Name: Klebsiella oxytoca 479-2
Creator: BacDive
License: http://creativecommons.org/licenses/by-nc/4.0/

Strain identifier

BacDive ID: 4941

Type strain:

Species: Klebsiella oxytoca

Strain Designation: 479-2

Culture col. no.: DSM 5175, ATCC 13182, IAM 14201, JCM 1665, CCUG 15717, CECT 860, CIP 103434, KACC 11934, LMG 3055, NBRC 102593, NBRC 105695, NCIMB 12259, VTT E-97766

Strain history: Y. Kosako 82060 <-- R. Sakazaki 181 <-- ATCC 13182 <-- R. Hugh 479-2.

NCBI tax ID(s): 1218097 (strain), 571 (species)

Other strains from Klebsiella oxytoca

Section

Klebsiella oxytoca 479-2 is an aerobe, mesophilic human pathogen that was isolated from pharyngeal tonsil.

aerobe
human pathogen
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	07-12-2022 (DD-MM-YYYY)
	Domain	"Bacteria"
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Enterobacterales*
	Family	*Enterobacteriaceae*
	Genus	*Klebsiella*
	Species	**Klebsiella oxytoca**
	Full Scientific Name (PNU)	Klebsiella oxytoca (Flügge 1886) Lautrop 1956 (Approved Lists 1980)

Synonym

"Bacillus oxytocus"

Information on culture and growth conditions Culture and growth conditions

[Ref.: #1950]

Culture medium

COLUMBIA BLOOD MEDIUM (DSMZ Medium 693)

[Ref.: #1950]

Culture medium growth

[Ref.: #1950]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #1950]

Culture medium composition

expand / minimize

[Ref.: #1950]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1)

[Ref.: #1950]

Culture medium growth

[Ref.: #1950]

Culture medium link

Medium recipe provided by DSMZ

[Ref.: #1950]

Culture medium composition

expand / minimize

[Ref.: #34208]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #34208]

Culture medium growth

[Ref.: #34208]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #1950]	growth	37 °C
[Ref.: #34208]	growth	30 °C
[Ref.: #46330]	growth	37 °C
[Ref.: #67770]	growth	37 °C

[Ref.: #1950]	Temperature range	mesophilic
[Ref.: #34208]	Temperature range	mesophilic
[Ref.: #46330]	Temperature range	mesophilic
[Ref.: #67770]	Temperature range	mesophilic

Information on physiology and metabolism Physiology and metabolism

[Ref.: #46330]

Oxygen tolerance

aerobe

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #68368]	amygdalin ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	citrate ChEBI	+	assimilation	* from API 20E
[Ref.: #68368]	D-glucose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	D-mannitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	gelatin ChEBI	-	hydrolysis	* from API 20E
[Ref.: #68368]	L-arabinose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	L-rhamnose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	melibiose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	myo-inositol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	ornithine ChEBI	-	degradation	* from API 20E
[Ref.: #68368]	sorbitol ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	sucrose ChEBI	+	fermentation	* from API 20E
[Ref.: #68368]	tryptophan ChEBI	+	energy source	* from API 20E
	Only first 10 entries are displayed. Click here to see all.

	Metabolite production	Metabolite
[Ref.: #68368]		hydrogen sulfide ChEBI	* from API 20E
[Ref.: #68368]		indole ChEBI	* from API 20E

	Physiological tests	Metabolite	Indole test
[Ref.: #68368]		indole ChEBI	+	* from API 20E

	Enzyme	Enzyme activity	EC number
[Ref.: #68368]	cytochrome oxidase	-	1.9.3.1	* from API 20E
[Ref.: #68368]	gelatinase	-		* from API 20E
[Ref.: #68368]	ornithine decarboxylase	-	4.1.1.17	* from API 20E
[Ref.: #68368]	tryptophan deaminase	-	4.1.99.1	* from API 20E

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #1950]	15510	+	-	-	-	+	-	+	-	+	-	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #1950]	15302	+	-	+	-	+	-	+	-	+	+	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #1950]	14303	-	+	+	-	+	-	+	-	+	+	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #1950]	14120	+	-	+	-	+	-	-	-	+	+	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #1950]	Sample type/isolated from	pharyngeal tonsil

[Ref.: #46330]	Sample type/isolated from	Human pharyngeal tonsil

[Ref.: #67770]	Sample type/isolated from	Pharyngeal tonsil
* marker position based on {}

Isolation sources categories

#Host Body-Site

#Oral cavity and airways

What are isolation sources categories?

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #1950]	Pathogenicity (human)	yes
[Ref.: #1950]	Pathogenicity (animal)	yes
[Ref.: #1950]	Biosafety level	2	Risk group (German classification) According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #1950]	Klebsiella oxytoca 16S ribosomal RNA gene, partial sequence	AF129440	1436	ENA	571 tax ID
[Ref.: #20218]	Klebsiella oxytoca gene for 16S rRNA, partial sequence, strain: JCM 1665	AB626120	1462	ENA	571 tax ID	*
[Ref.: #20218]	Klebsiella oxytoca gene for 16S rRNA, partial sequence, strain: NBRC 102593	AB681870	1465	ENA	571 tax ID	*
[Ref.: #20218]	Klebsiella oxytoca partial 16S rRNA gene, type strain SB175T	AJ871858	1454	ENA	571 tax ID	*
[Ref.: #20218]	Klebsiella oxytoca strain ATCC 13182 16S ribosomal RNA gene, partial sequence	FJ971867	795	ENA	571 tax ID	*
[Ref.: #20218]	Klebsiella oxytoca 16S ribosomal RNA gene, partial sequence	U78183	1502	ENA	571 tax ID	*
[Ref.: #20218]	Klebsiella oxytoca 16S rRNA gene, strain ATCC13182T, partial	Y17655	1452	ENA	571 tax ID	*
[Ref.: #20218]	Klebsiella oxytoca gene for 16S ribosomal RNA, partial sequence	AB004754	1441	ENA	571 tax ID	*

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #67770]	Klebsiella oxytoca NBRC 105695 NBRC 105695	GCA_001598695	contig	GenBank	1218097 tax ID
[Ref.: #66792]	Klebsiella oxytoca DSM 5175	GCA_020115535	contig	GenBank	571 tax ID	*
[Ref.: #66792]	Klebsiella oxytoca NBRC 105695	1218097.3	wgs	PATRIC	1218097 tax ID	*
[Ref.: #66792]	Klebsiella oxytoca strain DSM 5175	571.1124	wgs	PATRIC	571 tax ID	*
[Ref.: #66792]	Klebsiella oxytoca NBRC 105695	2731957710	draft	JGI IMG/M	1218097 tax ID	*

Availability in culture collections External links

[Ref.: #1950]

Culture collection no.

DSM 5175, ATCC 13182, IAM 14201, JCM 1665, CCUG 15717, CECT 860, CIP 103434, KACC 11934, LMG 3055, NBRC 102593, NBRC 105695, NCIMB 12259, VTT E-97766

[Ref.: #20218]

Associated Passport(s) in StrainInfo

151753, 159086, 12427

Literature:

Only first 10 entries are displayed. Click here to see all.

Topic	Title	Authors	Journal	DOI	Year
Metabolism	Tenebrio molitor: possible source of polystyrene-degrading bacteria.	Machona O, Chidzwondo F, Mangoyi R	BMC Biotechnol	10.1186/s12896-021-00733-3	2022	*
Pathogenicity	In vitro assessment of Pediococcus acidilactici Kp10 for its potential use in the food industry.	Abbasiliasi S, Tan JS, Bashokouh F, Ibrahim TAT, Mustafa S, Vakhshiteh F, Sivasamboo S, Ariff AB	BMC Microbiol	10.1186/s12866-017-1000-z	2017	*
Metabolism	Production of Biohydrogen from Wastewater by Klebsiella oxytoca ATCC 13182.	Thakur V, Tiwari KL, Jadhav SK	Water Environ Res	10.2175/106143015X14338845156740	2015	*
Enzymology	Identification of the 4-hydroxycinnamate decarboxylase (PAD) gene of Klebsiella oxytoca.	Uchiyama H, Hashidoko Y, Kuriyama Y, Tahara S	Biosci Biotechnol Biochem	10.1271/bbb.70496	2008	*
Metabolism	Identification of the essential histidine residue for high-affinity binding of AlbA protein to albicidin antibiotics.	Weng LX, Xu JL, Li Q, Birch RG, Zhang LH	Microbiology (Reading)	10.1099/mic.0.25942-0	2003	*
Pathogenicity	Enterotoxic activity of Klebsiella oxytoca cytotoxin in rabbit intestinal loops.	Minami J, Katayama S, Matsushita O, Sakamoto H, Okabe A	Infect Immun	10.1128/iai.62.1.172-177.1994	1994	*
Phylogeny	Production of a unique cytotoxin by Klebsiella oxytoca.	Minami J, Okabe A, Shiode J, Hayashi H	Microb Pathog	10.1016/0882-4010(89)90056-9	1989	*
	The Antibacterial Activity of Crude Extracts of Secondary Metabolites from Bacterial Endophytes Associated with Dicoma anomala.	Makuwa SC, Serepa-Dlamini MH	Int J Microbiol	10.1155/2021/8812043	2021	*

References

#1950

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5175

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34208 ; Curators of the CIP;
#46330 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15717

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67770 Japan Collection of Microorganism (JCM) ; Curators of the JCM;

#68368

Automatically annotated from API 20E .

* These data were automatically processed and therefore are not curated

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