Klebsiella oxytoca 479-2 | Type strain | DSM 5175, ATCC 13182, IAM 14201, JCM 1665, CCUG 15717, CECT 860

Strain identifier

BacDive ID: 4941

Type strain:

Species: Klebsiella oxytoca

Strain Designation: 479-2

Culture col. no.: DSM 5175, ATCC 13182, IAM 14201, JCM 1665, CCUG 15717, CECT 860

Section

Name and taxonomic classification
Morphology and physiology
Culture and growth conditions
Isolation, sampling and environmental information
Application and interaction
Molecular biology
Strain availability

External links

Information on the name and the taxonomic classification.Name and taxonomic classification

[Ref.: #1950]	Domain	Bacteria
[Ref.: #1950]	Phylum	Proteobacteria
[Ref.: #1950]	Class	Gammaproteobacteria
[Ref.: #1950]	Order	Enterobacteriales, not validated
[Ref.: #1950]	Family	Enterobacteriaceae
[Ref.: #1950]	Genus	Klebsiella
[Ref.: #1950]	Species	Klebsiella oxytoca
[Ref.: #1950]	Full Scientific Name	Klebsiella oxytoca (Flügge 1886) Lautrop 1956
[Ref.: #1950]	Strain Designation	479-2
[Ref.: #1950]	Type strain

		Prokaryotic Nomenclature Up-to-date (PNU)	Taxonomical status	Literature reference
	Last PNU update	13-08-2019 (DD-MM-YYYY)
[Ref.: #20215]	Domain	Bacteria
[Ref.: #20215]	Phylum	Proteobacteria
[Ref.: #20215]	Class	Gammaproteobacteria		Int. J. Syst. Evol. Microbiol. 55:2235
[Ref.: #20215]	Family	Enterobacteriaceae		Int. J. Syst. Bacteriol. 30:225
[Ref.: #20215]	Genus	Klebsiella	genus (AL)	Int. J. Syst. Bacteriol. 30:225
[Ref.: #20215]	Species	Klebsiella oxytoca	comb. nov. (AL)	Int. J. Syst. Bacteriol. 30:225
[Ref.: #20215]	Full Scientific Name	Klebsiella oxytoca (Flügge 1886) Lautrop 1956

Information on morphological and physiological propertiesMorphology and physiology

API® 20E:

Note that the displayed test results represent raw data and therefore may deviate!

	API ID	beta-GalactosidaseONPG	Arginine dihydrolaseADH (Arg)	Lysine decarboxylaseLDC (Lys)	Ornithine decarboxylaseODC	Citrate utilizationCIT	H2S productionH2S	Urease/urea hydrolysisURE	Tryptophan deaminaseTDA (Trp)	Indole productionIND	Acetoin production (Voges Proskauer test)VP	Gelatinase/gelatin hydrolysisGEL	Fermentation/oxidation of D-glucoseGLU	Fermentation/oxidation of D-mannitolMAN	Fermentation/oxidation of inositolINO	Fermentation/oxidation of sorbitolSor	Fermentation/oxidation of L-rhamnoseRHA	Fermentation/oxidation of sucroseSAC	Fermentation/oxidation of melibioseMEL	Fermentation/oxidation of amygdalinAMY	Fermentation/oxidation of L-arabinoseARA	Cytochrome oxidaseOX	Nitrite productionNO2	Reduction to N2N2	MotilityMOB	Growth on MacConkey mediumMAC	Oxidative catabolisation of D-glucoseOF-O	Fermentation of D-glucoseOF-F
[Ref.: #1950]	4558	-	+	+	-	+	-	+	-	+	+	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #1950]	4374	+	-	+	-	+	-	-	-	+	+	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.
[Ref.: #1950]	5484	+	-	+	-	+	-	+	-	+	+	-	+	+	+	+	+	+	+	+	+	-	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.	not determinedn.d.

[Ref.: #46330]

Oxygen tolerance

aerobe

Information on culture and growth conditionsCulture and growth conditions

[Ref.: #1950]

Culture medium

NUTRIENT AGAR (DSMZ Medium 1), 37°C

[Ref.: #1950]

Culture medium growth

[Ref.: #1950]

Culture medium link

medium recipe provided by DSMZ

[Ref.: #34208]

Culture medium

MEDIUM 72- for trypto casein soja agar

[Ref.: #34208]

Culture medium growth

[Ref.: #34208]

Culture medium composition

expand / minimize

		Temperature
[Ref.: #1950]	growth	37 ̊C
[Ref.: #34208]	growth	30 ̊C
[Ref.: #46330]	growth	37 ̊C

[Ref.: #1950]	Temperature range	mesophilic
[Ref.: #34208]	Temperature range	mesophilic
[Ref.: #46330]	Temperature range	mesophilic

Information on isolation source, the sampling and environmental conditionsIsolation, sampling and environmental information

[Ref.: #1950]

Sample type/isolated from

pharyngeal tonsil

[Ref.: #46330]

Sample type/isolated from

Human pharyngeal tonsil

Isolation sources categories

#Host Body-Site

#Oral cavity and airways

What are isolation sources categories?

* marker position based on {}

Information on possible application of the strain and its possible interaction with e.g. potential hostsApplication and interaction

[Ref.: #1950]	Pathogenicity (human)	yes
[Ref.: #1950]	Pathogenicity (animal)	yes
[Ref.: #1950]	Biosafety level	2	Risk group (German classification)

Information on genomic background e.g. entries in nucleic sequence databassMolecular biology

Sequence information:

Only first 5 entries are displayed. Click here to see all.

	Sequence database	Sequence accession description	Sequence accession number	Sequence type	Sequence length (bp)	Associated NCBI tax ID
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca DNA gyrase A (gyrA) gene, partial cds	AF038433		180	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca DNA gyrase A (gyrA) gene, partial cds	AF052257		589	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca 16S ribosomal RNA gene, partial sequence	AF129440	16S	1436	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca strain ATCC 13182 beta-lactamase K1 (bla OXY) gene, complete cds	AF473577		1056	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca albicidin resistance protein (albA) gene, complete cds	AF525464		666	571	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Klebsiella oxytoca partial rpoB gene for RNA polymerase, beta subunit, type strain SB175T	AJ871804		940	571	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Klebsiella oxytoca partial gapdh gene for glyceraldehyde-3-phosphate dehydrogenase, type strain SB175T	AJ871823		573	571	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Klebsiella oxytoca partial gyrA gene for DNA gyrase, subunit A, type strain SB175T	AJ871840		383	571	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Klebsiella oxytoca partial 16S rRNA gene, type strain SB175T	AJ871858	16S	1454	571	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Klebsiella oxytoca blaOXY-2 gene for beta-lactamase, type strain SB175T	AJ871867		873	571	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 1608 from Patent WO0123604	AX110875		341	571	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 1655 from Patent WO0123604	AX110922		776	571	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 1777 from Patent WO0123604	AX111044		668	571	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 1825 from Patent WO0123604	AX111092		79	571	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 1829 from Patent WO0123604	AX111096		70	571	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Sequence 1839 from Patent WO0123604	AX111106		1109	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca strain ATCC 13182 internal transcribed spacer 1, complete sequence	AY116899		352	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca strain ATCC 13182 RpoB gene, partial cds	AY367363		1029	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca strain ATCC 13182 Mdh gene, partial cds	AY367380		673	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca strain ATCC 13182 gyrase B (gyrB) gene, partial cds	AY370849		506	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca strain ATCC 13182 elongation factor EF-G (fusA) gene, partial cds	EU010028		633	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca strain ATCC 13182 leucine tRNA synthetase (leuS) gene, partial cds	EU010055		642	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca strain ATCC 13182 CTP synthetase (pyrG) gene, partial cds	EU010082		306	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca strain ATCC 13182 RNA polymerase beta subunit (rpoB) gene, partial cds	EU010109		501	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca strain ATCC 13182 16S ribosomal RNA gene, partial sequence	FJ971867	16S	795	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca RNA polymerase beta-subunit (rpoB) gene, partial cds	U77442		512	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca 16S ribosomal RNA gene, partial sequence	U78183	16S	1502	571	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Klebsiella oxytoca 16S rRNA gene, strain ATCC13182T, partial	Y17655	16S	1452	571	*
[Ref.: #20218]	Marker Gene (EMBL Direct submission)	Klebsiella oxytoca partial 23S rRNA gene, type strain DSM 5175T	AJ549513		834	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca strain DSM 5175 origin of replication oriC, complete sequence	DQ227490		289	571	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Klebsiella oxytoca gene for 16S ribosomal RNA, partial sequence	AB004754	16S	1441	571	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Klebsiella oxytoca gene for GroES protein homologue, GroEL protein homologue, partial cds	AB008147		1933	571	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Klebsiella oxytoca gene for 16S rRNA, partial sequence, strain: JCM 1665	AB626120	16S	1462	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca strain LMG 3055 ATP synthase beta subunit (atpD) gene, partial cds	JX424964		642	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca strain LMG 3055 DNA gyrase (gyrB) gene, partial cds	JX425093		742	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca strain LMG 3055 initiation translation factor 2 (infB) gene, partial cds	JX425223		615	571	*
[Ref.: #20218]	Marker Gene (GenBank Direct submission)	Klebsiella oxytoca strain LMG 3055 RNA polymerase beta subunit (rpoB) gene, partial cds	JX425349		637	571	*
[Ref.: #20218]	Marker Gene (DDBJ Direct submission)	Klebsiella oxytoca gene for 16S rRNA, partial sequence, strain: NBRC 102593	AB681870	16S	1465	571	*

Availability in culture collectionsStrain availability

[Ref.: #1950]

Culture collection no.

DSM 5175, ATCC 13182, IAM 14201, JCM 1665, CCUG 15717, CECT 860

[Ref.: #1950]

Strain history

<- ATCC <- R. Hugh, 479-2

[Ref.: #20218]

Associated Passport(s) in StrainInfo

151753, 159086, 12427

References

#1950

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 5175

#20215

Leibniz Institute DSMZ D.Gleim, M.Kracht, N.Weiss et. al.: Prokaryotic Nomenclature Up-to-date - compilation of all names of Bacteria and Archaea, validly published according to the Bacteriological Code since 1. Jan. 1980, and validly published nomenclatural changes since .

#20218

Verslyppe, B., De Smet, W., De Baets, B., De Vos, P., Dawyndt P.: StrainInfo introduces electronic passports for microorganisms.. Syst Appl Microbiol. 37: 42 - 50 2014 ( DOI 10.1016/j.syapm.2013.11.002 , PubMed 24321274 )

#34208 ; Curators of the CIP;
#46330 Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 15717
* These References are textmined

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