Name: Marinobacterium halophilum mano11
Creator: BacDive
License: https://creativecommons.org/licenses/by/4.0/

Strain identifier

BacDive ID: 460

Type strain:

Species: Marinobacterium halophilum

Strain Designation: mano11, 30.101

Culture col. no.: DSM 17586, KCTC 12240

Strain history: <- J.W. Bae, KRIBB

NCBI tax ID(s): 1122199 (strain), 267374 (species)

SI-ID 232780

KCTC 12240, DSM 17586

Special Collections

Section

When using BacDive for research please cite our paper

Marinobacterium halophilum mano11 is an aerobe, halophilic, mesophilic bacterium that forms circular colonies and was isolated from tidal flat area of Dae-Chun.

colony-forming
Gram-negative
motile
rod-shaped
aerobe
halophilic
mesophilic
16S sequence
Bacteria
genome sequence

Information on the name and the taxonomic classification. Name and taxonomic classification

	Last LPSN update	09-12-2024 (DD-MM-YYYY)
	Domain	*Bacteria*
	Phylum	*Pseudomonadota*
	Class	*Gammaproteobacteria*
	Order	*Alteromonadales*
	Family	*Alteromonadaceae*
	Genus	*Marinobacterium*
	Species	**Marinobacterium halophilum**
	Full Scientific Name (LPSN)	Marinobacterium halophilum Chang et al. 2007

Information on morphological and physiological properties Morphology

[Ref.: #23293]	Gram stain	negative
[Ref.: #67771]	Gram stain	negative
[Ref.: #125438]	Gram stain	negative Confidence in %97.25
[Ref.: #125439]	Gram stain	negative Confidence in %99.7

[Ref.: #23293]	Cell length	2.1-3.0 µm

[Ref.: #23293]	Cell width	0.5-0.7 µm

[Ref.: #23293]	Cell shape	rod-shaped

[Ref.: #23293]	Motility	yes
[Ref.: #125439]	Motility	yes Confidence in %90.4

[Ref.: #23293]	Flagellum arrangement	monotrichous, polar

[Ref.: #23293]	Colony size	2-3 mm
[Ref.: #23293]	Colony color	pale orange to yellow
[Ref.: #23293]	Colony shape	circular
[Ref.: #23293]	Incubation period	5 days
[Ref.: #23293]	Cultivation medium used	Luria-Bertani agar

Information on culture and growth conditions Culture and growth conditions

[Ref.: #7073]

Culture medium

BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)

[Ref.: #7073]

Culture medium growth

[Ref.: #7073]

Culture medium link

Medium recipe at MediaDive

[Ref.: #7073]

Culture medium composition

expand / minimize

[Ref.: #23293]

Culture medium

LB (Luria-Bertani) MEDIUM

[Ref.: #23293]

Culture medium growth

		Temperature
[Ref.: #7073]	growth	28 °C
[Ref.: #23293]	growth	45 °C
[Ref.: #67771]	growth	25 °C

	pH	Kind of pH		pH
[Ref.: #23293]			growth	5.3-9.3

Information on physiology and metabolism Physiology and metabolism

[Ref.: #67771]	Oxygen tolerance	aerobe
[Ref.: #125439]	Oxygen tolerance	obligate aerobe Confidence in %98.2

[Ref.: #125438]	Ability of spore formation	no Confidence in %94.51
[Ref.: #125439]	Ability of spore formation	no Confidence in %99.5

[Ref.: #23293]

Halophily / tolerance level

halophilic

	Salt	Tested relation		Salt conc.
[Ref.: #23293]	NaCl		growth	3-12	%
[Ref.: #23293]	NaCl	no	growth	0	%
[Ref.: #23293]	NaCl	no	growth	15	%

	Metabolite	Utilization activity	Kind of utilization tested
[Ref.: #23293]	arabinose ChEBI	-	builds acid from
[Ref.: #23293]	casein	+	hydrolysis
[Ref.: #23293]	D-arabitol ChEBI	-	builds acid from
[Ref.: #23293]	D-xylose ChEBI	-	builds acid from
[Ref.: #23293]	fructose ChEBI	+	builds acid from
[Ref.: #23293]	galactitol ChEBI	-	builds acid from
[Ref.: #23293]	galactose ChEBI	-	builds acid from
[Ref.: #23293]	glucose ChEBI	+	builds acid from
[Ref.: #23293]	glycerol ChEBI	+	builds acid from
[Ref.: #23293]	inulin ChEBI	-	builds acid from
[Ref.: #23293]	lactose ChEBI	+	builds acid from
[Ref.: #23293]	maltose ChEBI	+	builds acid from
[Ref.: #23293]	mannitol ChEBI	+	builds acid from
[Ref.: #23293]	mannose ChEBI	+	builds acid from
[Ref.: #23293]	raffinose ChEBI	+	builds acid from
[Ref.: #23293]	rhamnose ChEBI	-	builds acid from
[Ref.: #23293]	ribose ChEBI	+	builds acid from
[Ref.: #23293]	sorbitol ChEBI	-	builds acid from
[Ref.: #23293]	starch ChEBI	+	hydrolysis
[Ref.: #23293]	sucrose ChEBI	+	builds acid from
[Ref.: #23293]	trehalose ChEBI	+	builds acid from
	Only first 10 entries are displayed. Click here to see all.

	Enzyme	Enzyme activity	EC number
[Ref.: #23293]	acid phosphatase	+	3.1.3.2
[Ref.: #23293]	alkaline phosphatase	+	3.1.3.1
[Ref.: #23293]	alpha-chymotrypsin	-	3.4.21.1
[Ref.: #23293]	alpha-fucosidase	-	3.2.1.51
[Ref.: #23293]	alpha-galactosidase	-	3.2.1.22
[Ref.: #23293]	alpha-glucosidase	-	3.2.1.20
[Ref.: #23293]	alpha-mannosidase	-	3.2.1.24
[Ref.: #23293]	beta-galactosidase	-	3.2.1.23
[Ref.: #23293]	beta-glucosidase	-	3.2.1.21
[Ref.: #23293]	beta-glucuronidase	-	3.2.1.31
[Ref.: #23293]	cystine arylamidase	-	3.4.11.3
[Ref.: #23293]	esterase (C 4)	+
[Ref.: #23293]	esterase lipase (C 8)	+
[Ref.: #23293]	leucine arylamidase	+	3.4.11.1
[Ref.: #23293]	lipase (C 14)	-
[Ref.: #23293]	N-acetyl-beta-glucosaminidase	-	3.2.1.52
[Ref.: #23293]	naphthol-AS-BI-phosphohydrolase	+
[Ref.: #23293]	trypsin	-	3.4.21.4
[Ref.: #23293]	valine arylamidase	-
	Only first 10 entries are displayed. Click here to see all.

Information on isolation source, the sampling and environmental conditions Isolation, sampling and environmental information

[Ref.: #7073]	Sample type/isolated from	tidal flat area of Dae-Chun
[Ref.: #7073]	Geographic location (country and/or sea, region)	Chung-Nam (36° 17' 45.2" N 126° 31' 9.5" E),
[Ref.: #7073]	Country	Republic of Korea
[Ref.: #7073]	Country ISO 3 Code	KOR
[Ref.: #7073]	Continent	Asia
[Ref.: #7073]	Geographic location	36.2959°/126.5190°

[Ref.: #67771]	Sample type/isolated from	From west sea
[Ref.: #67771]	Country	Republic of Korea
[Ref.: #67771]	Country ISO 3 Code	KOR
[Ref.: #67771]	Continent	Asia

[Ref.: #23293]	Enrichment culture	Marine agar (Difco)
[Ref.: #23293]	Enrichment culture temperature	25 ̊C
[Ref.: #23293]	Isolation/enrichment procedure	dilution plating technique
* marker position based on {}

Isolation sources categories

#Environmental

#Terrestrial

#Tidal flat

What are isolation sources categories?

[Ref.: #69479]

Global distribution of 16S sequence AY563030 (>99% sequence identity) for Marinobacterium halophilum subclade from Microbeatlas

Aquatic Samples	390
Soil Samples	21
Animal Samples	66
Plant Samples	9
Total Samples	486

Information on possible application of the strain and its possible interaction with e.g. potential hosts Safety information

[Ref.: #7073]

Biosafety level

Risk group (German classification)
According to TRBA 466

Information on genomic background e.g. entries in nucleic sequence databass Sequence information

16S Sequence information:

	Sequence accession description	Seq. accession number	Sequence length (bp)	Sequence database	Associated NCBI tax ID
[Ref.: #7073]	Marinobacterium halophilum strain mano11 16S ribosomal RNA gene, partial sequence	AY563030	1400	GenBank ENA	267374 tax ID

Genome sequence information:

	Sequence accession description	Seq. accession number	Assembly level	Sequence database	Associated NCBI tax ID
[Ref.: #66792]	Marinobacterium halophilum DSM 17586	GCA_003014615	scaffold	GenBank ENA	267374 tax ID	*
[Ref.: #66792]	Marinobacterium halophilum strain DSM 17586	267374.3	wgs	PATRIC	267374 tax ID	*
[Ref.: #66792]	Marinobacterium halophilum DSM 17586	2728369480	draft	JGI IMG/M	267374 tax ID	*

Data predicted using genome information as a basis Genome-based predictions

	Model	Trait	Prediction	Confidence in %	In training data
	Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinobacterium halophilum DSM 17586 NCBI: GCA_003014615.1
[Ref.: #125438]	gram-positive	gram-positiveⓘ	no	97.25	yes
[Ref.: #125438]	anaerobic	anaerobicⓘ	no	92.57	no
[Ref.: #125438]	aerobic	aerobicⓘ	yes	70.014	no
[Ref.: #125438]	spore-forming	spore-formingⓘ	no	94.51	no
[Ref.: #125438]	thermophile	thermophilicⓘ	no	98	yes
[Ref.: #125438]	motile2+	flagellatedⓘ	yes	89.376	yes

	Model	Trait	Prediction	Confidence in %
	Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Marinobacterium halophilum DSM 17586 NCBI: GCA_003014615
[Ref.: #125439]	BacteriaNet	spore_formationⓘ	no	99.5
[Ref.: #125439]	BacteriaNet	motilityⓘ	yes	90.4
[Ref.: #125439]	BacteriaNet	gram_stainⓘ	negative	99.7
[Ref.: #125439]	BacteriaNet	oxygen_toleranceⓘ	obligate aerobe	98.2

Availability in culture collections External links

[Ref.: #7073]

Culture collection no.

DSM 17586, KCTC 12240

[Ref.: #70139]

SI-ID 232780

Literature:

Topic	Title	Authors	Journal	DOI	Year
Phylogeny	Marinobacterium maritimum sp. nov., a marine bacterium isolated from Arctic sediment.	Kim SJ, Park SJ, Yoon DN, Park BJ, Choi BR, Lee DH, Roh Y, Rhee SK	Int J Syst Evol Microbiol	10.1099/ijs.0.009134-0	2009	*
Phylogeny	Marinobacterium rhizophilum sp. nov., isolated from the rhizosphere of the coastal tidal-flat plant Suaeda japonica.	Kim YG, Jin YA, Hwang CY, Cho BC	Int J Syst Evol Microbiol	10.1099/ijs.0.65176-0	2008	*
Phylogeny	Marinobacterium halophilum sp. nov., a marine bacterium isolated from the Yellow Sea.	Chang HW, Nam YD, Kwon HY, Park JR, Lee JS, Yoon JH, An KG, Bae JW	Int J Syst Evol Microbiol	10.1099/ijs.0.64505-0	2007	*

References

#7073

Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 17586

#20215

Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )

#23293

Ho-Won Chang, Young-Do Nam, Hyuk-Yong Kwon, Ja Ryeong Park, Jung-Sook Lee, Jung-Hoon Yoon, Kwang-Guk An and Jin-Woo Bae: Marinobacterium halophilum sp. nov., a marine bacterium isolated from the Yellow Sea. IJSEM 57: 77 - 80 2007 ( DOI 10.1099/ijs.0.64505-0 , PubMed 17220446 )

#66792

Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .

#67771 Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;

#69479

João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .

#70139

Reimer, L.C., Lissin, A.,Schober, I., Witte,J.F., Podstawka, A., Lüken, H., Bunk, B.,Overmann, J.: StrainInfo: A central database for resolving microbial strain identifiers . ( DOI 10.60712/SI-ID232780.1 )

#125438

Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )

#125439

Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .

* These data were automatically processed and therefore are not curated

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Marinobacterium halophilum DSM 17586

Marinobacterium halophilum DSM 17586

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