[Ref.: #69481]

Ability of spore formation

no Confidence in %99

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68374]	arginine ChEBI	-	hydrolysis	* from API ID32E
[Ref.: #68374]	cellobiose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	D-arabitol ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	D-galacturonic acid ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	D-glucose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	D-mannitol ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	L-arabinose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	L-arabitol ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	L-rhamnose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	lysine ChEBI	+	degradation	* from API ID32E
[Ref.: #68374]	malonate ChEBI	+	assimilation	* from API ID32E
[Ref.: #68374]	maltose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	myo-inositol ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	ornithine ChEBI	-	degradation	* from API ID32E
[Ref.: #68374]	palatinose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	Potassium 5-ketogluconate ChEBI	-	builds acid from	* from API ID32E
[Ref.: #68374]	ribitol ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	sorbitol ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	sucrose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	trehalose ChEBI	+	builds acid from	* from API ID32E
[Ref.: #68374]	tryptophan ChEBI	-	energy source	* from API ID32E
[Ref.: #68374]	urea ChEBI	-	hydrolysis	* from API ID32E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite	Production
[Ref.: #68374]		indole ChEBI	no	* from API ID32E

	Physiological tests	Metabolite	Indole test
[Ref.: #68374]		indole ChEBI	-	* from API ID32E

	Enzyme	Enzyme activity	EC number
[Ref.: #68374]	alpha-galactosidase	+	3.2.1.22	* from API ID32E
[Ref.: #68374]	alpha-glucosidase	-	3.2.1.20	* from API ID32E
[Ref.: #68374]	alpha-maltosidase	+		* from API ID32E
[Ref.: #68374]	arginine dihydrolase	-	3.5.3.6	* from API ID32E
[Ref.: #68374]	beta-galactosidase	+	3.2.1.23	* from API ID32E
[Ref.: #68374]	beta-glucosidase	+	3.2.1.21	* from API ID32E
[Ref.: #68374]	beta-glucuronidase	-	3.2.1.31	* from API ID32E
[Ref.: #68374]	L-aspartate arylamidase	+	3.4.11.21	* from API ID32E
[Ref.: #68374]	lipase	-		* from API ID32E
[Ref.: #68374]	lysine decarboxylase	+	4.1.1.18	* from API ID32E
[Ref.: #68374]	N-acetyl-beta-glucosaminidase	-	3.2.1.52	* from API ID32E
[Ref.: #68374]	ornithine decarboxylase	-	4.1.1.17	* from API ID32E
[Ref.: #68374]	urease	-	3.5.1.5	* from API ID32E
	Only first 10 entries are displayed. Click here to see all.

API® ID32E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	Ornithine decarboxylaseODC	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Urease/urea hydrolysisURE	Acid from L-arabitolLARL	Acid from D-galacturonic acidGAT	Acid from 5-Ketogluconate5KG	LipaseLIP	Phenol red (Acidification)RP	beta-Glucosidasebeta GLU	Acid from D-mannitolMAN	Acid from maltoseMAL	Acid from D-adonitolADO	Acid from palatinosePLE	beta-Glucuronidasebeta GUR	MalonateMNT	Indole productionIND	N-Acetyl-beta-Glucosaminidasebeta NAG	beta-Galactosidasebeta GAL	Acid from D-glucoseGLU	Acid from sucroseSAC	Acid from L-arabinoseLARA	Acid from D-arabitolDARL	alpha-Glucosidasealpha GLU	alpha-Galactosidasealpha GAL	Acid from trehaloseTRE	Acid from L-rhamnoseRHA	Acid from inositolINO	Acid from cellobioseCEL	Acid from sorbitolSOR	alpha-MaltosidasealphaMAL	L-aspartic acid arylamidaseAspA
[Ref.: #62334]	1930	-	-	+	-	-	+	-	-	-	+	+	+	+	+	-	+	-	-	+	+	+	+	+	-	+	+	+	+	+	+	+	+

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #62334]	Sample type/isolated from	Human urine
[Ref.: #62334]	Sampling date	1950
[Ref.: #62334]	Country	Denmark
[Ref.: #62334]	Country ISO 3 Code	DNK
[Ref.: #62334]	Continent	Europe
* marker position based on {}

Isolation sources categories

#Host	#Human	-
#Host Body Product	#Fluids	#Urine

What are isolation sources categories?

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Klebsiella pneumoniae NCTC9140	GCA_900451465	contig	GenBank ENA	573 tax ID	*
[Ref.: #66792]	Klebsiella pneumoniae strain NCTC9140	573.20109	wgs	PATRIC	573 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from GenomeNet Sporulation v. 1 based on: Klebsiella pneumoniae strain NCTC9140 PATRIC: 573.20109
[Ref.: #69481]	spore-forming	spore-formingⓘ	no	99	no

	Trait	Model	Prediction	Confidence in %	In training data
	Predictions from Diaspora project based on: Klebsiella pneumoniae strain NCTC9140 PATRIC: 573.20109
[Ref.: #69480]	gram-positive	gram-positiveⓘ	no	100	no
[Ref.: #69480]	anaerobic	anaerobicⓘ	no	96.334	no
[Ref.: #69480]	spore-forming	spore-formingⓘ	no	87.571	no
[Ref.: #69480]	aerobic	aerobicⓘ	no	54.933	yes
[Ref.: #69480]	thermophilic	thermophileⓘ	no	100	no
[Ref.: #69480]	flagellated	motile2+ⓘ	no	79.497	no

Availability in culture collections External links

[Ref.: #62334]

Culture collection no.

CCUG 60507, NCTC 9140

[Ref.: #109438]

SI-ID 116220

References

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#62334 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 60507

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#68374

Automatically annotated from API ID32E .

#69480

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Predictions based on genome sequence made in the Diaspora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#69481

Xiao-Yin To, René Mreches, Martin Binder, Alice C. McHardy, Philipp C. Münch: Predictions based on the model GenomeNet Sporulation v. 1 . ( DOI 10.21203/rs.3.rs-2527258/v1 )

#109438

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID116220.1 )

* These data were automatically processed and therefore are not curated

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Klebsiella pneumoniae strain NCTC9140

Klebsiella pneumoniae strain NCTC9140

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