Marinobacterium litorale (DSM 23545, KCTC 12756, LMG 23872)

Name: Marinobacterium litorale (DSM 23545, KCTC 12756, LMG 23872)
Creator: BacDive
License: http://creativecommons.org/licenses/by/4.0/

BacDive ID 461

Type strain

Culture col. no. DSM 23545 KCTC 12756 LMG 23872 CCUG 54309 IMCC 1877

NCBI tax ID(s) 1122201 404770

Special Collections DSMZ CCUG KCTC Literature strains

History <- KCTC <- J.-C. Cho, Inha University, Incheon, Korea <- JC Cho, Inha Univ.

Links

Marinobacterium litorale DSM 23545 is a facultative anaerobe, Gram-negative, motile bacterium that was isolated from surface seawater collected near the coast of Deokjeok island ,.

Gram-negative motile rod-shaped facultative anaerobe genome sequence 16S sequence Bacteria

Name and taxonomic classification

SI-ID 293974

LMG 23872,CCUG 54309,KCTC 12756,DSM 23545

@ref 20215

Last LPSN update 2026-02-09 11:17:52

Domain Bacteria

Phylum Pseudomonadota

Class Gammaproteobacteria

Order Alteromonadales

Family Alteromonadaceae

Genus Marinobacterium

Species Marinobacterium litorale

Full scientific name Marinobacterium litorale Kim et al. 2007

Morphology

Cell morphology

@ref	Gram stain	Cell length	Cell width	Cell shape	Confidence
32057	negative	1.6 µm	0.65 µm	rod-shaped
67771	negative
125439	negative				98.5
125438					94.981
125438	negative				98.494

Colony morphology

60135

Incubation period1 day

Culture and growth conditions

Culture medium

@ref	Name	Growth	Medium link	Composition
17276	BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514)		Medium recipe at MediaDive	Name: BACTO MARINE BROTH (DIFCO 2216) (DSMZ Medium 514) Composition: NaCl 19.45 g/l MgCl2 5.9 g/l Bacto peptone 5.0 g/l Na2SO4 3.24 g/l CaCl2 1.8 g/l Yeast extract 1.0 g/l KCl 0.55 g/l NaHCO3 0.16 g/l Fe(III) citrate 0.1 g/l KBr 0.08 g/l SrCl2 0.034 g/l H3BO3 0.022 g/l Na2HPO4 0.008 g/l Na-silicate 0.004 g/l NaF 0.0024 g/l (NH4)NO3 0.0016 g/l Distilled water

Culture temp

@ref	Growth	Type	Temperature (°C)
17276	positive	growth	20
32057	positive	growth	8.0-42
32057	positive	optimum	30
60135	positive	growth	30-37
67771	positive	growth	28

Culture pH

@ref	Ability	Type	PH	PH range
32057	positive	optimum	9
32057	positive	growth	5.0-12	alkaliphile

Physiology and metabolism

Oxygen tolerance

@ref	Oxygen tolerance
32057	facultative anaerobe
60135	aerobe
67771	aerobe

Spore formation

@ref	Spore formation	Confidence
125439		99
125438		91.99

Halophily

@ref	Salt	Growth	Tested relation	Concentration
32057	NaCl	positive	growth	1.0-7.5 %
32057	NaCl	positive	optimum	3.25 %

Observation

67771

Observationquinones: Q-8

Metabolite utilization

@ref	Chebi-ID	Metabolite	Utilization activity	Kind of utilization tested
32057	30089 ChEBI	acetate	+	carbon source
32057	16449 ChEBI	alanine	+	carbon source
32057	16947 ChEBI	citrate	+	carbon source
32057	15740 ChEBI	formate	+	carbon source
32057	24175 ChEBI	galacturonate	+	carbon source
32057	29987 ChEBI	glutamate	+	carbon source
32057	28087 ChEBI	glycogen	+	carbon source
32057	21217 ChEBI	L-alaninamide	+	carbon source
32057	24996 ChEBI	lactate	+	carbon source
32057	15792 ChEBI	malonate	+	carbon source
32057	51850 ChEBI	methyl pyruvate	+	carbon source
32057	18257 ChEBI	ornithine	+	carbon source
32057	26271 ChEBI	proline	+	carbon source
32057	17272 ChEBI	propionate	+	carbon source
32057	17148 ChEBI	putrescine	+	carbon source
32057	26490 ChEBI	quinate	+	carbon source
32057	17822 ChEBI	serine	+	carbon source
32057	30031 ChEBI	succinate	+	carbon source
32057	53426 ChEBI	tween 80	+	carbon source

Enzymes

@ref	Value	Activity	Ec
32057	acid phosphatase	+	3.1.3.2
32057	alkaline phosphatase	+	3.1.3.1
32057	urease	+	3.5.1.5

Isolation, sampling and environmental information

Isolation source categories

Cat1	Cat2	Cat3
#Environmental	#Aquatic	#Marine
#Environmental	#Aquatic	#Surface water
#Environmental	#Terrestrial	#Coast

Isolation

@ref	Sample type	Geographic location	Country	Country ISO 3 Code	Continent
17276	surface seawater collected near the coast of Deokjeok island (Yellow Sea),	Yellow Sea, Deokjeok island, Korea.	Republic of Korea	KOR	Asia
60135	Seawater	near Deokjeok Island	Republic of Korea	KOR	Asia
67771	From seawater		Republic of Korea	KOR	Asia

Taxonmaps

69479

Global distribution of 16S sequence DQ917760 (>99% sequence identity) for Marinobacterium litorale subclade from Microbeatlas

Aquatic Samples	93
Soil Samples	1
Animal Samples
Plant Samples
Total Samples	94

Interaction and safety

Risk assessment

@ref	Biosafety level	Biosafety level comment
17276	1	Risk group (German classification) According to TRBA 466

Sequence information

Genome sequences

@ref	Description	Assembly level	INSDC accession	BV-BRC accession	IMG accession	NCBI tax ID	Score
66792	ASM42898v1 assembly for Marinobacterium litorale DSM 23545	scaffold	GCA_000428985	1122201.3	2522572179	1122201	65.74

16S sequences

@ref	Description	Accession	Length	Database	NCBI tax ID
17276	Marinobacterium litorale strain IMCC1877 16S ribosomal RNA gene, partial sequence	DQ917760	1508		404770

GC content

@ref	GC-content (mol%)	Method
17276	60.7	high performance liquid chromatography (HPLC)
32057	60.7

Genome-based predictions

Predictions

Predictions from Deep Learning for Genome Sequence Data. R package version 0.3.1 based on: Marinobacterium litorale DSM 23545
NCBI: GCA_000428985

@ref	Trait	Model	Prediction	Confidence in %	In training data
125439	oxygen_tolerance	BacteriaNetⓘ	anaerobe	67.40	no
125439	gram_stain	BacteriaNetⓘ	negative	98.50	no
125439	motility	BacteriaNetⓘ	yes	79.00	no
125439	spore_formation	BacteriaNetⓘ	no	99.00	no

Predictions from bacterial phenotypic traits through improved machine learning using high-quality, curated datasets based on: Marinobacterium litorale DSM 23545 DSM 23545
NCBI: GCA_000428985.1

@ref	Trait	Model	Prediction	Confidence in %	In training data
125438	gram-positive	gram-positiveⓘ	no	98.49	no
125438	anaerobic	anaerobicⓘ	no	93.89	yes
125438	aerobic	aerobicⓘ	yes	76.91	no
125438	spore-forming	spore-formingⓘ	no	91.99	no
125438	thermophilic	thermophileⓘ	no	98.97	no
125438	flagellated	motile2+ⓘ	yes	94.98	no

Literature

Topic	Title	Authors	Journal	DOI	Year
Enzymology	Applications of Marine-Derived Microorganisms and Their Enzymes in Biocatalysis and Biotransformation, the Underexplored Potentials.	Birolli WG, Lima RN, Porto ALM.	Front Microbiol	10.3389/fmicb.2019.01453	2019
Metabolism	The Pseudoalteromonas luteoviolacea L-amino Acid Oxidase with Antimicrobial Activity Is a Flavoenzyme.	Andreo-Vidal A, Sanchez-Amat A, Campillo-Brocal JC.	Mar Drugs	10.3390/md16120499	2018
Enzymology	Characterization of two styrene monooxygenases from marine microbes.	Pu W, Cui C, Guo C, Wu ZL	Enzyme Microb Technol	10.1016/j.enzmictec.2018.02.001	2018
	Cysteiniphilum marinum sp. nov., isolated from coastal seawater.	Luo HM, Feng JH, Li LH, Li MM, Liu RQ, Chen F, Lin Y, Li WJ, Qu PH, Xiao M.	Antonie Van Leeuwenhoek	10.1007/s10482-021-01579-7	2021
	Genome taxonomy of the genus Neptuniibacter and proposal of Neptuniibacter victor sp. nov. isolated from sea cucumber larvae.	Kudo R, Yamano R, Yu J, Koike S, Haditomo AHC, de Freitas MAM, Tsuchiya J, Mino S, Thompson F, Romalde JL, Kasai H, Sakai Y, Sawabe T.	PLoS One	10.1371/journal.pone.0290060	2023
Phylogeny	Marinobacterium zhoushanense sp. nov., isolated from surface seawater.	Han SB, Wang RJ, Yu XY, Su Y, Sun C, Fu GY, Zhang CY, Zhu XF, Wu M	Int J Syst Evol Microbiol	10.1099/ijsem.0.001213	2016
Phylogeny	Marinobacterium mangrovicola sp. nov., a marine nitrogen-fixing bacterium isolated from mangrove roots of Rhizophora mangle.	Alfaro-Espinoza G, Ullrich MS	Int J Syst Evol Microbiol	10.1099/ijs.0.067462-0	2014
Phylogeny	Marinobacterium lutimaris sp. nov., isolated from a tidal flat.	Kim JM, Lee SH, Jung JY, Jeon CO	Int J Syst Evol Microbiol	10.1099/ijs.0.016246-0	2009
Phylogeny	Marinobacterium marisflavi sp. nov., isolated from a costal seawater.	Kim H, Oh HM, Yang SJ, Lee JS, Hong JS, Cho JC	Curr Microbiol	10.1007/s00284-009-9355-5	2009
Phylogeny	Marinobacterium litorale sp. nov. in the order Oceanospirillales.	Kim H, Choo YJ, Song J, Lee JS, Lee KC, Cho JC	Int J Syst Evol Microbiol	10.1099/ijs.0.64892-0	2007

References

#17276	Leibniz Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH ; Curators of the DSMZ; DSM 23545
#20215	Parte, A.C., Sardà Carbasse, J., Meier-Kolthoff, J.P., Reimer, L.C. and Göker, M.: List of Prokaryotic names with Standing in Nomenclature (LPSN) moves to the DSMZ. IJSEM ( DOI 10.1099/ijsem.0.004332 )
#28306	IJSEM 1659 2007 ( DOI 10.1099/ijs.0.64892-0 , PubMed 17625212 )
#32057	Barberan A, Caceres Velazquez H, Jones S, Fierer N.: Hiding in Plain Sight: Mining Bacterial Species Records for Phenotypic Trait Information. mSphere 2: 2017 ( DOI 10.1128/mSphere.00237-17 , PubMed 28776041 ) - originally annotated from #28306
#60135	Culture Collection University of Gothenburg (CCUG) ; Curators of the CCUG; CCUG 54309
#66792	Julia Koblitz, Joaquim Sardà, Lorenz Christian Reimer, Boyke Bunk, Jörg Overmann: Automatically annotated for the DiASPora project (Digital Approaches for the Synthesis of Poorly Accessible Biodiversity Information) .
#67771	Korean Collection for Type Cultures (KCTC) ; Curators of the KCTC;
#69479	João F Matias Rodrigues, Janko Tackmann,Gregor Rot, Thomas SB Schmidt, Lukas Malfertheiner, Mihai Danaila,Marija Dmitrijeva, Daniela Gaio, Nicolas Näpflin and Christian von Mering. University of Zurich.: MicrobeAtlas 1.0 beta .
#125438	Julia Koblitz, Lorenz Christian Reimer, Rüdiger Pukall, Jörg Overmann: Predicting bacterial phenotypic traits through improved machine learning using high-quality, curated datasets. 2024 ( DOI 10.1101/2024.08.12.607695 )
#125439	Philipp Münch, René Mreches, Martin Binder, Hüseyin Anil Gündüz, Xiao-Yin To, Alice McHardy: deepG: Deep Learning for Genome Sequence Data. R package version 0.3.1 .
#126262	A. Lissin, I. Schober, J. F. Witte, H. Lüken, A. Podstawka, J. Koblitz, B. Bunk, P. Dawyndt, P. Vandamme, P. de Vos, J. Overmann, L. C. Reimer: StrainInfo—the central database for linked microbial strain identifiers. ( DOI 10.1093/database/baaf059 )

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Marinobacterium litorale (DSM 23545, KCTC 12756, LMG 23872)

Name and taxonomic classification

Morphology

Cell morphology

Colony morphology

Culture and growth conditions

Culture medium

Culture temp

Culture pH

Physiology and metabolism

Oxygen tolerance

Spore formation

Halophily

Observation

Metabolite utilization

Enzymes

Isolation, sampling and environmental information

Isolation source categories

Isolation

Taxonmaps

Interaction and safety

Risk assessment

Sequence information

Genome sequences

Genome browser: GCA_000428985

16S sequences

GC content

Genome-based predictions

Predictions

Literature

Literature

References

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